Wall clock time and date at job start Tue Mar 31 2020 06:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00202 * 2 1 4 4 H 1.48502 * 109.47283 * 274.97410 * 3 2 1 5 5 H 1.48507 * 109.46785 * 34.97321 * 3 2 1 6 6 H 1.48500 * 109.47522 * 154.97078 * 3 2 1 7 7 C 1.37876 * 120.00218 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00180 * 354.98679 * 7 2 1 9 9 C 1.50704 * 120.00201 * 175.26414 * 7 2 1 10 10 N 1.46497 * 109.46974 * 184.74043 * 9 7 2 11 11 C 1.34777 * 120.00410 * 85.21283 * 10 9 7 12 12 O 1.21290 * 120.00285 * 186.20279 * 11 10 9 13 13 C 1.50699 * 119.99755 * 6.19393 * 11 10 9 14 14 C 1.53002 * 109.47242 * 185.00765 * 13 11 10 15 15 C 1.50699 * 109.47242 * 179.97438 * 14 13 11 16 16 O 1.21279 * 119.99731 * 0.02562 * 15 14 13 17 17 N 1.34779 * 119.99696 * 179.97438 * 15 14 13 18 18 C 1.46504 * 119.99606 * 179.97438 * 17 15 14 19 19 C 1.53002 * 109.47151 * 180.02562 * 18 17 15 20 20 H 1.09002 * 110.45531 * 54.29740 * 19 18 17 21 21 C 1.54497 * 110.51215 * 176.90582 * 19 18 17 22 22 C 1.54481 * 104.06446 * 118.64258 * 21 19 18 23 23 O 1.44430 * 104.80147 * 23.98037 * 22 21 19 24 24 C 1.44644 * 105.36646 * 319.56448 * 23 22 21 25 25 C 1.39925 * 119.99811 * 265.20748 * 10 9 7 26 26 C 1.38873 * 120.06953 * 7.67516 * 25 10 9 27 27 C 1.38114 * 119.92364 * 179.68022 * 26 25 10 28 28 C 1.38284 * 120.07385 * 0.61234 * 27 26 25 29 29 C 1.38278 * 120.13730 * 359.68340 * 28 27 26 30 30 C 1.38109 * 120.07328 * 0.02562 * 29 28 27 31 31 H 0.96995 * 119.99877 * 0.02562 * 1 2 3 32 32 H 1.09003 * 109.46986 * 304.73580 * 9 7 2 33 33 H 1.08993 * 109.47191 * 64.73859 * 9 7 2 34 34 H 1.09004 * 109.47348 * 305.00837 * 13 11 10 35 35 H 1.09004 * 109.47206 * 65.01012 * 13 11 10 36 36 H 1.09004 * 109.47008 * 300.00280 * 14 13 11 37 37 H 1.09002 * 109.47326 * 59.99882 * 14 13 11 38 38 H 0.96999 * 120.00549 * 0.02562 * 17 15 14 39 39 H 1.09004 * 109.47395 * 300.00637 * 18 17 15 40 40 H 1.09002 * 109.47100 * 60.00337 * 18 17 15 41 41 H 1.08999 * 110.51434 * 237.28992 * 21 19 18 42 42 H 1.08999 * 110.51777 * 359.97438 * 21 19 18 43 43 H 1.09006 * 110.37198 * 142.80535 * 22 21 19 44 44 H 1.08994 * 110.37515 * 265.03323 * 22 21 19 45 45 H 1.09003 * 110.33925 * 281.59074 * 24 23 22 46 46 H 1.08995 * 110.50631 * 159.18931 * 24 23 22 47 47 H 1.07997 * 120.03803 * 359.97196 * 26 25 10 48 48 H 1.08003 * 119.96275 * 180.33925 * 27 26 25 49 49 H 1.08002 * 119.92889 * 179.70037 * 28 27 26 50 50 H 1.08008 * 119.96129 * 180.02562 * 29 28 27 51 51 H 1.08003 * 120.03129 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3916 2.1071 -1.3948 5 1 1.5031 2.6200 0.8026 6 1 3.5953 1.4122 0.5923 7 6 2.0045 -1.1940 -0.0005 8 1 1.4677 -2.1276 0.0808 9 6 3.5077 -1.1962 -0.1083 10 7 3.9886 -2.5769 -0.2007 11 6 4.0351 -3.1957 -1.3972 12 8 4.3252 -4.3716 -1.4609 13 6 3.7264 -2.4265 -2.6557 14 6 3.7275 -3.3820 -3.8507 15 6 3.4182 -2.6129 -5.1092 16 8 3.2172 -1.4181 -5.0557 17 7 3.3659 -3.2528 -6.2943 18 6 3.0647 -2.5052 -7.5177 19 6 3.0659 -3.4607 -8.7126 20 1 2.3870 -4.2946 -8.5342 21 6 2.6745 -2.7110 -10.0056 22 6 3.9141 -2.8595 -10.9155 23 8 4.5855 -4.0441 -10.4338 24 6 4.4950 -3.9764 -8.9918 25 6 4.3998 -3.2532 0.9531 26 6 4.2052 -2.6793 2.2027 27 6 4.6063 -3.3525 3.3400 28 6 5.2125 -4.5909 3.2348 29 6 5.4132 -5.1622 1.9916 30 6 5.0090 -4.4970 0.8508 31 1 -0.4850 0.8400 -0.0004 32 1 3.8088 -0.6461 -0.9999 33 1 3.9359 -0.7206 0.7740 34 1 2.7457 -1.9594 -2.5649 35 1 4.4831 -1.6564 -2.8057 36 1 4.7082 -3.8490 -3.9416 37 1 2.9708 -4.1522 -3.7008 38 1 3.5271 -4.2083 -6.3371 39 1 2.0835 -2.0391 -7.4264 40 1 3.8205 -1.7342 -7.6677 41 1 1.8036 -3.1757 -10.4678 42 1 2.4797 -1.6597 -9.7936 43 1 3.6091 -2.9919 -11.9536 44 1 4.5620 -1.9884 -10.8192 45 1 5.2340 -3.2785 -8.5981 46 1 4.6342 -4.9647 -8.5537 47 1 3.7365 -1.7099 2.2852 48 1 4.4503 -2.9092 4.3124 49 1 5.5295 -5.1131 4.1254 50 1 5.8866 -6.1298 1.9128 51 1 5.1658 -4.9440 -0.1198 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065553432.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:30 Heat of formation + Delta-G solvation = -83.541934 kcal Electronic energy + Delta-G solvation = -31780.561058 eV Core-core repulsion = 27452.146826 eV Total energy + Delta-G solvation = -4328.414233 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 360.188 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.44142 -40.10164 -39.25210 -37.86381 -35.40197 -35.38013 -32.96928 -32.62212 -32.30020 -30.40487 -29.87234 -29.49977 -27.88820 -26.58151 -24.70833 -23.20418 -23.04717 -22.05619 -21.29762 -21.06140 -20.14036 -18.87330 -17.45907 -17.21110 -17.06462 -16.79194 -16.39842 -16.15691 -16.02141 -15.60308 -15.35622 -15.22620 -14.88718 -14.31871 -14.18181 -14.04707 -13.76582 -13.45685 -13.36522 -13.07488 -13.01117 -12.67707 -12.60437 -12.51140 -12.17274 -12.11237 -11.99357 -11.76167 -11.65346 -11.38611 -11.35370 -11.11768 -11.07270 -10.88480 -10.72655 -10.69119 -10.40107 -10.21328 -9.79809 -9.79100 -9.29565 -9.20619 -8.87409 -8.74396 -8.41140 -7.24732 -6.27119 -4.30346 1.78947 1.93384 2.70064 2.96796 3.14196 3.17235 3.23616 3.26471 3.52883 3.59162 4.12963 4.23115 4.25416 4.41634 4.42353 4.65432 4.70111 4.85374 4.89333 5.00839 5.11319 5.16681 5.22247 5.30131 5.32080 5.35947 5.38291 5.39863 5.45413 5.49888 5.60436 5.65030 5.72150 5.78192 5.96746 6.01823 6.08664 6.11133 6.26518 6.35072 6.36145 6.45738 6.49759 6.61326 6.86843 6.93931 7.04796 7.15467 7.31548 7.37630 7.69512 7.90956 8.22383 8.28489 8.61031 8.78847 9.30540 10.85087 Molecular weight = 360.19amu Principal moments of inertia in cm(-1) A = 0.009944 B = 0.002345 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2815.232027 B =11936.425142 C =14278.861335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.083 3.917 3 Si 0.866 3.134 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.546 4.546 8 H 0.080 0.920 9 C 0.199 3.801 10 N -0.531 5.531 11 C 0.525 3.475 12 O -0.546 6.546 13 C -0.125 4.125 14 C -0.122 4.122 15 C 0.514 3.486 16 O -0.530 6.530 17 N -0.738 5.738 18 C 0.128 3.872 19 C -0.136 4.136 20 H 0.092 0.908 21 C -0.148 4.148 22 C 0.044 3.956 23 O -0.377 6.377 24 C 0.047 3.953 25 C 0.170 3.830 26 C -0.148 4.148 27 C -0.103 4.103 28 C -0.161 4.161 29 C -0.107 4.107 30 C -0.172 4.172 31 H 0.268 0.732 32 H 0.041 0.959 33 H 0.043 0.957 34 H 0.122 0.878 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.401 0.599 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.092 0.908 44 H 0.061 0.939 45 H 0.065 0.935 46 H 0.093 0.907 47 H 0.135 0.865 48 H 0.118 0.882 49 H 0.111 0.889 50 H 0.115 0.885 51 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.078 -6.850 -13.782 17.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.122 4.122 3 Si 0.692 3.308 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.584 4.584 8 H 0.098 0.902 9 C 0.079 3.921 10 N -0.249 5.249 11 C 0.317 3.683 12 O -0.427 6.427 13 C -0.165 4.165 14 C -0.162 4.162 15 C 0.301 3.699 16 O -0.406 6.406 17 N -0.392 5.392 18 C 0.004 3.996 19 C -0.155 4.155 20 H 0.110 0.890 21 C -0.186 4.186 22 C -0.033 4.033 23 O -0.295 6.295 24 C -0.029 4.029 25 C 0.074 3.926 26 C -0.169 4.169 27 C -0.121 4.121 28 C -0.180 4.180 29 C -0.126 4.126 30 C -0.192 4.192 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.140 0.860 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.235 0.765 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.110 0.890 44 H 0.079 0.921 45 H 0.083 0.917 46 H 0.112 0.888 47 H 0.153 0.847 48 H 0.136 0.864 49 H 0.130 0.870 50 H 0.133 0.867 51 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 8.968 -6.524 -13.986 17.849 hybrid contribution 0.006 0.812 0.306 0.868 sum 8.974 -5.711 -13.681 17.329 Atomic orbital electron populations 1.69882 1.06258 1.27374 1.48495 1.24817 0.94706 0.98835 0.93853 0.86964 0.80577 0.84070 0.79147 1.19494 1.20638 1.18742 1.21205 0.88638 0.95373 1.53186 0.90223 1.20095 0.96762 0.76710 0.98532 1.45701 1.58469 1.15973 1.04771 1.20651 0.75721 0.86816 0.85150 1.90334 1.49345 1.16231 1.86752 1.21417 1.07074 0.98155 0.89824 1.21372 1.04840 0.98971 0.91048 1.20831 0.76088 0.88147 0.84837 1.90754 1.48083 1.15142 1.86599 1.46009 1.74006 1.12257 1.06882 1.21382 1.02022 0.93880 0.82308 1.22813 0.98403 0.99195 0.95048 0.88955 1.22936 0.99275 1.01790 0.94625 1.23436 0.92441 0.88554 0.98881 1.89163 1.78089 1.42771 1.19518 1.23600 0.95229 1.02161 0.81945 1.18068 0.95325 0.92673 0.86525 1.21084 1.02944 1.02025 0.90814 1.20863 0.98568 0.95041 0.97660 1.20983 1.03162 0.96595 0.97274 1.21008 0.99859 0.99328 0.92404 1.22412 1.00139 0.94779 1.01877 0.92189 0.94153 0.93920 0.86011 0.88388 0.88311 0.88091 0.76541 0.90939 0.91243 0.90103 0.89794 0.88982 0.92082 0.91705 0.88829 0.84715 0.86417 0.87048 0.86689 0.81196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.58 13.96 55.43 0.77 -24.80 16 2 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 3 Si 0.87 19.79 27.48 -169.99 -4.67 15.12 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.26 -5.63 6.53 56.52 0.37 -5.26 16 7 C -0.55 -14.28 9.46 -34.44 -0.33 -14.61 16 8 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 9 C 0.20 4.40 3.37 -5.19 -0.02 4.38 16 10 N -0.53 -11.05 2.69 -114.74 -0.31 -11.36 16 11 C 0.52 10.16 7.53 -10.99 -0.08 10.08 16 12 O -0.55 -10.68 12.51 5.55 0.07 -10.61 16 13 C -0.12 -2.14 3.46 -27.88 -0.10 -2.24 16 14 C -0.12 -1.64 5.00 -27.88 -0.14 -1.78 16 15 C 0.51 7.03 7.83 -10.98 -0.09 6.95 16 16 O -0.53 -9.58 15.98 5.56 0.09 -9.49 16 17 N -0.74 -7.12 5.42 -60.29 -0.33 -7.45 16 18 C 0.13 1.14 4.82 -4.04 -0.02 1.12 16 19 C -0.14 -0.91 3.16 -89.06 -0.28 -1.19 16 20 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 21 C -0.15 -0.90 6.74 -25.17 -0.17 -1.07 16 22 C 0.04 0.29 7.64 37.93 0.29 0.58 16 23 O -0.38 -3.46 11.65 -35.23 -0.41 -3.87 16 24 C 0.05 0.34 6.97 37.94 0.26 0.61 16 25 C 0.17 3.43 6.48 -83.69 -0.54 2.88 16 26 C -0.15 -2.83 9.15 -39.39 -0.36 -3.19 16 27 C -0.10 -1.67 10.04 -39.61 -0.40 -2.07 16 28 C -0.16 -2.44 10.04 -39.55 -0.40 -2.83 16 29 C -0.11 -1.71 10.04 -39.61 -0.40 -2.11 16 30 C -0.17 -3.20 8.97 -39.39 -0.35 -3.56 16 31 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.04 0.86 6.08 -51.93 -0.32 0.54 16 33 H 0.04 0.93 5.45 -51.93 -0.28 0.64 16 34 H 0.12 2.43 7.41 -51.93 -0.38 2.05 16 35 H 0.10 1.60 7.80 -51.93 -0.41 1.20 16 36 H 0.10 1.14 8.05 -51.93 -0.42 0.72 16 37 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 38 H 0.40 2.74 8.38 -40.82 -0.34 2.39 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.67 8.02 -51.93 -0.42 0.25 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.47 7.73 -51.93 -0.40 0.07 16 43 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 0.48 7.78 -51.93 -0.40 0.07 16 46 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.14 2.67 6.27 -52.49 -0.33 2.34 16 48 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 49 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 50 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 51 H 0.17 3.25 4.75 -55.04 -0.26 2.98 16 LS Contribution 411.86 15.07 6.21 6.21 Total: -1.00 -32.79 411.86 -9.57 -42.36 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -7.78 Total: 9.81 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -3.21 Total: -5.91 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: 0.14 Total: -43.61 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.25 Total: -23.98 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -4.67 Total: 15.12 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -32.79 -9.57 -42.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065553432.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.184 kcal (2) G-P(sol) polarization free energy of solvation -32.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds