Wall clock time and date at job start Tue Mar 31 2020 07:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35920 * 116.99942 * 2 1 4 4 C 1.38723 * 120.05774 * 0.02562 * 3 2 1 5 5 C 1.38142 * 119.95045 * 180.30409 * 4 3 2 6 6 C 1.38280 * 120.07295 * 359.46088 * 5 4 3 7 7 C 1.50699 * 119.94271 * 180.26233 * 6 5 4 8 8 H 1.08994 * 109.47221 * 200.25369 * 7 6 5 9 9 N 1.46499 * 109.47080 * 320.25591 * 7 6 5 10 10 C 1.36938 * 120.00163 * 205.00073 * 9 7 6 11 11 H 1.07993 * 119.99944 * 0.02562 * 10 9 7 12 12 C 1.38814 * 120.00123 * 179.97438 * 10 9 7 13 13 N 1.31618 * 119.99761 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00121 * 179.97438 * 12 10 9 15 15 H 1.48508 * 109.46835 * 90.00418 * 14 12 10 16 16 H 1.48499 * 109.47450 * 210.00184 * 14 12 10 17 17 H 1.48494 * 109.47261 * 330.01122 * 14 12 10 18 18 C 1.50699 * 109.47559 * 80.25311 * 7 6 5 19 19 C 1.38231 * 119.99918 * 279.73378 * 18 7 6 20 20 C 1.38239 * 120.00098 * 179.78708 * 19 18 7 21 21 C 1.38239 * 119.99702 * 0.45494 * 20 19 18 22 22 C 1.38235 * 119.99835 * 359.77252 * 21 20 19 23 23 C 1.38232 * 119.99982 * 99.99745 * 18 7 6 24 24 C 1.38242 * 120.11775 * 0.51408 * 6 5 4 25 25 C 1.38238 * 120.04675 * 359.76895 * 24 6 5 26 26 Br 1.89099 * 120.03754 * 179.97438 * 25 24 6 27 27 H 1.08998 * 109.47006 * 299.99801 * 1 2 3 28 28 H 1.08995 * 109.47328 * 59.99901 * 1 2 3 29 29 H 1.08998 * 109.47060 * 180.02562 * 1 2 3 30 30 H 1.08002 * 120.02147 * 0.02562 * 4 3 2 31 31 H 1.08005 * 119.96148 * 179.69885 * 5 4 3 32 32 H 0.97001 * 120.00232 * 24.99313 * 9 7 6 33 33 H 0.97004 * 119.99757 * 179.97438 * 13 12 10 34 34 H 1.07999 * 120.00605 * 359.97438 * 19 18 7 35 35 H 1.08004 * 120.00531 * 180.24958 * 20 19 18 36 36 H 1.08000 * 119.99807 * 179.79261 * 21 20 19 37 37 H 1.07999 * 119.99426 * 179.97438 * 22 21 20 38 38 H 1.08000 * 120.00206 * 359.97438 * 23 18 7 39 39 H 1.07997 * 119.97899 * 179.74381 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2917 2.3752 0.0005 5 6 1.9211 3.6049 -0.0058 6 6 3.3021 3.6765 -0.0015 7 6 3.9856 5.0196 -0.0024 8 1 5.0108 4.9052 -0.3545 9 7 3.2636 5.9344 -0.8901 10 6 3.9173 6.9943 -1.4596 11 1 4.9653 7.1557 -1.2546 12 6 3.2332 7.8608 -2.3011 13 7 1.9561 7.6639 -2.5512 14 14 4.1248 9.3072 -3.0773 15 1 4.7005 8.8915 -4.3817 16 1 3.1673 10.4218 -3.2916 17 1 5.2156 9.7578 -2.1761 18 6 3.9946 5.5798 1.3965 19 6 2.8660 6.1990 1.9003 20 6 2.8728 6.7090 3.1851 21 6 4.0112 6.6081 3.9628 22 6 5.1413 5.9931 3.4573 23 6 5.1331 5.4793 2.1740 24 6 4.0567 2.5183 -0.0014 25 6 3.4320 1.2851 -0.0010 26 35 4.4645 -0.2991 -0.0017 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 0.2131 2.3202 0.0014 31 1 1.3339 4.5114 -0.0103 32 1 2.3224 5.7892 -1.0746 33 1 1.4780 8.2696 -3.1390 34 1 1.9780 6.2817 1.2912 35 1 1.9897 7.1893 3.5802 36 1 4.0175 7.0096 4.9654 37 1 6.0307 5.9147 4.0648 38 1 6.0161 4.9989 1.7791 39 1 5.1351 2.5768 -0.0022 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065552500.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:17 Heat of formation + Delta-G solvation = 32.736813 kcal Electronic energy + Delta-G solvation = -23493.708495 eV Core-core repulsion = 20027.233114 eV Total energy + Delta-G solvation = -3466.475380 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 361.042 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.21993 -38.94446 -37.49367 -34.94486 -32.43813 -31.94883 -30.42513 -29.90384 -29.57694 -29.02937 -27.34236 -25.18429 -23.41207 -22.24645 -21.81580 -21.70056 -19.78824 -18.19217 -17.39144 -16.44258 -16.14441 -15.80943 -15.31378 -14.85452 -14.70111 -14.35057 -14.07488 -13.78436 -13.47696 -13.28941 -12.89443 -12.80344 -12.76044 -12.46660 -12.19067 -11.98723 -11.29820 -11.16795 -10.96401 -10.91780 -10.80690 -10.73533 -10.48053 -10.46185 -10.16082 -10.05264 -9.79231 -9.07390 -8.68876 -8.39897 -8.21540 -7.89810 -7.11062 -5.85740 -3.15495 1.28970 1.46195 1.80060 1.91493 1.95368 3.19880 3.40162 3.46209 3.47181 3.77850 4.32180 4.52309 4.82115 4.89947 5.07157 5.15195 5.22866 5.32975 5.35510 5.39173 5.44215 5.47596 5.57027 5.57549 5.74471 5.76567 5.94129 6.06883 6.13253 6.15226 6.31637 6.42705 6.50660 6.57265 6.76987 6.85026 6.94425 7.01849 7.28996 7.30965 7.54125 7.65503 8.31246 9.43950 9.93827 10.29898 11.36508 Molecular weight = 361.04amu Principal moments of inertia in cm(-1) A = 0.009833 B = 0.003623 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2846.800440 B = 7726.023826 C = 8637.129546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.308 6.308 3 C 0.141 3.859 4 C -0.200 4.200 5 C -0.045 4.045 6 C -0.092 4.092 7 C 0.249 3.751 8 H 0.069 0.931 9 N -0.711 5.711 10 C -0.240 4.240 11 H 0.072 0.928 12 C -0.007 4.007 13 N -0.931 5.931 14 Si 0.907 3.093 15 H -0.289 1.289 16 H -0.291 1.291 17 H -0.281 1.281 18 C -0.076 4.076 19 C -0.084 4.084 20 C -0.128 4.128 21 C -0.136 4.136 22 C -0.128 4.128 23 C -0.120 4.120 24 C -0.049 4.049 25 C -0.122 4.122 26 Br -0.051 7.051 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.099 0.901 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.386 0.614 33 H 0.256 0.744 34 H 0.121 0.879 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.082 -15.045 9.457 17.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.221 6.221 3 C 0.094 3.906 4 C -0.220 4.220 5 C -0.064 4.064 6 C -0.094 4.094 7 C 0.138 3.862 8 H 0.087 0.913 9 N -0.352 5.352 10 C -0.371 4.371 11 H 0.090 0.910 12 C -0.203 4.203 13 N -0.579 5.579 14 Si 0.738 3.262 15 H -0.216 1.216 16 H -0.218 1.218 17 H -0.207 1.207 18 C -0.079 4.079 19 C -0.103 4.103 20 C -0.146 4.146 21 C -0.154 4.154 22 C -0.147 4.147 23 C -0.139 4.139 24 C -0.069 4.069 25 C -0.202 4.202 26 Br 0.034 6.966 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.117 0.883 30 H 0.151 0.849 31 H 0.153 0.847 32 H 0.221 0.779 33 H 0.066 0.934 34 H 0.139 0.861 35 H 0.131 0.869 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.481 -15.683 9.346 18.262 hybrid contribution -0.401 1.456 -0.517 1.597 sum 0.080 -14.226 8.828 16.743 Atomic orbital electron populations 1.23070 0.78394 1.03823 1.01581 1.86140 1.21263 1.26205 1.88501 1.18535 0.90641 0.84848 0.96587 1.21177 1.00002 0.91692 1.09112 1.20997 0.94424 0.97286 0.93713 1.20115 0.93661 0.95105 1.00536 1.18073 0.95834 0.85163 0.87095 0.91337 1.42483 1.10564 1.29195 1.52958 1.19206 0.94258 1.02288 1.21322 0.90977 1.24707 0.95897 0.99412 1.00319 1.69644 1.07895 1.39487 1.40894 0.86197 0.78521 0.82199 0.79332 1.21624 1.21751 1.20654 1.21031 0.93158 0.96853 0.96868 1.20955 0.98714 0.96338 0.94257 1.21090 0.98003 1.00623 0.94897 1.20962 0.93851 1.01128 0.99454 1.20973 0.97905 0.99831 0.95957 1.20986 0.97965 1.00727 0.94244 1.20794 1.00191 0.89294 0.96621 1.20857 0.90919 0.92586 1.15854 1.96610 1.69654 1.32389 1.97989 0.92580 0.92430 0.88302 0.84893 0.84708 0.77883 0.93399 0.86106 0.86939 0.87151 0.87018 0.86778 0.84596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -4.05 9.83 -19.49 -0.19 -4.24 16 3 C 0.14 2.07 6.68 -39.20 -0.26 1.80 16 4 C -0.20 -2.84 9.04 -39.44 -0.36 -3.20 16 5 C -0.05 -0.74 8.86 -39.60 -0.35 -1.09 16 6 C -0.09 -1.56 4.94 -104.61 -0.52 -2.08 16 7 C 0.25 4.74 2.69 -70.24 -0.19 4.56 16 8 H 0.07 1.31 7.80 -51.93 -0.41 0.91 16 9 N -0.71 -16.55 4.30 -55.69 -0.24 -16.79 16 10 C -0.24 -6.33 9.92 -15.06 -0.15 -6.48 16 11 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 12 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 13 N -0.93 -26.82 13.06 55.49 0.72 -26.10 16 14 Si 0.91 21.91 29.55 -169.99 -5.02 16.88 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 16 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 C -0.08 -1.37 4.91 -104.63 -0.51 -1.89 16 19 C -0.08 -1.53 9.14 -39.58 -0.36 -1.89 16 20 C -0.13 -2.05 10.05 -39.58 -0.40 -2.45 16 21 C -0.14 -2.00 10.05 -39.58 -0.40 -2.40 16 22 C -0.13 -1.90 10.05 -39.58 -0.40 -2.30 16 23 C -0.12 -1.95 9.67 -39.58 -0.38 -2.34 16 24 C -0.05 -0.75 9.40 -39.58 -0.37 -1.12 16 25 C -0.12 -1.85 6.24 -39.38 -0.25 -2.09 16 26 Br -0.05 -0.69 33.16 -68.01 -2.26 -2.95 16 27 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 28 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 29 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.13 1.54 6.30 -52.49 -0.33 1.21 16 31 H 0.14 2.24 6.48 -52.48 -0.34 1.90 16 32 H 0.39 9.36 6.04 -40.82 -0.25 9.12 16 33 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 34 H 0.12 2.30 7.29 -52.49 -0.38 1.91 16 35 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 36 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 37 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 38 H 0.11 1.63 8.04 -52.49 -0.42 1.21 16 39 H 0.14 1.88 8.03 -52.49 -0.42 1.46 16 LS Contribution 351.93 15.07 5.30 5.30 Total: -1.00 -29.82 351.93 -10.26 -40.08 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -4.58 Total: 9.84 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: -4.00 Total: -22.03 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: 0.49 Total: -42.89 kcal Atomic # 8 Polarization: -4.05 SS G_CDS: -0.19 Total: -4.24 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 35 Polarization: -0.69 SS G_CDS: -2.26 Total: -2.95 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.82 -10.26 -40.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065552500.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.816 kcal (2) G-P(sol) polarization free energy of solvation -29.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds