Wall clock time and date at job start Tue Mar 31 2020 06:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 120.00079 * 2 1 4 4 H 1.48499 * 109.46928 * 239.99760 * 3 2 1 5 5 H 1.48499 * 109.47669 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47044 * 119.99995 * 3 2 1 7 7 C 1.37876 * 119.99309 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99529 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00292 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.46745 * 180.02562 * 9 7 2 11 11 N 1.40059 * 125.87651 * 269.99500 * 10 9 7 12 12 C 1.30246 * 109.70026 * 180.02562 * 11 10 9 13 13 C 1.41177 * 108.46803 * 359.77318 * 12 11 10 14 14 C 1.36325 * 125.87384 * 90.00241 * 10 9 7 15 15 N 1.33198 * 134.61287 * 359.97438 * 14 10 9 16 16 C 1.31508 * 120.68150 * 179.97438 * 15 14 10 17 17 N 1.32127 * 122.64433 * 0.02562 * 16 15 14 18 18 C 1.32856 * 121.19212 * 0.02562 * 17 16 15 19 19 N 1.38111 * 120.81031 * 179.97438 * 18 17 16 20 20 C 1.46500 * 119.99850 * 359.97438 * 19 18 17 21 21 C 1.53000 * 109.47087 * 179.97438 * 20 19 18 22 22 H 1.09006 * 109.47227 * 60.00301 * 21 20 19 23 23 O 1.42898 * 109.47321 * 300.00257 * 21 20 19 24 24 C 1.53000 * 109.47302 * 179.97438 * 21 20 19 25 25 N 1.46902 * 109.47506 * 180.49728 * 24 21 20 26 26 C 1.46840 * 111.00315 * 200.06803 * 25 24 21 27 27 C 1.53035 * 109.52507 * 174.15924 * 26 25 24 28 28 C 1.53122 * 109.27634 * 59.17648 * 27 26 25 29 29 C 1.53122 * 109.16092 * 302.34256 * 28 27 26 30 30 C 1.46846 * 110.99730 * 75.85091 * 25 24 21 31 31 H 0.97005 * 119.99311 * 0.02562 * 1 2 3 32 32 H 1.08995 * 109.46693 * 60.00251 * 9 7 2 33 33 H 1.09003 * 109.46950 * 299.99767 * 9 7 2 34 34 H 1.07997 * 125.77068 * 179.97438 * 12 11 10 35 35 H 1.08000 * 118.67574 * 179.97438 * 16 15 14 36 36 H 0.97002 * 120.00080 * 179.97438 * 19 18 17 37 37 H 1.09005 * 109.47268 * 60.00081 * 20 19 18 38 38 H 1.08993 * 109.47031 * 299.99592 * 20 19 18 39 39 H 0.96696 * 113.99794 * 299.99594 * 23 21 20 40 40 H 1.08998 * 109.47009 * 300.49753 * 24 21 20 41 41 H 1.09001 * 109.46678 * 60.49814 * 24 21 20 42 42 H 1.09003 * 109.45859 * 294.17380 * 26 25 24 43 43 H 1.08995 * 109.46655 * 54.13701 * 26 25 24 44 44 H 1.08995 * 109.50174 * 299.23565 * 27 26 25 45 45 H 1.09002 * 109.50512 * 179.11673 * 27 26 25 46 46 H 1.09006 * 109.52307 * 182.44284 * 28 27 26 47 47 H 1.08997 * 109.52419 * 62.25300 * 28 27 26 48 48 H 1.08990 * 109.50332 * 297.71481 * 29 28 27 49 49 H 1.09005 * 109.50103 * 177.59554 * 29 28 27 50 50 H 1.09000 * 109.46882 * 305.85498 * 30 25 24 51 51 H 1.08994 * 109.46465 * 65.82865 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2028 -3.6127 0.0018 11 7 2.7370 -4.2371 -1.1324 12 6 3.5492 -5.1881 -0.7685 13 6 3.5886 -5.2271 0.6422 14 6 2.7211 -4.2194 1.1071 15 7 2.5773 -4.0513 2.4206 16 6 3.2289 -4.8149 3.2702 17 7 4.0491 -5.7750 2.8814 18 6 4.2599 -6.0200 1.5927 19 7 5.1194 -7.0253 1.1951 20 6 5.8122 -7.8364 2.1993 21 6 6.6957 -8.8705 1.4986 22 1 7.4294 -8.3590 0.8754 23 8 5.8833 -9.7156 0.6815 24 6 7.4197 -9.7172 2.5473 25 7 8.2771 -10.7022 1.8745 26 6 8.6091 -11.8133 2.7753 27 6 9.3781 -12.8867 2.0017 28 6 10.6568 -12.2744 1.4232 29 6 10.2858 -11.0895 0.5271 30 6 9.4906 -10.0682 1.3436 31 1 -0.4849 0.8401 -0.0004 32 1 0.6246 -2.5570 -0.8897 33 1 0.6239 -2.5567 0.8903 34 1 4.1019 -5.8351 -1.4335 35 1 3.0885 -4.6500 4.3282 36 1 5.2644 -7.1943 0.2510 37 1 5.0786 -8.3482 2.8222 38 1 6.4316 -7.1917 2.8227 39 1 5.2066 -10.2032 1.1708 40 1 8.0327 -9.0711 3.1757 41 1 6.6864 -10.2355 3.1651 42 1 9.2258 -11.4445 3.5949 43 1 7.6910 -12.2424 3.1766 44 1 8.7568 -13.2658 1.1904 45 1 9.6380 -13.7041 2.6743 46 1 11.1859 -13.0242 0.8350 47 1 11.2960 -11.9302 2.2362 48 1 9.6789 -11.4404 -0.3074 49 1 11.1943 -10.6229 0.1462 50 1 9.2127 -9.2299 0.7048 51 1 10.1031 -9.7075 2.1698 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065594494.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:00 Heat of formation + Delta-G solvation = 61.518260 kcal Electronic energy + Delta-G solvation = -31426.482919 eV Core-core repulsion = 27168.944471 eV Total energy + Delta-G solvation = -4257.538448 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 360.201 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.35455 -39.75872 -38.55058 -37.78271 -35.68467 -33.89034 -33.70159 -32.27843 -31.31382 -31.26212 -30.54643 -28.97998 -27.25299 -26.00790 -23.96202 -23.82377 -23.49061 -23.03269 -22.08539 -21.67712 -20.13562 -20.02606 -18.00542 -17.54912 -16.84307 -16.61841 -16.53388 -16.29987 -16.05920 -15.33543 -15.17981 -14.94444 -14.83119 -14.58476 -14.43112 -14.13831 -13.90620 -13.71242 -13.68651 -13.52889 -13.32696 -13.06244 -12.83934 -12.57872 -12.12591 -12.08483 -11.64953 -11.64059 -11.44503 -11.19215 -11.16427 -10.98742 -10.94891 -10.87786 -10.78793 -10.72736 -10.31755 -10.27071 -10.06314 -9.83282 -9.24373 -8.72142 -8.66184 -8.57517 -8.19346 -7.61235 -6.20109 -4.26569 1.33194 1.96244 2.87789 3.03778 3.11501 3.27510 3.30404 3.35503 3.43331 4.13690 4.23296 4.32649 4.33761 4.42032 4.42943 4.50592 4.61619 4.64136 4.73436 4.77401 4.80391 4.94434 4.99437 5.03247 5.07596 5.14597 5.15449 5.16109 5.21724 5.30030 5.39038 5.43991 5.49533 5.50538 5.61505 5.69827 5.70557 5.74045 5.75119 5.94018 6.33208 6.59165 6.64587 6.70672 6.94199 7.05179 7.13255 7.26551 7.37050 7.53391 7.74157 7.92504 7.95006 8.25906 8.73344 8.84544 9.38231 10.88059 Molecular weight = 360.20amu Principal moments of inertia in cm(-1) A = 0.022379 B = 0.001649 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.847030 B =16977.221769 C =17192.900946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.067 3.933 3 Si 0.907 3.093 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.534 4.534 8 H 0.061 0.939 9 C 0.264 3.736 10 N -0.332 5.332 11 N -0.244 5.244 12 C 0.070 3.930 13 C -0.337 4.337 14 C 0.363 3.637 15 N -0.554 5.554 16 C 0.366 3.634 17 N -0.621 5.621 18 C 0.509 3.491 19 N -0.700 5.700 20 C 0.101 3.899 21 C 0.102 3.898 22 H 0.102 0.898 23 O -0.543 6.543 24 C 0.026 3.974 25 N -0.527 5.527 26 C 0.056 3.944 27 C -0.117 4.117 28 C -0.122 4.122 29 C -0.117 4.117 30 C 0.054 3.946 31 H 0.268 0.732 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.183 0.817 35 H 0.194 0.806 36 H 0.414 0.586 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.374 0.626 40 H 0.048 0.952 41 H 0.081 0.919 42 H 0.031 0.969 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.057 0.943 48 H 0.073 0.927 49 H 0.065 0.935 50 H 0.076 0.924 51 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.986 -26.069 6.189 32.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.734 3.266 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.573 4.573 8 H 0.079 0.921 9 C 0.147 3.853 10 N -0.119 5.119 11 N -0.059 5.059 12 C -0.125 4.125 13 C -0.355 4.355 14 C 0.115 3.885 15 N -0.279 5.279 16 C 0.072 3.928 17 N -0.352 5.352 18 C 0.256 3.744 19 N -0.334 5.334 20 C -0.024 4.024 21 C 0.041 3.959 22 H 0.120 0.880 23 O -0.348 6.348 24 C -0.103 4.103 25 N -0.251 5.251 26 C -0.072 4.072 27 C -0.155 4.155 28 C -0.160 4.160 29 C -0.155 4.155 30 C -0.074 4.074 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.200 0.800 35 H 0.211 0.789 36 H 0.251 0.749 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.221 0.779 40 H 0.066 0.934 41 H 0.099 0.901 42 H 0.049 0.951 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.076 0.924 48 H 0.092 0.908 49 H 0.084 0.916 50 H 0.094 0.906 51 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 18.134 -24.968 5.302 31.311 hybrid contribution 1.089 0.606 0.741 1.450 sum 19.224 -24.363 6.043 31.616 Atomic orbital electron populations 1.69916 1.05989 1.27706 1.49291 1.24894 0.94985 0.99328 0.94452 0.86401 0.79438 0.81888 0.78848 1.20039 1.20882 1.19985 1.21214 0.93511 0.89713 1.52816 0.92120 1.19784 0.85695 0.79839 0.99979 1.49463 1.35843 1.27748 0.98811 1.76943 1.11555 1.08083 1.09360 1.23390 0.98995 0.97804 0.92348 1.19612 1.12604 1.07937 0.95360 1.18940 0.91096 0.89971 0.88508 1.67512 1.29635 1.30784 0.99989 1.24391 0.85233 0.84055 0.99148 1.67935 1.26823 1.25850 1.14583 1.17900 0.84207 0.84069 0.88200 1.44122 1.46132 1.33889 1.09279 1.21936 0.95928 0.93246 0.91319 1.22121 0.91955 0.89308 0.92468 0.88013 1.86614 1.49796 1.61228 1.37153 1.22712 0.97190 0.94735 0.95684 1.61774 1.17113 1.09739 1.36472 1.22106 0.99460 0.92088 0.93514 1.21580 0.96515 0.97147 1.00222 1.21587 0.97310 0.97874 0.99220 1.21577 0.99402 0.95865 0.98643 1.22147 0.90147 0.97000 0.98101 0.92227 0.92801 0.92269 0.80025 0.78932 0.74900 0.91149 0.90766 0.77883 0.93357 0.90102 0.95104 0.90752 0.90917 0.91651 0.91814 0.92433 0.90848 0.91601 0.90605 0.95041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.94 13.29 55.43 0.74 -25.20 16 2 C 0.07 1.89 5.46 -17.82 -0.10 1.80 16 3 Si 0.91 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 7 C -0.53 -15.40 9.39 -34.44 -0.32 -15.73 16 8 H 0.06 1.80 7.81 -52.48 -0.41 1.39 16 9 C 0.26 7.13 6.19 -5.19 -0.03 7.09 16 10 N -0.33 -8.07 3.63 -61.64 -0.22 -8.29 16 11 N -0.24 -5.31 12.45 30.80 0.38 -4.92 16 12 C 0.07 1.21 11.87 -17.11 -0.20 1.01 16 13 C -0.34 -6.21 6.14 -106.82 -0.66 -6.87 16 14 C 0.36 8.10 8.04 -156.22 -1.26 6.84 16 15 N -0.55 -11.78 10.47 -13.97 -0.15 -11.93 16 16 C 0.37 6.15 12.24 -92.11 -1.13 5.02 16 17 N -0.62 -9.76 9.69 -13.62 -0.13 -9.89 16 18 C 0.51 7.84 7.55 -154.85 -1.17 6.67 16 19 N -0.70 -7.65 5.57 -60.08 -0.33 -7.98 16 20 C 0.10 0.83 5.39 -4.04 -0.02 0.81 16 21 C 0.10 0.67 3.11 -26.73 -0.08 0.59 16 22 H 0.10 0.73 6.83 -51.93 -0.35 0.37 16 23 O -0.54 -4.18 12.96 -35.23 -0.46 -4.64 16 24 C 0.03 0.15 4.67 -3.82 -0.02 0.13 16 25 N -0.53 -3.43 4.46 -234.68 -1.05 -4.48 16 26 C 0.06 0.32 5.43 -3.84 -0.02 0.30 16 27 C -0.12 -0.62 6.09 -26.65 -0.16 -0.78 16 28 C -0.12 -0.64 6.00 -26.61 -0.16 -0.80 16 29 C -0.12 -0.68 6.09 -26.65 -0.16 -0.85 16 30 C 0.05 0.34 5.29 -3.83 -0.02 0.32 16 31 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.05 1.50 8.14 -51.93 -0.42 1.08 16 33 H 0.06 1.67 8.14 -51.93 -0.42 1.25 16 34 H 0.18 2.22 8.06 -52.49 -0.42 1.79 16 35 H 0.19 2.44 8.06 -52.49 -0.42 2.02 16 36 H 0.41 4.02 8.21 -40.82 -0.34 3.69 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.37 2.00 9.05 45.56 0.41 2.41 16 40 H 0.05 0.27 8.00 -51.93 -0.42 -0.14 16 41 H 0.08 0.40 7.79 -51.93 -0.40 -0.01 16 42 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 43 H 0.07 0.39 7.93 -51.93 -0.41 -0.03 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 48 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.08 0.50 6.72 -51.93 -0.35 0.15 16 51 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 LS Contribution 416.80 15.07 6.28 6.28 Total: -1.00 -33.91 416.80 -12.80 -46.70 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -7.32 Total: 1.96 kcal Atomic # 6 Polarization: 11.06 SS G_CDS: -5.51 Total: 5.55 kcal Atomic # 7 Polarization: -71.94 SS G_CDS: -0.76 Total: -72.70 kcal Atomic # 8 Polarization: -4.18 SS G_CDS: -0.46 Total: -4.64 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -33.91 -12.80 -46.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065594494.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.223 kcal (2) G-P(sol) polarization free energy of solvation -33.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds