Wall clock time and date at job start Tue Mar 31 2020 05:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46491 * 109.47383 * 2 1 4 4 C 1.34213 * 119.37076 * 269.98200 * 3 2 1 5 5 O 1.21581 * 118.58868 * 0.02562 * 4 3 2 6 6 N 1.34396 * 122.82272 * 180.02562 * 4 3 2 7 7 H 0.97001 * 119.65600 * 179.97438 * 6 4 3 8 8 C 1.38803 * 120.68159 * 359.97438 * 6 4 3 9 9 C 1.38580 * 121.45745 * 179.97438 * 8 6 4 10 10 C 1.39272 * 119.65392 * 180.30057 * 9 8 6 11 11 C 1.48066 * 119.84568 * 179.72223 * 10 9 8 12 12 O 1.21522 * 120.00305 * 225.03461 * 11 10 9 13 13 N 1.34786 * 119.99552 * 45.02707 * 11 10 9 14 14 C 1.46501 * 119.99765 * 186.14332 * 13 11 10 15 15 C 1.50707 * 109.46689 * 90.00206 * 14 13 11 16 16 H 1.07998 * 119.99702 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99600 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00328 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99664 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47083 * 60.00520 * 19 17 15 21 21 H 1.48505 * 109.46936 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47471 * 300.00249 * 19 17 15 23 23 C 1.46493 * 119.99983 * 6.14925 * 13 11 10 24 24 C 1.52997 * 109.47180 * 124.59991 * 23 13 11 25 25 C 1.53000 * 109.46938 * 244.60092 * 23 13 11 26 26 C 1.39805 * 120.31861 * 359.44281 * 10 9 8 27 27 C 1.37732 * 120.27227 * 0.56258 * 26 10 9 28 28 C 1.39313 * 119.72282 * 359.71653 * 27 26 10 29 29 C 1.35064 * 119.36642 * 90.00197 * 3 2 1 30 30 O 1.21569 * 120.84974 * 0.02562 * 29 3 2 31 31 H 1.09001 * 109.47292 * 59.99341 * 1 2 3 32 32 H 1.09002 * 109.47737 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47385 * 299.99934 * 1 2 3 34 34 H 1.09004 * 109.46879 * 240.00076 * 2 1 3 35 35 H 1.09001 * 109.47292 * 120.00659 * 2 1 3 36 36 H 1.08001 * 120.16978 * 0.02562 * 9 8 6 37 37 H 1.09001 * 109.47055 * 210.00115 * 14 13 11 38 38 H 1.08999 * 109.47107 * 330.00977 * 14 13 11 39 39 H 0.96994 * 120.00377 * 179.97438 * 18 17 15 40 40 H 1.09007 * 109.47599 * 4.59699 * 23 13 11 41 41 H 1.09006 * 109.46909 * 60.00155 * 24 23 13 42 42 H 1.09007 * 109.47146 * 179.97438 * 24 23 13 43 43 H 1.08995 * 109.47660 * 300.00200 * 24 23 13 44 44 H 1.09006 * 109.47124 * 60.00276 * 25 23 13 45 45 H 1.09007 * 109.47088 * 180.02562 * 25 23 13 46 46 H 1.08997 * 109.47355 * 300.00191 * 25 23 13 47 47 H 1.07996 * 119.86513 * 180.28180 * 26 10 9 48 48 H 1.08005 * 120.14065 * 179.69985 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2381 2.0016 -1.1696 5 8 2.0229 1.3935 -2.2002 6 7 2.6858 3.2662 -1.2505 7 1 2.8292 3.6698 -2.1209 8 6 2.9452 4.0006 -0.1016 9 6 3.4077 5.3053 -0.1663 10 6 3.6616 6.0056 1.0105 11 6 4.1617 7.3977 0.9463 12 8 5.0799 7.7472 1.6616 13 7 3.5986 8.2774 0.0943 14 6 4.1775 9.6134 -0.0677 15 6 5.2033 9.5858 -1.1714 16 1 5.4035 8.6653 -1.6996 17 6 5.8853 10.7360 -1.5076 18 7 5.6411 11.8570 -0.8647 19 14 7.1571 10.7017 -2.8752 20 1 6.5081 10.2856 -4.1444 21 1 7.7439 12.0560 -3.0395 22 1 8.2309 9.7362 -2.5286 23 6 2.4077 7.8976 -0.6695 24 6 1.2911 8.9111 -0.4107 25 6 2.7436 7.8788 -2.1620 26 6 3.4410 5.4023 2.2523 27 6 2.9815 4.1058 2.3225 28 6 2.7308 3.3973 1.1495 29 6 2.2392 2.0055 1.1771 30 8 2.0383 1.4361 2.2322 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 3.5746 5.7752 -1.1244 37 1 3.3896 10.3225 -0.3215 38 1 4.6544 9.9181 0.8639 39 1 6.1211 12.6661 -1.1009 40 1 2.0776 6.9062 -0.3589 41 1 1.6212 9.9025 -0.7214 42 1 0.4051 8.6287 -0.9794 43 1 1.0518 8.9245 0.6526 44 1 3.5391 7.1567 -2.3464 45 1 1.8573 7.5967 -2.7304 46 1 3.0737 8.8701 -2.4727 47 1 3.6361 5.9536 3.1602 48 1 2.8164 3.6402 3.2830 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065585165.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:32 Heat of formation + Delta-G solvation = -79.341307 kcal Electronic energy + Delta-G solvation = -32932.994243 eV Core-core repulsion = 28566.647731 eV Total energy + Delta-G solvation = -4366.346512 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 359.168 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.41709 -41.46198 -40.23997 -39.64081 -37.72128 -36.74367 -36.52817 -34.93788 -33.20569 -32.49298 -31.87248 -30.96846 -29.39700 -28.05851 -26.76321 -25.26107 -25.02147 -23.96961 -23.88009 -22.76254 -21.18978 -20.12038 -19.79247 -18.93486 -18.56402 -18.23044 -18.01146 -17.48673 -17.11969 -16.71946 -16.43791 -16.36545 -15.88681 -15.55867 -15.53375 -15.33193 -15.01209 -14.81978 -14.67871 -14.61893 -14.20013 -13.96155 -13.90583 -13.66741 -13.33759 -13.26300 -13.19208 -12.89907 -12.77899 -12.59750 -12.51354 -12.23900 -12.21857 -12.15366 -12.07220 -12.02747 -11.73717 -11.58602 -11.53175 -11.01613 -10.87450 -10.57952 -10.25533 -9.51209 -9.42952 -8.17672 -6.29329 -0.80375 -0.07447 0.79861 0.92099 1.39250 1.42548 1.44930 1.49972 1.77300 1.96700 2.16200 2.42941 2.59234 2.89693 3.13108 3.26738 3.50815 3.78000 3.89552 3.97535 3.99580 4.06560 4.11789 4.18785 4.27496 4.38307 4.43608 4.46107 4.49661 4.69070 4.80365 4.86905 4.89984 4.92952 5.00995 5.04046 5.08919 5.11360 5.16290 5.19155 5.26823 5.39245 5.43741 5.49104 5.59336 5.65006 5.85467 6.01183 6.10880 6.20261 6.66587 6.75355 6.78969 7.22537 7.41899 8.89739 Molecular weight = 359.17amu Principal moments of inertia in cm(-1) A = 0.015574 B = 0.002716 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.467593 B =10308.610654 C =10866.695017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.556 5.556 4 C 0.708 3.292 5 O -0.562 6.562 6 N -0.630 5.630 7 H 0.447 0.553 8 C 0.204 3.796 9 C -0.129 4.129 10 C -0.050 4.050 11 C 0.537 3.463 12 O -0.582 6.582 13 N -0.582 5.582 14 C 0.260 3.740 15 C -0.527 4.527 16 H 0.061 0.939 17 C 0.009 3.991 18 N -0.929 5.929 19 Si 0.959 3.041 20 H -0.259 1.259 21 H -0.285 1.285 22 H -0.279 1.279 23 C 0.117 3.883 24 C -0.159 4.159 25 C -0.159 4.159 26 C -0.106 4.106 27 C -0.005 4.005 28 C -0.189 4.189 29 C 0.569 3.431 30 O -0.507 6.507 31 H 0.053 0.947 32 H 0.098 0.902 33 H 0.053 0.947 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.159 0.841 37 H 0.032 0.968 38 H -0.003 1.003 39 H 0.265 0.735 40 H 0.111 0.889 41 H 0.043 0.957 42 H 0.096 0.904 43 H 0.053 0.947 44 H 0.056 0.944 45 H 0.092 0.908 46 H 0.049 0.951 47 H 0.146 0.854 48 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.970 -20.955 -0.327 24.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.020 4.020 3 N -0.301 5.301 4 C 0.410 3.590 5 O -0.437 6.437 6 N -0.277 5.277 7 H 0.291 0.709 8 C 0.104 3.896 9 C -0.150 4.150 10 C -0.054 4.054 11 C 0.325 3.675 12 O -0.463 6.463 13 N -0.312 5.312 14 C 0.139 3.861 15 C -0.566 4.566 16 H 0.079 0.921 17 C -0.190 4.190 18 N -0.569 5.569 19 Si 0.784 3.216 20 H -0.183 1.183 21 H -0.211 1.211 22 H -0.204 1.204 23 C 0.014 3.986 24 C -0.216 4.216 25 C -0.217 4.217 26 C -0.126 4.126 27 C -0.024 4.024 28 C -0.195 4.195 29 C 0.362 3.638 30 O -0.381 6.381 31 H 0.072 0.928 32 H 0.117 0.883 33 H 0.072 0.928 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.177 0.823 37 H 0.050 0.950 38 H 0.015 0.985 39 H 0.073 0.927 40 H 0.129 0.871 41 H 0.063 0.937 42 H 0.115 0.885 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.111 0.889 46 H 0.069 0.931 47 H 0.164 0.836 48 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -12.766 -21.367 0.084 24.890 hybrid contribution 1.209 1.119 -0.830 1.845 sum -11.556 -20.249 -0.746 23.326 Atomic orbital electron populations 1.22043 0.93433 1.04459 1.01856 1.21972 0.96470 0.77899 1.05684 1.46323 1.60961 1.17389 1.05400 1.15579 0.78091 0.81428 0.83887 1.91046 1.56451 1.63591 1.32590 1.42666 1.63778 1.11345 1.09959 0.70915 1.17612 0.95407 0.91067 0.85494 1.20919 1.02490 0.92121 0.99512 1.19976 0.97375 0.93033 0.95046 1.18841 0.82643 0.85845 0.80143 1.90757 1.31586 1.79542 1.44394 1.48301 1.28275 1.14715 1.39897 1.18795 0.93028 0.78923 0.95305 1.21631 1.21617 0.95490 1.17842 0.92100 1.25763 0.98968 0.95128 0.99157 1.70039 1.43425 1.00755 1.42715 0.85600 0.79160 0.77020 0.79851 1.18338 1.21094 1.20444 1.21646 0.84257 1.00063 0.92586 1.22125 0.98290 0.99118 1.02091 1.22214 1.02180 1.02850 0.94437 1.21229 0.99339 0.95095 0.96956 1.21047 0.91521 0.91834 0.97972 1.19633 1.11755 0.94398 0.93742 1.18461 0.76142 0.86148 0.83090 1.90816 1.49933 1.67480 1.29844 0.92768 0.88284 0.92799 0.87679 0.87630 0.82317 0.94997 0.98488 0.92653 0.87104 0.93746 0.88524 0.92790 0.92555 0.88886 0.93148 0.83576 0.81371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 10.23 71.98 0.74 -1.32 16 2 C 0.10 1.49 5.76 86.38 0.50 1.98 16 3 N -0.56 -10.46 2.55 -776.67 -1.98 -12.45 16 4 C 0.71 13.85 8.33 179.35 1.49 15.34 16 5 O -0.56 -13.22 16.49 -3.97 -0.07 -13.29 16 6 N -0.63 -10.16 5.35 -317.92 -1.70 -11.86 16 7 H 0.45 5.30 8.79 -92.71 -0.81 4.48 16 8 C 0.20 3.79 6.66 38.68 0.26 4.04 16 9 C -0.13 -2.77 7.29 22.60 0.16 -2.60 16 10 C -0.05 -1.38 4.94 -20.04 -0.10 -1.47 16 11 C 0.54 21.00 7.23 86.85 0.63 21.63 16 12 O -0.58 -28.71 16.53 -3.78 -0.06 -28.77 16 13 N -0.58 -22.60 2.39 -805.27 -1.92 -24.52 16 14 C 0.26 13.07 4.76 85.64 0.41 13.48 16 15 C -0.53 -28.04 7.85 25.60 0.20 -27.84 16 16 H 0.06 3.13 7.59 -2.91 -0.02 3.11 16 17 C 0.01 0.48 5.46 84.65 0.46 0.94 16 18 N -0.93 -54.31 13.29 21.45 0.28 -54.02 16 19 Si 0.96 43.01 29.54 68.60 2.03 45.04 16 20 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 21 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 23 C 0.12 3.23 2.39 44.99 0.11 3.34 16 24 C -0.16 -4.11 9.08 71.98 0.65 -3.45 16 25 C -0.16 -4.16 8.22 71.98 0.59 -3.57 16 26 C -0.11 -2.46 9.65 22.53 0.22 -2.24 16 27 C 0.00 -0.09 9.65 22.41 0.22 0.13 16 28 C -0.19 -3.73 5.89 -19.98 -0.12 -3.85 16 29 C 0.57 11.76 7.65 86.68 0.66 12.42 16 30 O -0.51 -12.07 16.17 -3.93 -0.06 -12.13 16 31 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.05 0.78 8.14 -2.39 -0.02 0.77 16 34 H 0.10 1.48 7.30 -2.39 -0.02 1.47 16 35 H 0.11 1.45 7.41 -2.39 -0.02 1.43 16 36 H 0.16 3.18 5.15 -2.91 -0.01 3.16 16 37 H 0.03 1.64 6.20 -2.39 -0.01 1.62 16 38 H 0.00 -0.18 7.35 -2.39 -0.02 -0.20 16 39 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 40 H 0.11 2.43 4.79 -2.38 -0.01 2.42 16 41 H 0.04 1.40 6.53 -2.38 -0.02 1.38 16 42 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 43 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.06 1.41 6.55 -2.38 -0.02 1.40 16 45 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 46 H 0.05 1.71 6.92 -2.39 -0.02 1.69 16 47 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 48 H 0.17 2.58 7.79 -2.91 -0.02 2.56 16 Total: -1.00 -73.77 392.26 3.81 -69.97 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 0.21 Total: 15.06 kcal Atomic # 6 Polarization: 19.88 SS G_CDS: 7.08 Total: 26.96 kcal Atomic # 7 Polarization: -97.52 SS G_CDS: -5.32 Total: -102.84 kcal Atomic # 8 Polarization: -54.00 SS G_CDS: -0.19 Total: -54.19 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -73.77 3.81 -69.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065585165.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.373 kcal (2) G-P(sol) polarization free energy of solvation -73.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds