Wall clock time and date at job start Tue Mar 31 2020 06:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99999 * 2 1 4 4 H 1.48493 * 109.47211 * 270.00105 * 3 2 1 5 5 H 1.48503 * 109.47145 * 30.00023 * 3 2 1 6 6 H 1.48500 * 109.46996 * 149.99654 * 3 2 1 7 7 C 1.37872 * 119.99936 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99938 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00421 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47650 * 180.02562 * 9 7 2 11 11 N 1.40063 * 125.87494 * 270.00391 * 10 9 7 12 12 C 1.30250 * 109.69773 * 179.97438 * 11 10 9 13 13 C 1.41169 * 108.46591 * 359.76465 * 12 11 10 14 14 C 1.36315 * 125.87297 * 89.99611 * 10 9 7 15 15 N 1.33195 * 134.61514 * 0.02562 * 14 10 9 16 16 C 1.31506 * 120.68198 * 179.97438 * 15 14 10 17 17 N 1.32125 * 122.64664 * 359.97438 * 16 15 14 18 18 C 1.32857 * 121.19329 * 359.97438 * 17 16 15 19 19 N 1.38105 * 120.81486 * 179.97438 * 18 17 16 20 20 C 1.46501 * 119.99982 * 0.02562 * 19 18 17 21 21 C 1.52996 * 109.47461 * 180.02562 * 20 19 18 22 22 H 1.09004 * 109.47368 * 304.99963 * 21 20 19 23 23 O 1.42903 * 109.47126 * 64.99618 * 21 20 19 24 24 C 1.52993 * 109.47473 * 184.99751 * 21 20 19 25 25 N 1.46906 * 109.47378 * 179.97438 * 24 21 20 26 26 C 1.46845 * 110.99951 * 294.21172 * 25 24 21 27 27 C 1.53037 * 109.52225 * 174.15937 * 26 25 24 28 28 C 1.53120 * 109.27746 * 59.17801 * 27 26 25 29 29 C 1.53114 * 109.16254 * 302.34805 * 28 27 26 30 30 C 1.46845 * 110.99877 * 169.99905 * 25 24 21 31 31 H 0.96996 * 119.99515 * 359.97438 * 1 2 3 32 32 H 1.09005 * 109.47017 * 59.99859 * 9 7 2 33 33 H 1.09003 * 109.47205 * 300.00031 * 9 7 2 34 34 H 1.08001 * 125.76168 * 179.97438 * 12 11 10 35 35 H 1.07997 * 118.67737 * 179.97438 * 16 15 14 36 36 H 0.97005 * 120.00529 * 180.02562 * 19 18 17 37 37 H 1.08993 * 109.47143 * 59.99666 * 20 19 18 38 38 H 1.09007 * 109.46917 * 299.99947 * 20 19 18 39 39 H 0.96698 * 113.99903 * 60.00531 * 23 21 20 40 40 H 1.09004 * 109.46862 * 59.99962 * 24 21 20 41 41 H 1.09000 * 109.47250 * 299.99985 * 24 21 20 42 42 H 1.08998 * 109.46500 * 294.17496 * 26 25 24 43 43 H 1.08995 * 109.46400 * 54.14290 * 26 25 24 44 44 H 1.09001 * 109.50550 * 299.23861 * 27 26 25 45 45 H 1.08996 * 109.50309 * 179.12374 * 27 26 25 46 46 H 1.09004 * 109.52106 * 182.43883 * 28 27 26 47 47 H 1.09000 * 109.57245 * 62.28514 * 28 27 26 48 48 H 1.08996 * 109.50286 * 297.71173 * 29 28 27 49 49 H 1.08999 * 109.50331 * 177.59868 * 29 28 27 50 50 H 1.08995 * 109.46773 * 305.85989 * 30 25 24 51 51 H 1.09008 * 109.46221 * 65.82587 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 7 2.7365 -4.2365 -1.1355 12 6 3.5498 -5.1870 -0.7726 13 6 3.5908 -5.2261 0.6380 14 6 2.7222 -4.2198 1.1041 15 7 2.5789 -4.0527 2.4177 16 6 3.2314 -4.8164 3.2664 17 7 4.0514 -5.7763 2.8766 18 6 4.2602 -6.0217 1.5877 19 7 5.1194 -7.0267 1.1889 20 6 5.8133 -7.8380 2.1922 21 6 6.6972 -8.8709 1.4903 22 1 6.0917 -9.4580 0.7997 23 8 7.7304 -8.2002 0.7659 24 6 7.3248 -9.7980 2.5331 25 7 8.1730 -10.7902 1.8591 26 6 7.3678 -11.6900 1.0234 27 6 8.2930 -12.6127 0.2268 28 6 9.1564 -13.4233 1.1974 29 6 9.9482 -12.4624 2.0885 30 6 8.9750 -11.5440 2.8311 31 1 -0.4849 0.8400 0.0004 32 1 0.6241 -2.5567 -0.8903 33 1 0.6248 -2.5571 0.8897 34 1 4.1022 -5.8335 -1.4384 35 1 3.0914 -4.6524 4.3246 36 1 5.2635 -7.1955 0.2446 37 1 5.0805 -8.3500 2.8156 38 1 6.4333 -7.1933 2.8153 39 1 8.3095 -7.6576 1.3185 40 1 6.5366 -10.3096 3.0856 41 1 7.9303 -9.2110 3.2236 42 1 6.7161 -12.2897 1.6588 43 1 6.7617 -11.1011 0.3351 44 1 8.9356 -12.0144 -0.4191 45 1 7.6947 -13.2909 -0.3816 46 1 9.8472 -14.0504 0.6338 47 1 8.5170 -14.0518 1.8174 48 1 10.6168 -11.8617 1.4720 49 1 10.5325 -13.0332 2.8102 50 1 9.5363 -10.8490 3.4557 51 1 8.3158 -12.1444 3.4582 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065594497.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:05 Heat of formation + Delta-G solvation = 62.240017 kcal Electronic energy + Delta-G solvation = -31452.244503 eV Core-core repulsion = 27194.737352 eV Total energy + Delta-G solvation = -4257.507151 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 360.201 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.36117 -39.79559 -38.54843 -37.77252 -35.70955 -33.88826 -33.70670 -32.28868 -31.32080 -31.26653 -30.53555 -28.96634 -27.25734 -26.02179 -24.00826 -23.86560 -23.47923 -23.03835 -22.08661 -21.63718 -20.13627 -20.02768 -18.01837 -17.56385 -16.85581 -16.64654 -16.50752 -16.30766 -16.05122 -15.38371 -15.10422 -15.01559 -14.80601 -14.61862 -14.41106 -14.16037 -13.90431 -13.71042 -13.69434 -13.54966 -13.28354 -13.09916 -12.83971 -12.52950 -12.18483 -12.12330 -11.64574 -11.64325 -11.45597 -11.19230 -11.15987 -10.97554 -10.96367 -10.85880 -10.76118 -10.72635 -10.31466 -10.26690 -10.07035 -9.81760 -9.24923 -8.72527 -8.66957 -8.58064 -8.19897 -7.61938 -6.20408 -4.26778 1.32540 1.95684 2.87598 3.02773 3.11389 3.25744 3.31174 3.37421 3.42663 4.12720 4.21363 4.32602 4.34218 4.41517 4.42986 4.49480 4.61430 4.62685 4.69768 4.76769 4.80956 4.95528 4.98999 5.02510 5.08543 5.14941 5.16054 5.17172 5.21474 5.29331 5.39369 5.42824 5.50058 5.51000 5.60053 5.69882 5.70198 5.73936 5.75199 5.94355 6.32592 6.59097 6.64672 6.69954 6.93031 7.04711 7.12647 7.25577 7.36522 7.52654 7.73973 7.92122 7.94367 8.25232 8.73443 8.84125 9.38202 10.87829 Molecular weight = 360.20amu Principal moments of inertia in cm(-1) A = 0.024253 B = 0.001644 C = 0.001627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.208792 B =17022.771764 C =17207.739102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.067 3.933 3 Si 0.907 3.093 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.533 4.533 8 H 0.061 0.939 9 C 0.263 3.737 10 N -0.332 5.332 11 N -0.243 5.243 12 C 0.069 3.931 13 C -0.337 4.337 14 C 0.363 3.637 15 N -0.554 5.554 16 C 0.366 3.634 17 N -0.621 5.621 18 C 0.509 3.491 19 N -0.701 5.701 20 C 0.102 3.898 21 C 0.099 3.901 22 H 0.103 0.897 23 O -0.544 6.544 24 C 0.026 3.974 25 N -0.526 5.526 26 C 0.052 3.948 27 C -0.117 4.117 28 C -0.122 4.122 29 C -0.117 4.117 30 C 0.055 3.945 31 H 0.268 0.732 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.183 0.817 35 H 0.194 0.806 36 H 0.413 0.587 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.376 0.624 40 H 0.046 0.954 41 H 0.082 0.918 42 H 0.031 0.969 43 H 0.078 0.922 44 H 0.073 0.927 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.057 0.943 48 H 0.072 0.928 49 H 0.065 0.935 50 H 0.074 0.926 51 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.705 -26.989 5.918 32.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.572 4.572 8 H 0.080 0.920 9 C 0.147 3.853 10 N -0.119 5.119 11 N -0.059 5.059 12 C -0.126 4.126 13 C -0.355 4.355 14 C 0.115 3.885 15 N -0.279 5.279 16 C 0.072 3.928 17 N -0.352 5.352 18 C 0.256 3.744 19 N -0.335 5.335 20 C -0.024 4.024 21 C 0.039 3.961 22 H 0.121 0.879 23 O -0.349 6.349 24 C -0.103 4.103 25 N -0.251 5.251 26 C -0.075 4.075 27 C -0.154 4.154 28 C -0.160 4.160 29 C -0.154 4.154 30 C -0.072 4.072 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.200 0.800 35 H 0.211 0.789 36 H 0.250 0.750 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.223 0.777 40 H 0.064 0.936 41 H 0.101 0.899 42 H 0.049 0.951 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.084 0.916 46 H 0.082 0.918 47 H 0.076 0.924 48 H 0.091 0.909 49 H 0.084 0.916 50 H 0.092 0.908 51 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 16.773 -25.991 5.093 31.350 hybrid contribution 0.536 0.225 0.604 0.838 sum 17.308 -25.766 5.697 31.558 Atomic orbital electron populations 1.69920 1.05999 1.27606 1.49396 1.24895 0.94981 0.99348 0.94451 0.86339 0.79716 0.82217 0.78291 1.20348 1.20807 1.19767 1.21253 0.93566 0.89692 1.52677 0.92047 1.19791 0.85700 0.79867 0.99977 1.49462 1.35834 1.27744 0.98812 1.76945 1.11582 1.08077 1.09331 1.23386 0.98952 0.97866 0.92352 1.19613 1.12637 1.07896 0.95358 1.18937 0.91071 0.89988 0.88512 1.67510 1.29631 1.30751 1.00010 1.24391 0.85211 0.84055 0.99159 1.67933 1.26833 1.25857 1.14541 1.17899 0.84189 0.84078 0.88211 1.44132 1.45890 1.34233 1.09207 1.21943 0.95928 0.93173 0.91316 1.22159 0.88448 0.91666 0.93853 0.87935 1.86610 1.44643 1.65836 1.37761 1.22706 0.96522 0.94949 0.96092 1.61808 1.24886 1.15759 1.22626 1.22153 0.94876 0.94190 0.96308 1.21570 0.98351 0.97668 0.97855 1.21587 0.98767 0.97683 0.97965 1.21575 0.97766 0.97198 0.98906 1.22097 0.95747 0.95949 0.93442 0.92281 0.92807 0.92264 0.80038 0.78920 0.74994 0.90766 0.91044 0.77697 0.93626 0.89913 0.95114 0.90404 0.90846 0.91609 0.91827 0.92436 0.90942 0.91645 0.90752 0.95075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.94 13.29 55.43 0.74 -25.20 16 2 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 3 Si 0.91 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.53 -15.39 9.39 -34.44 -0.32 -15.71 16 8 H 0.06 1.82 7.81 -52.48 -0.41 1.41 16 9 C 0.26 7.11 6.19 -5.20 -0.03 7.08 16 10 N -0.33 -8.06 3.63 -61.64 -0.22 -8.28 16 11 N -0.24 -5.29 12.45 30.80 0.38 -4.91 16 12 C 0.07 1.20 11.87 -17.11 -0.20 1.00 16 13 C -0.34 -6.20 6.14 -106.81 -0.66 -6.85 16 14 C 0.36 8.09 8.04 -156.23 -1.26 6.84 16 15 N -0.55 -11.76 10.47 -13.97 -0.15 -11.91 16 16 C 0.37 6.14 12.24 -92.12 -1.13 5.01 16 17 N -0.62 -9.74 9.69 -13.62 -0.13 -9.88 16 18 C 0.51 7.82 7.55 -154.85 -1.17 6.65 16 19 N -0.70 -7.62 5.63 -60.08 -0.34 -7.96 16 20 C 0.10 0.83 5.37 -4.04 -0.02 0.81 16 21 C 0.10 0.65 2.88 -26.74 -0.08 0.57 16 22 H 0.10 0.70 6.43 -51.93 -0.33 0.37 16 23 O -0.54 -4.26 13.15 -35.23 -0.46 -4.72 16 24 C 0.03 0.15 4.62 -3.82 -0.02 0.13 16 25 N -0.53 -3.45 4.52 -234.67 -1.06 -4.51 16 26 C 0.05 0.34 5.29 -3.83 -0.02 0.32 16 27 C -0.12 -0.69 6.09 -26.65 -0.16 -0.85 16 28 C -0.12 -0.64 6.00 -26.61 -0.16 -0.80 16 29 C -0.12 -0.62 6.09 -26.65 -0.16 -0.78 16 30 C 0.06 0.32 5.46 -3.84 -0.02 0.30 16 31 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.05 1.50 8.14 -51.93 -0.42 1.07 16 33 H 0.06 1.67 8.14 -51.93 -0.42 1.25 16 34 H 0.18 2.20 8.06 -52.49 -0.42 1.77 16 35 H 0.19 2.44 8.06 -52.49 -0.42 2.01 16 36 H 0.41 3.96 8.34 -40.82 -0.34 3.62 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.38 2.11 9.05 45.56 0.41 2.52 16 40 H 0.05 0.26 8.12 -51.93 -0.42 -0.17 16 41 H 0.08 0.42 7.99 -51.93 -0.41 0.01 16 42 H 0.03 0.20 8.14 -51.93 -0.42 -0.23 16 43 H 0.08 0.52 6.21 -51.93 -0.32 0.20 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 48 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 50 H 0.07 0.39 8.02 -51.93 -0.42 -0.02 16 51 H 0.03 0.18 8.14 -51.92 -0.42 -0.24 16 LS Contribution 416.47 15.07 6.28 6.28 Total: -1.00 -33.98 416.47 -12.80 -46.78 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -7.30 Total: 1.97 kcal Atomic # 6 Polarization: 11.00 SS G_CDS: -5.51 Total: 5.49 kcal Atomic # 7 Polarization: -71.86 SS G_CDS: -0.78 Total: -72.65 kcal Atomic # 8 Polarization: -4.26 SS G_CDS: -0.46 Total: -4.72 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -33.98 -12.80 -46.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065594497.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.020 kcal (2) G-P(sol) polarization free energy of solvation -33.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds