Wall clock time and date at job start Tue Mar 31 2020 05:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99802 * 2 1 4 4 H 1.48499 * 109.47303 * 270.00027 * 3 2 1 5 5 H 1.48504 * 109.47147 * 29.99915 * 3 2 1 6 6 H 1.48503 * 109.47032 * 150.00102 * 3 2 1 7 7 C 1.37878 * 119.99842 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99289 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00123 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.47009 * 180.02562 * 9 7 2 11 11 N 1.40064 * 125.87305 * 269.99983 * 10 9 7 12 12 C 1.30249 * 109.69219 * 180.02562 * 11 10 9 13 13 C 1.41176 * 108.47158 * 359.76231 * 12 11 10 14 14 C 1.36313 * 125.87029 * 89.99661 * 10 9 7 15 15 N 1.33198 * 134.62224 * 0.02562 * 14 10 9 16 16 C 1.31501 * 120.68620 * 179.97438 * 15 14 10 17 17 N 1.32118 * 122.64849 * 359.97438 * 16 15 14 18 18 C 1.32865 * 121.19457 * 0.02562 * 17 16 15 19 19 N 1.38108 * 120.81696 * 179.97438 * 18 17 16 20 20 C 1.47907 * 111.00013 * 127.97722 * 19 18 17 21 21 C 1.50796 * 108.49575 * 153.76257 * 20 19 18 22 22 C 1.53698 * 112.09396 * 92.55688 * 21 20 19 23 23 N 1.48069 * 112.47185 * 318.56044 * 22 21 20 24 24 C 1.46895 * 110.99922 * 192.19170 * 23 22 21 25 25 C 1.50699 * 109.47110 * 66.20647 * 24 23 22 26 26 N 1.34776 * 120.00298 * 185.63487 * 25 24 23 27 27 O 1.21283 * 120.00294 * 5.63358 * 25 24 23 28 28 C 1.44639 * 113.77850 * 318.31213 * 23 22 21 29 29 C 1.40015 * 110.99777 * 0.02562 * 19 18 17 30 30 H 0.96995 * 120.00101 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.46981 * 60.00119 * 9 7 2 32 32 H 1.09003 * 109.46899 * 300.00230 * 9 7 2 33 33 H 1.08001 * 125.76356 * 180.02562 * 12 11 10 34 34 H 1.08004 * 118.67541 * 179.97438 * 16 15 14 35 35 H 1.09004 * 109.63485 * 273.47079 * 20 19 18 36 36 H 1.09004 * 109.63101 * 34.06239 * 20 19 18 37 37 H 1.08992 * 108.95926 * 213.23673 * 21 20 19 38 38 H 1.09006 * 108.95506 * 331.97731 * 21 20 19 39 39 H 1.08997 * 108.88186 * 79.33420 * 22 21 20 40 40 H 1.09005 * 108.87964 * 197.88310 * 22 21 20 41 41 H 1.09000 * 109.46786 * 186.20546 * 24 23 22 42 42 H 1.08994 * 109.47370 * 306.20268 * 24 23 22 43 43 H 0.97009 * 119.99640 * 0.02562 * 26 25 24 44 44 H 0.97000 * 120.00579 * 179.97438 * 26 25 24 45 45 H 1.09002 * 109.65947 * 334.49105 * 28 23 22 46 46 H 1.09000 * 109.52248 * 214.09366 * 28 23 22 47 47 H 1.08996 * 108.96314 * 308.76482 * 29 19 18 48 48 H 1.08999 * 108.96328 * 67.51543 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 7 2.7365 -4.2365 -1.1355 12 6 3.5489 -5.1876 -0.7725 13 6 3.5895 -5.2272 0.6381 14 6 2.7222 -4.2197 1.1041 15 7 2.5790 -4.0527 2.4178 16 6 3.2315 -4.8164 3.2664 17 7 4.0515 -5.7762 2.8767 18 6 4.2611 -6.0210 1.5877 19 7 5.1204 -7.0260 1.1890 20 6 4.4636 -7.9324 0.2222 21 6 5.5270 -8.5614 -0.6424 22 6 6.0079 -9.9082 -0.0792 23 7 6.1750 -9.8793 1.3917 24 6 6.9009 -11.0665 1.8625 25 6 8.3152 -11.0291 1.3436 26 7 9.1382 -12.0755 1.5540 27 8 8.7130 -10.0574 0.7365 28 6 6.7883 -8.6660 1.8853 29 6 5.6771 -7.6785 2.2956 30 1 -0.4850 0.8400 -0.0004 31 1 0.6241 -2.5567 -0.8903 32 1 0.6247 -2.5570 0.8897 33 1 4.1018 -5.8339 -1.4383 34 1 3.0914 -4.6524 4.3247 35 1 3.9210 -8.7102 0.7596 36 1 3.7732 -7.3644 -0.4015 37 1 5.1228 -8.7196 -1.6421 38 1 6.3773 -7.8826 -0.7080 39 1 5.2806 -10.6781 -0.3366 40 1 6.9647 -10.1604 -0.5367 41 1 6.9138 -11.0760 2.9523 42 1 6.4035 -11.9650 1.4973 43 1 8.8199 -12.8529 2.0392 44 1 10.0484 -12.0516 1.2197 45 1 7.4020 -8.2205 1.1023 46 1 7.4090 -8.8976 2.7509 47 1 6.0973 -6.9338 2.9715 48 1 4.8913 -8.2257 2.8165 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065534635.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:37 Heat of formation + Delta-G solvation = 86.524003 kcal Electronic energy + Delta-G solvation = -32418.471469 eV Core-core repulsion = 28123.902919 eV Total energy + Delta-G solvation = -4294.568550 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 359.181 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.11434 -41.39044 -40.41512 -39.30025 -37.10209 -35.77121 -34.62156 -34.15066 -33.80067 -32.82598 -31.69898 -29.85100 -29.13031 -27.61208 -26.40914 -25.35957 -24.95236 -24.04236 -22.31454 -21.91707 -21.46140 -20.77126 -19.10663 -18.88201 -18.77078 -18.15604 -17.89541 -17.69321 -17.19836 -16.76212 -16.65907 -16.19133 -16.15476 -15.79519 -15.46239 -15.31882 -15.11121 -15.06051 -14.83449 -14.27270 -14.18505 -14.03610 -13.81049 -13.69746 -13.06727 -12.83085 -12.78519 -12.67393 -12.55342 -12.36195 -12.26276 -12.22838 -12.10373 -11.86284 -11.77519 -11.61945 -11.53559 -11.34015 -10.76723 -10.57323 -10.51977 -10.18485 -9.78855 -9.23927 -9.13413 -8.36997 -6.53572 -0.26799 0.34075 1.30020 1.34987 1.35603 1.48020 1.53270 1.68421 2.29318 2.30945 2.71895 2.83583 2.91260 2.92963 3.19675 3.29780 3.62626 3.68574 3.90357 3.99815 4.07480 4.11967 4.14959 4.18633 4.34354 4.39642 4.50934 4.61129 4.63928 4.65228 4.75766 4.82397 4.84719 4.90845 5.00979 5.06116 5.17691 5.24264 5.33334 5.44237 5.47657 5.62366 5.76261 5.86769 5.92999 6.01708 6.06354 6.15322 6.32821 6.51573 6.54937 6.62850 7.15468 7.29572 7.41063 8.70787 Molecular weight = 359.18amu Principal moments of inertia in cm(-1) A = 0.023399 B = 0.002117 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.368430 B =13223.874677 C =13442.076156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.020 3.980 3 Si 0.975 3.025 4 H -0.267 1.267 5 H -0.268 1.268 6 H -0.276 1.276 7 C -0.553 4.553 8 H 0.044 0.956 9 C 0.284 3.716 10 N -0.364 5.364 11 N -0.278 5.278 12 C 0.100 3.900 13 C -0.309 4.309 14 C 0.328 3.672 15 N -0.584 5.584 16 C 0.362 3.638 17 N -0.596 5.596 18 C 0.447 3.553 19 N -0.469 5.469 20 C 0.071 3.929 21 C -0.118 4.118 22 C 0.058 3.942 23 N -0.532 5.532 24 C 0.039 3.961 25 C 0.476 3.524 26 N -0.840 5.840 27 O -0.589 6.589 28 C 0.080 3.920 29 C 0.079 3.921 30 H 0.274 0.726 31 H 0.034 0.966 32 H 0.035 0.965 33 H 0.233 0.767 34 H 0.234 0.766 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.061 0.939 39 H 0.090 0.910 40 H 0.039 0.961 41 H 0.129 0.871 42 H 0.132 0.868 43 H 0.418 0.582 44 H 0.400 0.600 45 H 0.046 0.954 46 H 0.079 0.921 47 H 0.076 0.924 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.872 -30.863 5.165 35.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.181 4.181 3 Si 0.798 3.202 4 H -0.192 1.192 5 H -0.193 1.193 6 H -0.201 1.201 7 C -0.591 4.591 8 H 0.062 0.938 9 C 0.166 3.834 10 N -0.150 5.150 11 N -0.092 5.092 12 C -0.094 4.094 13 C -0.326 4.326 14 C 0.081 3.919 15 N -0.308 5.308 16 C 0.069 3.931 17 N -0.322 5.322 18 C 0.197 3.803 19 N -0.184 5.184 20 C -0.053 4.053 21 C -0.156 4.156 22 C -0.069 4.069 23 N -0.254 5.254 24 C -0.093 4.093 25 C 0.261 3.739 26 N -0.404 5.404 27 O -0.469 6.469 28 C -0.049 4.049 29 C -0.049 4.049 30 H 0.084 0.916 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.249 0.751 34 H 0.250 0.750 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.121 0.879 38 H 0.080 0.920 39 H 0.109 0.891 40 H 0.057 0.943 41 H 0.146 0.854 42 H 0.150 0.850 43 H 0.250 0.750 44 H 0.231 0.769 45 H 0.065 0.935 46 H 0.097 0.903 47 H 0.094 0.906 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 14.853 -28.956 4.595 32.866 hybrid contribution 1.223 0.318 -0.056 1.265 sum 16.076 -28.638 4.539 33.154 Atomic orbital electron populations 1.70006 1.07274 1.28917 1.49349 1.25779 0.95934 1.02781 0.93567 0.85313 0.78192 0.77863 0.78824 1.19176 1.19263 1.20068 1.21371 0.92821 0.91222 1.53702 0.93784 1.19164 0.85874 0.80690 0.97705 1.49137 1.37201 1.28472 1.00227 1.76921 1.13551 1.09688 1.09083 1.24262 0.96446 0.96021 0.92721 1.19768 1.10434 1.06152 0.96232 1.19408 0.92405 0.91228 0.88872 1.67542 1.30994 1.31983 1.00306 1.25313 0.84318 0.83120 1.00340 1.68486 1.24091 1.24153 1.15440 1.19653 0.83431 0.90025 0.87225 1.56049 1.29254 1.14058 1.19035 1.22258 0.96258 0.93699 0.93074 1.21448 0.98376 0.96217 0.99556 1.22507 1.00421 0.97921 0.86063 1.61206 1.49853 1.02012 1.12365 1.22571 0.87277 0.96051 1.03370 1.22539 0.90378 0.82288 0.78712 1.43941 1.16390 1.20427 1.59667 1.90779 1.78058 1.34735 1.43370 1.21767 0.93650 0.89693 0.99804 1.21048 0.97609 0.96265 0.90025 0.91649 0.94761 0.94721 0.75074 0.75026 0.90886 0.89612 0.87851 0.91984 0.89131 0.94257 0.85367 0.85018 0.75028 0.76910 0.93519 0.90273 0.90613 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.72 13.29 21.45 0.28 -54.43 16 2 C 0.02 1.18 5.46 84.65 0.46 1.64 16 3 Si 0.97 45.71 29.54 68.60 2.03 47.74 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 5 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 6 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 7 C -0.55 -33.36 9.39 25.60 0.24 -33.12 16 8 H 0.04 2.74 7.81 -2.91 -0.02 2.72 16 9 C 0.28 16.28 6.19 85.63 0.53 16.81 16 10 N -0.36 -18.47 3.63 -348.94 -1.27 -19.74 16 11 N -0.28 -12.39 12.45 -56.45 -0.70 -13.09 16 12 C 0.10 3.50 10.41 85.65 0.89 4.39 16 13 C -0.31 -11.63 5.61 -21.28 -0.12 -11.74 16 14 C 0.33 15.19 8.04 134.15 1.08 16.27 16 15 N -0.58 -25.61 10.47 -198.11 -2.07 -27.68 16 16 C 0.36 12.20 12.24 180.87 2.21 14.42 16 17 N -0.60 -18.96 8.72 -197.01 -1.72 -20.68 16 18 C 0.45 14.27 6.44 133.64 0.86 15.13 16 19 N -0.47 -11.63 4.10 -715.95 -2.93 -14.56 16 20 C 0.07 1.38 5.01 85.39 0.43 1.81 16 21 C -0.12 -1.85 5.37 30.11 0.16 -1.69 16 22 C 0.06 0.79 5.16 86.31 0.45 1.24 16 23 N -0.53 -7.20 4.11 -899.59 -3.70 -10.90 16 24 C 0.04 0.27 5.59 85.56 0.48 0.74 16 25 C 0.48 5.36 7.21 87.66 0.63 5.99 16 26 N -0.84 -3.10 8.87 -173.53 -1.54 -4.64 16 27 O -0.59 -12.75 13.53 -3.04 -0.04 -12.80 16 28 C 0.08 1.46 4.00 87.14 0.35 1.81 16 29 C 0.08 1.73 4.34 87.96 0.38 2.11 16 30 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 31 H 0.03 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.03 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.23 5.53 7.13 -2.91 -0.02 5.51 16 34 H 0.23 5.64 8.06 -2.91 -0.02 5.62 16 35 H 0.07 1.38 7.57 -2.38 -0.02 1.36 16 36 H 0.09 1.77 4.61 -2.39 -0.01 1.76 16 37 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.06 1.24 7.22 -2.38 -0.02 1.23 16 39 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.04 0.67 5.96 -2.38 -0.01 0.65 16 41 H 0.13 0.41 8.04 -2.39 -0.02 0.40 16 42 H 0.13 0.20 8.12 -2.39 -0.02 0.18 16 43 H 0.42 -1.40 8.83 -92.70 -0.82 -2.22 16 44 H 0.40 1.61 8.93 -92.71 -0.83 0.78 16 45 H 0.05 1.12 5.99 -2.39 -0.01 1.11 16 46 H 0.08 1.30 7.43 -2.39 -0.02 1.29 16 47 H 0.08 1.86 7.46 -2.39 -0.02 1.85 16 48 H 0.05 1.16 8.04 -2.39 -0.02 1.14 16 Total: -1.00 -82.54 382.57 -3.24 -85.78 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -0.61 Total: 9.19 kcal Atomic # 6 Polarization: 26.77 SS G_CDS: 9.03 Total: 35.81 kcal Atomic # 7 Polarization: -152.07 SS G_CDS: -13.65 Total: -165.72 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: -0.04 Total: -12.80 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -82.54 -3.24 -85.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065534635.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.306 kcal (2) G-P(sol) polarization free energy of solvation -82.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds