Wall clock time and date at job start Tue Mar 31 2020 06:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99999 * 2 1 4 4 H 1.48493 * 109.47211 * 270.00105 * 3 2 1 5 5 H 1.48503 * 109.47145 * 30.00023 * 3 2 1 6 6 H 1.48500 * 109.46996 * 149.99654 * 3 2 1 7 7 C 1.37872 * 119.99936 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99938 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00421 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47650 * 180.02562 * 9 7 2 11 11 N 1.40063 * 125.87494 * 270.00391 * 10 9 7 12 12 C 1.30250 * 109.69773 * 179.97438 * 11 10 9 13 13 C 1.41169 * 108.46591 * 359.76465 * 12 11 10 14 14 C 1.36315 * 125.87297 * 89.99611 * 10 9 7 15 15 N 1.33195 * 134.61514 * 0.02562 * 14 10 9 16 16 C 1.31506 * 120.68198 * 179.97438 * 15 14 10 17 17 N 1.32125 * 122.64664 * 359.97438 * 16 15 14 18 18 C 1.32857 * 121.19329 * 359.97438 * 17 16 15 19 19 N 1.38105 * 120.81486 * 179.97438 * 18 17 16 20 20 C 1.46501 * 119.99982 * 0.02562 * 19 18 17 21 21 C 1.52996 * 109.47461 * 180.02562 * 20 19 18 22 22 H 1.09004 * 109.47368 * 304.99963 * 21 20 19 23 23 O 1.42903 * 109.47126 * 64.99618 * 21 20 19 24 24 C 1.52993 * 109.47473 * 184.99751 * 21 20 19 25 25 N 1.46906 * 109.47378 * 179.97438 * 24 21 20 26 26 C 1.46845 * 110.99951 * 294.21172 * 25 24 21 27 27 C 1.53037 * 109.52225 * 174.15937 * 26 25 24 28 28 C 1.53120 * 109.27746 * 59.17801 * 27 26 25 29 29 C 1.53114 * 109.16254 * 302.34805 * 28 27 26 30 30 C 1.46845 * 110.99877 * 169.99905 * 25 24 21 31 31 H 0.96996 * 119.99515 * 359.97438 * 1 2 3 32 32 H 1.09005 * 109.47017 * 59.99859 * 9 7 2 33 33 H 1.09003 * 109.47205 * 300.00031 * 9 7 2 34 34 H 1.08001 * 125.76168 * 179.97438 * 12 11 10 35 35 H 1.07997 * 118.67737 * 179.97438 * 16 15 14 36 36 H 0.97005 * 120.00529 * 180.02562 * 19 18 17 37 37 H 1.08993 * 109.47143 * 59.99666 * 20 19 18 38 38 H 1.09007 * 109.46917 * 299.99947 * 20 19 18 39 39 H 0.96698 * 113.99903 * 60.00531 * 23 21 20 40 40 H 1.09004 * 109.46862 * 59.99962 * 24 21 20 41 41 H 1.09000 * 109.47250 * 299.99985 * 24 21 20 42 42 H 1.08998 * 109.46500 * 294.17496 * 26 25 24 43 43 H 1.08995 * 109.46400 * 54.14290 * 26 25 24 44 44 H 1.09001 * 109.50550 * 299.23861 * 27 26 25 45 45 H 1.08996 * 109.50309 * 179.12374 * 27 26 25 46 46 H 1.09004 * 109.52106 * 182.43883 * 28 27 26 47 47 H 1.09000 * 109.57245 * 62.28514 * 28 27 26 48 48 H 1.08996 * 109.50286 * 297.71173 * 29 28 27 49 49 H 1.08999 * 109.50331 * 177.59868 * 29 28 27 50 50 H 1.08995 * 109.46773 * 305.85989 * 30 25 24 51 51 H 1.09008 * 109.46221 * 65.82587 * 30 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 7 2.7365 -4.2365 -1.1355 12 6 3.5498 -5.1870 -0.7726 13 6 3.5908 -5.2261 0.6380 14 6 2.7222 -4.2198 1.1041 15 7 2.5789 -4.0527 2.4177 16 6 3.2314 -4.8164 3.2664 17 7 4.0514 -5.7763 2.8766 18 6 4.2602 -6.0217 1.5877 19 7 5.1194 -7.0267 1.1889 20 6 5.8133 -7.8380 2.1922 21 6 6.6972 -8.8709 1.4903 22 1 6.0917 -9.4580 0.7997 23 8 7.7304 -8.2002 0.7659 24 6 7.3248 -9.7980 2.5331 25 7 8.1730 -10.7902 1.8591 26 6 7.3678 -11.6900 1.0234 27 6 8.2930 -12.6127 0.2268 28 6 9.1564 -13.4233 1.1974 29 6 9.9482 -12.4624 2.0885 30 6 8.9750 -11.5440 2.8311 31 1 -0.4849 0.8400 0.0004 32 1 0.6241 -2.5567 -0.8903 33 1 0.6248 -2.5571 0.8897 34 1 4.1022 -5.8335 -1.4384 35 1 3.0914 -4.6524 4.3246 36 1 5.2635 -7.1955 0.2446 37 1 5.0805 -8.3500 2.8156 38 1 6.4333 -7.1933 2.8153 39 1 8.3095 -7.6576 1.3185 40 1 6.5366 -10.3096 3.0856 41 1 7.9303 -9.2110 3.2236 42 1 6.7161 -12.2897 1.6588 43 1 6.7617 -11.1011 0.3351 44 1 8.9356 -12.0144 -0.4191 45 1 7.6947 -13.2909 -0.3816 46 1 9.8472 -14.0504 0.6338 47 1 8.5170 -14.0518 1.8174 48 1 10.6168 -11.8617 1.4720 49 1 10.5325 -13.0332 2.8102 50 1 9.5363 -10.8490 3.4557 51 1 8.3158 -12.1444 3.4582 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065594497.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:04 Heat of formation + Delta-G solvation = 38.001191 kcal Electronic energy + Delta-G solvation = -31453.295577 eV Core-core repulsion = 27194.737352 eV Total energy + Delta-G solvation = -4258.558225 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 360.201 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.80997 -40.34266 -39.80959 -38.52924 -36.75086 -35.69340 -34.35554 -33.77397 -32.90786 -31.80161 -31.57224 -29.96331 -29.14036 -26.80114 -25.53804 -25.03503 -24.40355 -23.90071 -23.27639 -22.23158 -21.48582 -20.57354 -19.39363 -18.80541 -18.74486 -17.79552 -17.53523 -17.12581 -16.71967 -16.59101 -16.51467 -15.98150 -15.69576 -15.38768 -15.26576 -15.13732 -15.03978 -14.89739 -14.81414 -14.46244 -14.21493 -14.01834 -13.78512 -13.69674 -13.57383 -13.05622 -13.03300 -12.75232 -12.64861 -12.40418 -12.35214 -12.30389 -12.09408 -11.95652 -11.79421 -11.59819 -11.51200 -11.29520 -11.19748 -10.86983 -10.75955 -10.61481 -10.06954 -9.76858 -9.18778 -8.97849 -8.35657 -6.52786 -0.02977 0.53065 1.32703 1.36021 1.39622 1.49843 1.63357 1.97265 2.31696 2.88017 2.93972 3.01674 3.28489 3.40391 3.60563 3.65859 3.71164 3.86109 3.89712 3.97154 4.05927 4.09410 4.14254 4.18196 4.35847 4.43468 4.47960 4.53983 4.63432 4.71180 4.72975 4.78015 4.82983 4.86678 4.87657 4.95024 5.05639 5.09833 5.13049 5.17857 5.26627 5.32931 5.47405 5.50541 5.54447 5.74935 5.77861 5.96479 6.11262 6.16562 6.19330 6.52477 6.57705 6.77908 6.92086 7.16774 7.45670 8.71996 Molecular weight = 360.20amu Principal moments of inertia in cm(-1) A = 0.024253 B = 0.001644 C = 0.001627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.208792 B =17022.771764 C =17207.739102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.020 3.980 3 Si 0.976 3.024 4 H -0.267 1.267 5 H -0.269 1.269 6 H -0.274 1.274 7 C -0.553 4.553 8 H 0.045 0.955 9 C 0.285 3.715 10 N -0.367 5.367 11 N -0.291 5.291 12 C 0.100 3.900 13 C -0.347 4.347 14 C 0.337 3.663 15 N -0.605 5.605 16 C 0.376 3.624 17 N -0.614 5.614 18 C 0.517 3.483 19 N -0.678 5.678 20 C 0.102 3.898 21 C 0.112 3.888 22 H 0.103 0.897 23 O -0.558 6.558 24 C 0.029 3.971 25 N -0.536 5.536 26 C 0.052 3.948 27 C -0.116 4.116 28 C -0.122 4.122 29 C -0.115 4.115 30 C 0.055 3.945 31 H 0.274 0.726 32 H 0.031 0.969 33 H 0.033 0.967 34 H 0.237 0.763 35 H 0.231 0.769 36 H 0.422 0.578 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.385 0.615 40 H 0.050 0.950 41 H 0.092 0.908 42 H 0.031 0.969 43 H 0.074 0.926 44 H 0.061 0.939 45 H 0.072 0.928 46 H 0.068 0.932 47 H 0.059 0.941 48 H 0.062 0.938 49 H 0.075 0.925 50 H 0.079 0.921 51 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.183 -28.557 6.702 35.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.181 4.181 3 Si 0.799 3.201 4 H -0.192 1.192 5 H -0.193 1.193 6 H -0.199 1.199 7 C -0.591 4.591 8 H 0.064 0.936 9 C 0.166 3.834 10 N -0.153 5.153 11 N -0.106 5.106 12 C -0.095 4.095 13 C -0.365 4.365 14 C 0.090 3.910 15 N -0.333 5.333 16 C 0.083 3.917 17 N -0.345 5.345 18 C 0.263 3.737 19 N -0.310 5.310 20 C -0.022 4.022 21 C 0.052 3.948 22 H 0.120 0.880 23 O -0.364 6.364 24 C -0.100 4.100 25 N -0.261 5.261 26 C -0.076 4.076 27 C -0.154 4.154 28 C -0.159 4.159 29 C -0.153 4.153 30 C -0.073 4.073 31 H 0.083 0.917 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.253 0.747 35 H 0.247 0.753 36 H 0.261 0.739 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.234 0.766 40 H 0.068 0.932 41 H 0.110 0.890 42 H 0.049 0.951 43 H 0.093 0.907 44 H 0.080 0.920 45 H 0.090 0.910 46 H 0.086 0.914 47 H 0.078 0.922 48 H 0.081 0.919 49 H 0.094 0.906 50 H 0.098 0.902 51 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 19.304 -27.634 5.870 34.216 hybrid contribution -0.095 0.470 0.453 0.660 sum 19.209 -27.164 6.323 33.865 Atomic orbital electron populations 1.70015 1.07374 1.28899 1.49430 1.25799 0.95918 1.02854 0.93526 0.85293 0.78228 0.77737 0.78808 1.19210 1.19316 1.19878 1.21390 0.92880 0.91213 1.53645 0.93648 1.19118 0.85962 0.80908 0.97438 1.49101 1.37235 1.28517 1.00454 1.76892 1.14191 1.10372 1.09114 1.24243 0.96441 0.96035 0.92754 1.19764 1.12770 1.07842 0.96147 1.19360 0.91895 0.90928 0.88821 1.67526 1.32227 1.33312 1.00230 1.25188 0.83556 0.82783 1.00160 1.68094 1.26619 1.25479 1.14334 1.18001 0.83953 0.84211 0.87557 1.44276 1.43780 1.32363 1.10538 1.22125 0.96029 0.93182 0.90843 1.22020 0.87927 0.91034 0.93787 0.87967 1.86594 1.45024 1.66182 1.38648 1.22671 0.96723 0.94750 0.95807 1.61812 1.25145 1.16062 1.23061 1.22156 0.94930 0.94232 0.96300 1.21560 0.98289 0.97666 0.97875 1.21585 0.98789 0.97653 0.97899 1.21569 0.97631 0.97140 0.98983 1.22128 0.95728 0.96081 0.93356 0.91686 0.95126 0.94922 0.74720 0.75292 0.73890 0.90315 0.90609 0.76569 0.93196 0.88975 0.95070 0.90746 0.92020 0.90985 0.91376 0.92239 0.91879 0.90608 0.90237 0.95050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.99 13.29 21.45 0.28 -54.70 16 2 C 0.02 1.15 5.46 84.65 0.46 1.61 16 3 Si 0.98 45.43 29.54 68.60 2.03 47.46 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 7 C -0.55 -33.39 9.39 25.60 0.24 -33.15 16 8 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 9 C 0.28 16.42 6.19 85.63 0.53 16.95 16 10 N -0.37 -18.67 3.63 -348.94 -1.27 -19.93 16 11 N -0.29 -12.92 12.45 -56.46 -0.70 -13.63 16 12 C 0.10 3.33 11.87 85.65 1.02 4.35 16 13 C -0.35 -12.46 6.14 -21.28 -0.13 -12.59 16 14 C 0.34 15.42 8.04 134.15 1.08 16.50 16 15 N -0.61 -26.25 10.47 -198.11 -2.07 -28.32 16 16 C 0.38 12.21 12.24 180.87 2.21 14.42 16 17 N -0.61 -17.93 9.69 -197.01 -1.91 -19.84 16 18 C 0.52 14.74 7.55 133.65 1.01 15.75 16 19 N -0.68 -12.52 5.63 -344.01 -1.94 -14.45 16 20 C 0.10 1.33 5.37 86.38 0.46 1.79 16 21 C 0.11 1.13 2.88 30.59 0.09 1.22 16 22 H 0.10 1.09 6.43 -2.39 -0.02 1.07 16 23 O -0.56 -7.12 13.15 -148.98 -1.96 -9.08 16 24 C 0.03 0.25 4.62 86.30 0.40 0.65 16 25 N -0.54 -5.86 4.52 -896.37 -4.06 -9.91 16 26 C 0.05 0.57 5.29 86.33 0.46 1.02 16 27 C -0.12 -1.20 6.09 30.65 0.19 -1.02 16 28 C -0.12 -1.08 6.00 30.67 0.18 -0.90 16 29 C -0.12 -1.03 6.09 30.64 0.19 -0.84 16 30 C 0.05 0.52 5.46 86.33 0.47 0.99 16 31 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 32 H 0.03 1.85 8.14 -2.38 -0.02 1.83 16 33 H 0.03 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.24 4.82 8.06 -2.91 -0.02 4.80 16 35 H 0.23 5.33 8.06 -2.91 -0.02 5.31 16 36 H 0.42 6.50 8.34 -92.70 -0.77 5.72 16 37 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 39 H 0.39 3.19 9.05 -74.06 -0.67 2.52 16 40 H 0.05 0.41 8.12 -2.38 -0.02 0.39 16 41 H 0.09 0.65 7.99 -2.39 -0.02 0.63 16 42 H 0.03 0.34 8.14 -2.39 -0.02 0.32 16 43 H 0.07 0.85 6.21 -2.39 -0.01 0.84 16 44 H 0.06 0.78 8.14 -2.39 -0.02 0.77 16 45 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 47 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 48 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 49 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 50 H 0.08 0.66 8.02 -2.39 -0.02 0.64 16 51 H 0.03 0.30 8.14 -2.38 -0.02 0.28 16 Total: -1.00 -77.60 416.47 -3.22 -80.82 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -0.48 Total: 14.84 kcal Atomic # 6 Polarization: 17.89 SS G_CDS: 8.86 Total: 26.75 kcal Atomic # 7 Polarization: -149.13 SS G_CDS: -11.66 Total: -160.78 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -1.96 Total: -9.08 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -77.60 -3.22 -80.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065594497.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.820 kcal (2) G-P(sol) polarization free energy of solvation -77.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds