Wall clock time and date at job start Tue Mar 31 2020 06:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86795 * 120.00079 * 2 1 4 4 H 1.48499 * 109.46928 * 239.99760 * 3 2 1 5 5 H 1.48499 * 109.47669 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47044 * 119.99995 * 3 2 1 7 7 C 1.37876 * 119.99309 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99529 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00292 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.46745 * 180.02562 * 9 7 2 11 11 N 1.40059 * 125.87651 * 269.99500 * 10 9 7 12 12 C 1.30246 * 109.70026 * 180.02562 * 11 10 9 13 13 C 1.41177 * 108.46803 * 359.77318 * 12 11 10 14 14 C 1.36325 * 125.87384 * 90.00241 * 10 9 7 15 15 N 1.33198 * 134.61287 * 359.97438 * 14 10 9 16 16 C 1.31508 * 120.68150 * 179.97438 * 15 14 10 17 17 N 1.32127 * 122.64433 * 0.02562 * 16 15 14 18 18 C 1.32856 * 121.19212 * 0.02562 * 17 16 15 19 19 N 1.38111 * 120.81031 * 179.97438 * 18 17 16 20 20 C 1.46500 * 119.99850 * 359.97438 * 19 18 17 21 21 C 1.53000 * 109.47087 * 179.97438 * 20 19 18 22 22 H 1.09006 * 109.47227 * 60.00301 * 21 20 19 23 23 O 1.42898 * 109.47321 * 300.00257 * 21 20 19 24 24 C 1.53000 * 109.47302 * 179.97438 * 21 20 19 25 25 N 1.46902 * 109.47506 * 180.49728 * 24 21 20 26 26 C 1.46840 * 111.00315 * 200.06803 * 25 24 21 27 27 C 1.53035 * 109.52507 * 174.15924 * 26 25 24 28 28 C 1.53122 * 109.27634 * 59.17648 * 27 26 25 29 29 C 1.53122 * 109.16092 * 302.34256 * 28 27 26 30 30 C 1.46846 * 110.99730 * 75.85091 * 25 24 21 31 31 H 0.97005 * 119.99311 * 0.02562 * 1 2 3 32 32 H 1.08995 * 109.46693 * 60.00251 * 9 7 2 33 33 H 1.09003 * 109.46950 * 299.99767 * 9 7 2 34 34 H 1.07997 * 125.77068 * 179.97438 * 12 11 10 35 35 H 1.08000 * 118.67574 * 179.97438 * 16 15 14 36 36 H 0.97002 * 120.00080 * 179.97438 * 19 18 17 37 37 H 1.09005 * 109.47268 * 60.00081 * 20 19 18 38 38 H 1.08993 * 109.47031 * 299.99592 * 20 19 18 39 39 H 0.96696 * 113.99794 * 299.99594 * 23 21 20 40 40 H 1.08998 * 109.47009 * 300.49753 * 24 21 20 41 41 H 1.09001 * 109.46678 * 60.49814 * 24 21 20 42 42 H 1.09003 * 109.45859 * 294.17380 * 26 25 24 43 43 H 1.08995 * 109.46655 * 54.13701 * 26 25 24 44 44 H 1.08995 * 109.50174 * 299.23565 * 27 26 25 45 45 H 1.09002 * 109.50512 * 179.11673 * 27 26 25 46 46 H 1.09006 * 109.52307 * 182.44284 * 28 27 26 47 47 H 1.08997 * 109.52419 * 62.25300 * 28 27 26 48 48 H 1.08990 * 109.50332 * 297.71481 * 29 28 27 49 49 H 1.09005 * 109.50103 * 177.59554 * 29 28 27 50 50 H 1.09000 * 109.46882 * 305.85498 * 30 25 24 51 51 H 1.08994 * 109.46465 * 65.82865 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2028 -3.6127 0.0018 11 7 2.7370 -4.2371 -1.1324 12 6 3.5492 -5.1881 -0.7685 13 6 3.5886 -5.2271 0.6422 14 6 2.7211 -4.2194 1.1071 15 7 2.5773 -4.0513 2.4206 16 6 3.2289 -4.8149 3.2702 17 7 4.0491 -5.7750 2.8814 18 6 4.2599 -6.0200 1.5927 19 7 5.1194 -7.0253 1.1951 20 6 5.8122 -7.8364 2.1993 21 6 6.6957 -8.8705 1.4986 22 1 7.4294 -8.3590 0.8754 23 8 5.8833 -9.7156 0.6815 24 6 7.4197 -9.7172 2.5473 25 7 8.2771 -10.7022 1.8745 26 6 8.6091 -11.8133 2.7753 27 6 9.3781 -12.8867 2.0017 28 6 10.6568 -12.2744 1.4232 29 6 10.2858 -11.0895 0.5271 30 6 9.4906 -10.0682 1.3436 31 1 -0.4849 0.8401 -0.0004 32 1 0.6246 -2.5570 -0.8897 33 1 0.6239 -2.5567 0.8903 34 1 4.1019 -5.8351 -1.4335 35 1 3.0885 -4.6500 4.3282 36 1 5.2644 -7.1943 0.2510 37 1 5.0786 -8.3482 2.8222 38 1 6.4316 -7.1917 2.8227 39 1 5.2066 -10.2032 1.1708 40 1 8.0327 -9.0711 3.1757 41 1 6.6864 -10.2355 3.1651 42 1 9.2258 -11.4445 3.5949 43 1 7.6910 -12.2424 3.1766 44 1 8.7568 -13.2658 1.1904 45 1 9.6380 -13.7041 2.6743 46 1 11.1859 -13.0242 0.8350 47 1 11.2960 -11.9302 2.2362 48 1 9.6789 -11.4404 -0.3074 49 1 11.1943 -10.6229 0.1462 50 1 9.2127 -9.2299 0.7048 51 1 10.1031 -9.7075 2.1698 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065594494.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:59 Heat of formation + Delta-G solvation = 37.473526 kcal Electronic energy + Delta-G solvation = -31427.525577 eV Core-core repulsion = 27168.944471 eV Total energy + Delta-G solvation = -4258.581106 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 360.201 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.80662 -40.30575 -39.80444 -38.54635 -36.72892 -35.68833 -34.35323 -33.76575 -32.90208 -31.78800 -31.58026 -29.98307 -29.13872 -26.79253 -25.52973 -25.02661 -24.32167 -23.91341 -23.26678 -22.27564 -21.48800 -20.57480 -19.38773 -18.80115 -18.73258 -17.77922 -17.52526 -17.13172 -16.70753 -16.63283 -16.46599 -15.99527 -15.66230 -15.38851 -15.29280 -15.10127 -15.04500 -14.87247 -14.82316 -14.43700 -14.21261 -14.04894 -13.75563 -13.68351 -13.57971 -13.10081 -13.04822 -12.74962 -12.54917 -12.38616 -12.37079 -12.28876 -12.09749 -11.94462 -11.80600 -11.60519 -11.50707 -11.31893 -11.22065 -10.87239 -10.75823 -10.61094 -10.06718 -9.76556 -9.17991 -8.97352 -8.35331 -6.52547 -0.02620 0.53380 1.32639 1.37370 1.39563 1.48712 1.63647 1.97534 2.31769 2.88098 2.94221 3.01958 3.29041 3.40606 3.61594 3.67237 3.72509 3.87241 3.89939 3.97695 4.07172 4.09735 4.13443 4.22903 4.35185 4.43795 4.46598 4.54231 4.62933 4.69897 4.73360 4.78720 4.83277 4.87050 4.88511 4.95005 5.04817 5.09880 5.14046 5.17849 5.26528 5.32657 5.47319 5.50514 5.54712 5.75364 5.78044 5.96944 6.11830 6.16966 6.19698 6.52470 6.58165 6.78356 6.94013 7.16829 7.46009 8.72092 Molecular weight = 360.20amu Principal moments of inertia in cm(-1) A = 0.022379 B = 0.001649 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.847030 B =16977.221769 C =17192.900946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.020 3.980 3 Si 0.975 3.025 4 H -0.269 1.269 5 H -0.268 1.268 6 H -0.271 1.271 7 C -0.554 4.554 8 H 0.046 0.954 9 C 0.285 3.715 10 N -0.367 5.367 11 N -0.291 5.291 12 C 0.100 3.900 13 C -0.347 4.347 14 C 0.337 3.663 15 N -0.606 5.606 16 C 0.376 3.624 17 N -0.614 5.614 18 C 0.517 3.483 19 N -0.677 5.677 20 C 0.102 3.898 21 C 0.116 3.884 22 H 0.099 0.901 23 O -0.557 6.557 24 C 0.029 3.971 25 N -0.536 5.536 26 C 0.055 3.945 27 C -0.116 4.116 28 C -0.122 4.122 29 C -0.116 4.116 30 C 0.053 3.947 31 H 0.274 0.726 32 H 0.031 0.969 33 H 0.033 0.967 34 H 0.236 0.764 35 H 0.231 0.769 36 H 0.423 0.577 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.385 0.615 40 H 0.052 0.948 41 H 0.091 0.909 42 H 0.031 0.969 43 H 0.080 0.920 44 H 0.062 0.938 45 H 0.075 0.925 46 H 0.068 0.932 47 H 0.059 0.941 48 H 0.061 0.939 49 H 0.071 0.929 50 H 0.072 0.928 51 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.479 -27.656 7.033 35.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.181 4.181 3 Si 0.799 3.201 4 H -0.194 1.194 5 H -0.193 1.193 6 H -0.196 1.196 7 C -0.592 4.592 8 H 0.064 0.936 9 C 0.166 3.834 10 N -0.153 5.153 11 N -0.106 5.106 12 C -0.095 4.095 13 C -0.365 4.365 14 C 0.090 3.910 15 N -0.333 5.333 16 C 0.083 3.917 17 N -0.345 5.345 18 C 0.263 3.737 19 N -0.309 5.309 20 C -0.022 4.022 21 C 0.055 3.945 22 H 0.117 0.883 23 O -0.363 6.363 24 C -0.100 4.100 25 N -0.261 5.261 26 C -0.072 4.072 27 C -0.153 4.153 28 C -0.159 4.159 29 C -0.154 4.154 30 C -0.075 4.075 31 H 0.083 0.917 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.252 0.748 35 H 0.247 0.753 36 H 0.262 0.738 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.233 0.767 40 H 0.070 0.930 41 H 0.110 0.890 42 H 0.049 0.951 43 H 0.098 0.902 44 H 0.081 0.919 45 H 0.094 0.906 46 H 0.086 0.914 47 H 0.078 0.922 48 H 0.080 0.920 49 H 0.090 0.910 50 H 0.091 0.909 51 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 20.673 -26.638 6.140 34.274 hybrid contribution 0.439 0.843 0.569 1.108 sum 21.112 -25.796 6.709 34.002 Atomic orbital electron populations 1.70014 1.07378 1.28955 1.49343 1.25803 0.95924 1.02851 0.93528 0.85354 0.78332 0.77503 0.78954 1.19410 1.19283 1.19605 1.21365 0.92882 0.91206 1.53745 0.93618 1.19113 0.85961 0.80900 0.97426 1.49103 1.37242 1.28519 1.00450 1.76890 1.14163 1.10374 1.09156 1.24239 0.96493 0.95980 0.92754 1.19762 1.12754 1.07875 0.96139 1.19359 0.91909 0.90904 0.88813 1.67528 1.32231 1.33347 1.00205 1.25188 0.83573 0.82780 1.00146 1.68095 1.26605 1.25470 1.14363 1.18001 0.83971 0.84198 0.87547 1.44264 1.44001 1.32051 1.10591 1.22118 0.96076 0.93202 0.90834 1.21965 0.91353 0.88800 0.92358 0.88334 1.86597 1.50333 1.61446 1.37961 1.22675 0.97314 0.94672 0.95344 1.61768 1.17254 1.10115 1.36962 1.22137 0.99796 0.91891 0.93390 1.21572 0.96299 0.97386 1.00082 1.21585 0.97382 0.97739 0.99210 1.21566 0.99427 0.96098 0.98334 1.22153 0.90257 0.97007 0.98089 0.91687 0.95144 0.94937 0.74755 0.75301 0.73848 0.90429 0.90556 0.76660 0.92988 0.89018 0.95064 0.90190 0.91888 0.90615 0.91376 0.92234 0.92005 0.90990 0.90944 0.95005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.01 13.29 21.45 0.28 -54.73 16 2 C 0.02 1.15 5.46 84.65 0.46 1.61 16 3 Si 0.98 45.35 29.54 68.60 2.03 47.38 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 6 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.55 -33.41 9.39 25.60 0.24 -33.17 16 8 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 9 C 0.28 16.45 6.19 85.63 0.53 16.98 16 10 N -0.37 -18.69 3.63 -348.94 -1.27 -19.95 16 11 N -0.29 -12.96 12.45 -56.46 -0.70 -13.66 16 12 C 0.10 3.35 11.87 85.65 1.02 4.37 16 13 C -0.35 -12.48 6.14 -21.29 -0.13 -12.61 16 14 C 0.34 15.44 8.04 134.14 1.08 16.51 16 15 N -0.61 -26.27 10.47 -198.10 -2.07 -28.34 16 16 C 0.38 12.21 12.24 180.87 2.21 14.42 16 17 N -0.61 -17.93 9.69 -197.01 -1.91 -19.84 16 18 C 0.52 14.76 7.55 133.64 1.01 15.77 16 19 N -0.68 -12.58 5.57 -344.01 -1.92 -14.49 16 20 C 0.10 1.33 5.39 86.38 0.47 1.79 16 21 C 0.12 1.17 3.11 30.59 0.10 1.27 16 22 H 0.10 1.12 6.83 -2.38 -0.02 1.11 16 23 O -0.56 -6.91 12.96 -148.98 -1.93 -8.84 16 24 C 0.03 0.25 4.67 86.30 0.40 0.65 16 25 N -0.54 -5.82 4.46 -896.39 -4.00 -9.82 16 26 C 0.06 0.51 5.43 86.33 0.47 0.98 16 27 C -0.12 -1.02 6.09 30.65 0.19 -0.84 16 28 C -0.12 -1.08 6.00 30.68 0.18 -0.89 16 29 C -0.12 -1.20 6.09 30.65 0.19 -1.01 16 30 C 0.05 0.58 5.29 86.33 0.46 1.03 16 31 H 0.27 15.24 8.31 -92.70 -0.77 14.46 16 32 H 0.03 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.03 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.24 4.87 8.06 -2.91 -0.02 4.85 16 35 H 0.23 5.34 8.06 -2.91 -0.02 5.31 16 36 H 0.42 6.63 8.21 -92.71 -0.76 5.87 16 37 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.38 2.94 9.05 -74.06 -0.67 2.27 16 40 H 0.05 0.43 8.00 -2.39 -0.02 0.41 16 41 H 0.09 0.61 7.79 -2.39 -0.02 0.59 16 42 H 0.03 0.29 8.14 -2.39 -0.02 0.27 16 43 H 0.08 0.64 7.93 -2.39 -0.02 0.63 16 44 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 47 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 48 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 50 H 0.07 0.83 6.72 -2.39 -0.02 0.81 16 51 H 0.03 0.34 8.14 -2.39 -0.02 0.33 16 Total: -1.00 -77.43 416.80 -3.09 -80.53 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -0.47 Total: 14.91 kcal Atomic # 6 Polarization: 18.00 SS G_CDS: 8.87 Total: 26.87 kcal Atomic # 7 Polarization: -149.26 SS G_CDS: -11.58 Total: -160.84 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -1.93 Total: -8.84 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -77.43 -3.09 -80.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065594494.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.000 kcal (2) G-P(sol) polarization free energy of solvation -77.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds