Wall clock time and date at job start Tue Mar 31 2020 05:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46491 * 109.47383 * 2 1 4 4 C 1.34213 * 119.37076 * 269.98200 * 3 2 1 5 5 O 1.21581 * 118.58868 * 0.02562 * 4 3 2 6 6 N 1.34396 * 122.82272 * 180.02562 * 4 3 2 7 7 H 0.97001 * 119.65600 * 179.97438 * 6 4 3 8 8 C 1.38803 * 120.68159 * 359.97438 * 6 4 3 9 9 C 1.38580 * 121.45745 * 179.97438 * 8 6 4 10 10 C 1.39272 * 119.65392 * 180.30057 * 9 8 6 11 11 C 1.48066 * 119.84568 * 179.72223 * 10 9 8 12 12 O 1.21522 * 120.00305 * 225.03461 * 11 10 9 13 13 N 1.34786 * 119.99552 * 45.02707 * 11 10 9 14 14 C 1.46501 * 119.99765 * 186.14332 * 13 11 10 15 15 C 1.50707 * 109.46689 * 90.00206 * 14 13 11 16 16 H 1.07998 * 119.99702 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99600 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00328 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99664 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47083 * 60.00520 * 19 17 15 21 21 H 1.48505 * 109.46936 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47471 * 300.00249 * 19 17 15 23 23 C 1.46493 * 119.99983 * 6.14925 * 13 11 10 24 24 C 1.52997 * 109.47180 * 124.59991 * 23 13 11 25 25 C 1.53000 * 109.46938 * 244.60092 * 23 13 11 26 26 C 1.39805 * 120.31861 * 359.44281 * 10 9 8 27 27 C 1.37732 * 120.27227 * 0.56258 * 26 10 9 28 28 C 1.39313 * 119.72282 * 359.71653 * 27 26 10 29 29 C 1.35064 * 119.36642 * 90.00197 * 3 2 1 30 30 O 1.21569 * 120.84974 * 0.02562 * 29 3 2 31 31 H 1.09001 * 109.47292 * 59.99341 * 1 2 3 32 32 H 1.09002 * 109.47737 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47385 * 299.99934 * 1 2 3 34 34 H 1.09004 * 109.46879 * 240.00076 * 2 1 3 35 35 H 1.09001 * 109.47292 * 120.00659 * 2 1 3 36 36 H 1.08001 * 120.16978 * 0.02562 * 9 8 6 37 37 H 1.09001 * 109.47055 * 210.00115 * 14 13 11 38 38 H 1.08999 * 109.47107 * 330.00977 * 14 13 11 39 39 H 0.96994 * 120.00377 * 179.97438 * 18 17 15 40 40 H 1.09007 * 109.47599 * 4.59699 * 23 13 11 41 41 H 1.09006 * 109.46909 * 60.00155 * 24 23 13 42 42 H 1.09007 * 109.47146 * 179.97438 * 24 23 13 43 43 H 1.08995 * 109.47660 * 300.00200 * 24 23 13 44 44 H 1.09006 * 109.47124 * 60.00276 * 25 23 13 45 45 H 1.09007 * 109.47088 * 180.02562 * 25 23 13 46 46 H 1.08997 * 109.47355 * 300.00191 * 25 23 13 47 47 H 1.07996 * 119.86513 * 180.28180 * 26 10 9 48 48 H 1.08005 * 120.14065 * 179.69985 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2381 2.0016 -1.1696 5 8 2.0229 1.3935 -2.2002 6 7 2.6858 3.2662 -1.2505 7 1 2.8292 3.6698 -2.1209 8 6 2.9452 4.0006 -0.1016 9 6 3.4077 5.3053 -0.1663 10 6 3.6616 6.0056 1.0105 11 6 4.1617 7.3977 0.9463 12 8 5.0799 7.7472 1.6616 13 7 3.5986 8.2774 0.0943 14 6 4.1775 9.6134 -0.0677 15 6 5.2033 9.5858 -1.1714 16 1 5.4035 8.6653 -1.6996 17 6 5.8853 10.7360 -1.5076 18 7 5.6411 11.8570 -0.8647 19 14 7.1571 10.7017 -2.8752 20 1 6.5081 10.2856 -4.1444 21 1 7.7439 12.0560 -3.0395 22 1 8.2309 9.7362 -2.5286 23 6 2.4077 7.8976 -0.6695 24 6 1.2911 8.9111 -0.4107 25 6 2.7436 7.8788 -2.1620 26 6 3.4410 5.4023 2.2523 27 6 2.9815 4.1058 2.3225 28 6 2.7308 3.3973 1.1495 29 6 2.2392 2.0055 1.1771 30 8 2.0383 1.4361 2.2322 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 3.5746 5.7752 -1.1244 37 1 3.3896 10.3225 -0.3215 38 1 4.6544 9.9181 0.8639 39 1 6.1211 12.6661 -1.1009 40 1 2.0776 6.9062 -0.3589 41 1 1.6212 9.9025 -0.7214 42 1 0.4051 8.6287 -0.9794 43 1 1.0518 8.9245 0.6526 44 1 3.5391 7.1567 -2.3464 45 1 1.8573 7.5967 -2.7304 46 1 3.0737 8.8701 -2.4727 47 1 3.6361 5.9536 3.1602 48 1 2.8164 3.6402 3.2830 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065585165.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:33 Heat of formation + Delta-G solvation = -59.284092 kcal Electronic energy + Delta-G solvation = -32932.124497 eV Core-core repulsion = 28566.647731 eV Total energy + Delta-G solvation = -4365.476766 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 359.168 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.52705 -40.19937 -39.29936 -38.48984 -36.27731 -35.79432 -35.61869 -33.01599 -32.23409 -31.11333 -30.91552 -30.02392 -27.64271 -26.92921 -25.63894 -24.38880 -23.60600 -23.01952 -22.66310 -21.54993 -20.09983 -19.17880 -18.73938 -17.82517 -17.14589 -17.00072 -16.55005 -16.52262 -15.92875 -15.60163 -15.19504 -15.00389 -14.63746 -14.57462 -14.48301 -14.13742 -13.98877 -13.78503 -13.56035 -13.46519 -12.99529 -12.87237 -12.63556 -12.54429 -12.32567 -11.90532 -11.77986 -11.58248 -11.50635 -11.41346 -11.20399 -11.15169 -11.04873 -10.95060 -10.71634 -10.64090 -10.51232 -10.17725 -10.13982 -9.69110 -9.43385 -9.10797 -8.54786 -8.50089 -7.84152 -6.12417 -4.16949 0.19777 0.85003 1.72439 1.73697 2.48358 2.65208 3.20175 3.25496 3.31333 3.33587 3.56188 3.62969 3.85469 4.24725 4.37082 4.51589 4.68697 4.74617 4.81805 4.83441 4.89191 5.03252 5.11245 5.13104 5.22059 5.33142 5.38322 5.42804 5.48743 5.50866 5.53190 5.74259 5.78558 5.90066 5.95416 6.00064 6.11878 6.13340 6.20704 6.23567 6.38681 6.48327 6.80061 6.87879 6.97234 7.09114 7.33819 7.39863 7.60266 7.82954 8.13041 8.20890 8.71184 8.89169 9.47535 10.95651 Molecular weight = 359.17amu Principal moments of inertia in cm(-1) A = 0.015574 B = 0.002716 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.467593 B =10308.610654 C =10866.695017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.106 3.894 3 N -0.557 5.557 4 C 0.707 3.293 5 O -0.545 6.545 6 N -0.642 5.642 7 H 0.436 0.564 8 C 0.190 3.810 9 C -0.139 4.139 10 C -0.036 4.036 11 C 0.542 3.458 12 O -0.525 6.525 13 N -0.580 5.580 14 C 0.244 3.756 15 C -0.526 4.526 16 H 0.058 0.942 17 C 0.063 3.937 18 N -0.893 5.893 19 Si 0.895 3.105 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.276 1.276 23 C 0.123 3.877 24 C -0.161 4.161 25 C -0.163 4.163 26 C -0.109 4.109 27 C -0.019 4.019 28 C -0.189 4.189 29 C 0.567 3.433 30 O -0.492 6.492 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.152 0.848 37 H 0.039 0.961 38 H 0.045 0.955 39 H 0.264 0.736 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.053 0.947 46 H 0.086 0.914 47 H 0.146 0.854 48 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.646 -18.202 1.069 21.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.015 4.015 3 N -0.302 5.302 4 C 0.408 3.592 5 O -0.419 6.419 6 N -0.289 5.289 7 H 0.278 0.722 8 C 0.091 3.909 9 C -0.160 4.160 10 C -0.040 4.040 11 C 0.327 3.673 12 O -0.402 6.402 13 N -0.311 5.311 14 C 0.125 3.875 15 C -0.564 4.564 16 H 0.077 0.923 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.723 3.277 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.202 1.202 23 C 0.018 3.982 24 C -0.219 4.219 25 C -0.221 4.221 26 C -0.129 4.129 27 C -0.038 4.038 28 C -0.195 4.195 29 C 0.359 3.641 30 O -0.365 6.365 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.169 0.831 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.099 0.901 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.072 0.928 46 H 0.105 0.895 47 H 0.163 0.837 48 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -11.395 -18.585 1.525 21.854 hybrid contribution 0.870 0.357 -1.308 1.611 sum -10.525 -18.229 0.217 21.050 Atomic orbital electron populations 1.22082 0.94310 1.03245 1.02778 1.21758 0.95742 0.78856 1.05123 1.46235 1.61441 1.16723 1.05828 1.15543 0.78270 0.81279 0.84066 1.91046 1.55635 1.63159 1.32021 1.42749 1.64556 1.11865 1.09729 0.72204 1.17818 0.96118 0.91678 0.85291 1.21042 1.02916 0.91898 1.00166 1.20435 0.94743 0.95635 0.93213 1.18140 0.83592 0.84129 0.81444 1.90799 1.29078 1.78037 1.42263 1.48320 1.27128 1.16378 1.39245 1.19369 0.93640 0.76238 0.98249 1.21357 1.21614 0.95570 1.17904 0.92342 1.24914 0.96904 0.95375 0.96771 1.69909 1.42092 1.00123 1.40988 0.86603 0.81812 0.77223 0.82063 1.20219 1.21199 1.20199 1.21270 0.85892 0.98377 0.92626 1.22138 0.97384 1.00872 1.01541 1.22255 1.00282 1.04826 0.94693 1.21218 0.99467 0.94548 0.97636 1.20938 0.92866 0.92844 0.97176 1.19484 1.12290 0.94387 0.93383 1.18481 0.76378 0.86190 0.83065 1.90814 1.49212 1.67153 1.29325 0.91901 0.90461 0.92002 0.88164 0.88267 0.83055 0.94265 0.93658 0.92587 0.90150 0.90971 0.92141 0.92718 0.92914 0.92850 0.89514 0.83651 0.83296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.26 10.23 37.16 0.38 -0.88 16 2 C 0.11 0.91 5.76 -4.05 -0.02 0.89 16 3 N -0.56 -5.95 2.55 -122.03 -0.31 -6.27 16 4 C 0.71 7.88 8.33 -87.76 -0.73 7.15 16 5 O -0.54 -7.10 16.49 5.29 0.09 -7.01 16 6 N -0.64 -6.18 5.35 -14.39 -0.08 -6.26 16 7 H 0.44 3.32 8.79 -40.82 -0.36 2.96 16 8 C 0.19 2.05 6.66 -83.71 -0.56 1.49 16 9 C -0.14 -1.65 7.29 -39.07 -0.28 -1.94 16 10 C -0.04 -0.51 4.94 -104.90 -0.52 -1.03 16 11 C 0.54 10.34 7.23 -12.22 -0.09 10.25 16 12 O -0.52 -12.30 16.53 5.35 0.09 -12.21 16 13 N -0.58 -11.00 2.39 -168.49 -0.40 -11.40 16 14 C 0.24 5.80 4.76 -5.19 -0.02 5.78 16 15 C -0.53 -13.58 7.85 -34.44 -0.27 -13.85 16 16 H 0.06 1.49 7.59 -52.49 -0.40 1.09 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -25.17 13.29 55.43 0.74 -24.43 16 19 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 C 0.12 1.78 2.39 -67.94 -0.16 1.61 16 24 C -0.16 -2.18 9.08 37.16 0.34 -1.84 16 25 C -0.16 -2.28 8.22 37.16 0.31 -1.98 16 26 C -0.11 -1.33 9.65 -39.18 -0.38 -1.71 16 27 C -0.02 -0.20 9.65 -39.37 -0.38 -0.58 16 28 C -0.19 -2.13 5.89 -104.80 -0.62 -2.75 16 29 C 0.57 6.61 7.65 -12.30 -0.09 6.51 16 30 O -0.49 -6.47 16.17 5.30 0.09 -6.39 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.10 0.82 7.30 -51.93 -0.38 0.44 16 35 H 0.10 0.80 7.41 -51.93 -0.38 0.41 16 36 H 0.15 1.72 5.15 -52.49 -0.27 1.45 16 37 H 0.04 0.94 6.20 -51.93 -0.32 0.62 16 38 H 0.05 1.25 7.35 -51.93 -0.38 0.87 16 39 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.08 0.99 4.79 -51.92 -0.25 0.74 16 41 H 0.07 1.12 6.53 -51.93 -0.34 0.78 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.05 0.72 6.55 -51.93 -0.34 0.38 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.09 1.50 6.92 -51.93 -0.36 1.14 16 47 H 0.15 1.69 8.06 -52.49 -0.42 1.26 16 48 H 0.15 1.36 7.79 -52.48 -0.41 0.95 16 LS Contribution 392.26 15.07 5.91 5.91 Total: -1.00 -32.53 392.26 -8.39 -40.92 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -6.29 Total: 2.68 kcal Atomic # 6 Polarization: 11.92 SS G_CDS: -3.20 Total: 8.71 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: -0.05 Total: -48.35 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: 0.26 Total: -25.61 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.53 -8.39 -40.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065585165.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.365 kcal (2) G-P(sol) polarization free energy of solvation -32.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds