Wall clock time and date at job start Tue Mar 31 2020 05:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47212 * 2 1 4 4 C 1.52998 * 109.46998 * 120.00418 * 2 1 3 5 5 N 1.46499 * 109.46913 * 174.99761 * 4 2 1 6 6 C 1.46497 * 120.00379 * 269.99723 * 5 4 2 7 7 C 1.53000 * 109.47251 * 270.00282 * 6 5 4 8 8 F 1.39896 * 109.46917 * 59.99775 * 7 6 5 9 9 F 1.39903 * 109.46939 * 179.97438 * 7 6 5 10 10 F 1.39899 * 109.47090 * 299.99792 * 7 6 5 11 11 C 1.34778 * 119.99843 * 90.00001 * 5 4 2 12 12 O 1.21278 * 120.00017 * 359.97438 * 11 5 4 13 13 C 1.50709 * 120.00010 * 180.02562 * 11 5 4 14 14 O 1.42892 * 109.47081 * 179.97438 * 13 11 5 15 15 C 1.35676 * 116.99828 * 179.97438 * 14 13 11 16 16 C 1.39314 * 119.81822 * 0.25190 * 15 14 13 17 17 C 1.36432 * 120.18227 * 180.25822 * 16 15 14 18 18 C 1.40835 * 119.81478 * 359.46739 * 17 16 15 19 19 C 1.41216 * 120.18043 * 180.29829 * 18 17 16 20 20 H 1.08000 * 120.00010 * 24.54163 * 19 18 17 21 21 C 1.39897 * 119.99842 * 204.54407 * 19 18 17 22 22 N 1.30875 * 120.00270 * 17.92084 * 21 19 18 23 23 Si 1.86801 * 119.99742 * 197.92451 * 21 19 18 24 24 H 1.48496 * 109.47062 * 89.99872 * 23 21 19 25 25 H 1.48500 * 109.47007 * 210.00030 * 23 21 19 26 26 H 1.48499 * 109.47008 * 329.99607 * 23 21 19 27 27 C 1.40833 * 119.64165 * 0.28134 * 18 17 16 28 28 C 1.36440 * 119.81129 * 0.02562 * 27 18 17 29 29 H 1.09003 * 109.47149 * 299.99726 * 1 2 3 30 30 H 1.09006 * 109.47558 * 59.99773 * 1 2 3 31 31 H 1.09001 * 109.47302 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46673 * 240.00057 * 2 1 3 33 33 H 1.09003 * 109.46840 * 60.00085 * 3 2 1 34 34 H 1.08993 * 109.46847 * 180.02562 * 3 2 1 35 35 H 1.09006 * 109.47045 * 300.00541 * 3 2 1 36 36 H 1.09001 * 109.47253 * 55.00041 * 4 2 1 37 37 H 1.08996 * 109.47200 * 294.99663 * 4 2 1 38 38 H 1.09009 * 109.46509 * 30.00107 * 6 5 4 39 39 H 1.08997 * 109.47556 * 149.99515 * 6 5 4 40 40 H 1.09004 * 109.46643 * 59.99681 * 13 11 5 41 41 H 1.08997 * 109.46552 * 300.00072 * 13 11 5 42 42 H 1.07997 * 119.90740 * 0.03002 * 16 15 14 43 43 H 1.07999 * 120.09181 * 179.74972 * 17 16 15 44 44 H 0.97001 * 120.00621 * 179.97438 * 22 21 19 45 45 H 1.08002 * 120.09678 * 180.02562 * 27 18 17 46 46 H 1.07994 * 119.91031 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8265 1.1904 6 6 4.1258 -1.9920 0.5611 7 6 4.3454 -3.0825 1.6116 8 9 3.1141 -3.4545 2.1619 9 9 4.9424 -4.1957 1.0104 10 9 5.1798 -2.5945 2.6229 11 6 4.2675 0.1491 1.7155 12 8 3.7495 1.1141 2.2362 13 6 5.7695 0.0412 1.6546 14 8 6.3549 1.1890 2.2723 15 6 7.7101 1.2484 2.3025 16 6 8.4613 0.2186 1.7405 17 6 9.8244 0.2681 1.7713 18 6 10.4717 1.3698 2.3635 19 6 11.8822 1.4321 2.3940 20 1 12.4626 0.8921 1.6606 21 6 12.5276 2.1933 3.3744 22 7 11.8808 2.5553 4.4530 23 14 14.3128 2.6929 3.1439 24 1 14.3742 3.9999 2.4418 25 1 14.9686 2.8125 4.4709 26 1 15.0146 1.6634 2.3359 27 6 9.7049 2.4092 2.9246 28 6 8.3426 2.3413 2.8911 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8901 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6054 -1.7199 1.2950 37 1 1.7517 -0.1585 2.1369 38 1 3.4756 -2.3722 -0.2269 39 1 5.0850 -1.7022 0.1322 40 1 6.0879 -0.0129 0.6135 41 1 6.0907 -0.8582 2.1800 42 1 7.9632 -0.6232 1.2824 43 1 10.4053 -0.5330 1.3388 44 1 12.3284 3.0828 5.1330 45 1 10.1937 3.2577 3.3802 46 1 7.7530 3.1377 3.3206 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065622190.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:46 Heat of formation + Delta-G solvation = -209.806374 kcal Electronic energy + Delta-G solvation = -32929.625088 eV Core-core repulsion = 27983.471695 eV Total energy + Delta-G solvation = -4946.153394 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 359.150 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -50.41072 -47.92067 -47.90672 -40.48826 -38.70221 -36.89847 -36.18249 -35.04934 -33.34912 -30.15513 -29.82709 -29.20993 -28.63247 -27.35458 -25.87951 -24.65357 -23.99376 -21.46586 -20.77704 -20.49389 -19.79097 -18.87944 -18.78161 -18.01450 -17.59862 -17.30660 -16.66383 -16.40896 -15.86638 -15.21065 -14.99122 -14.91600 -14.79812 -14.63800 -14.54722 -14.30151 -14.02388 -14.01105 -13.97698 -13.50533 -13.40266 -13.34465 -12.94414 -12.89289 -12.65487 -12.40789 -12.23928 -12.16659 -12.10973 -11.72359 -11.55250 -11.43648 -11.15800 -11.14862 -10.99225 -10.91168 -10.68185 -10.04885 -9.88989 -9.83585 -9.35943 -9.25037 -9.05472 -7.67281 -7.07573 -6.74251 -4.28181 2.07212 2.25651 2.58156 2.75562 2.92545 3.08145 3.11244 3.19565 3.43542 3.54818 3.66075 3.93924 4.03649 4.39680 4.45076 4.54235 4.58636 4.63066 4.67254 4.76260 5.10338 5.19696 5.26380 5.33774 5.40558 5.53374 5.62223 5.64710 5.69416 5.80667 5.89513 5.98290 6.07192 6.18682 6.23833 6.65317 6.78264 6.94834 7.07617 7.15484 7.41264 7.52574 7.74017 7.89463 7.98418 8.17766 8.38632 8.61499 8.87631 8.95284 10.20165 Molecular weight = 359.15amu Principal moments of inertia in cm(-1) A = 0.015667 B = 0.002355 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.748057 B =11886.258809 C =13090.769465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C -0.142 4.142 4 C 0.115 3.885 5 N -0.614 5.614 6 C 0.067 3.933 7 C 0.430 3.570 8 F -0.181 7.181 9 F -0.178 7.178 10 F -0.174 7.174 11 C 0.523 3.477 12 O -0.489 6.489 13 C 0.039 3.961 14 O -0.301 6.301 15 C -0.014 4.014 16 C -0.166 4.166 17 C -0.198 4.198 18 C 0.090 3.910 19 C -0.462 4.462 20 H 0.077 0.923 21 C 0.075 3.925 22 N -0.796 5.796 23 Si 0.908 3.092 24 H -0.268 1.268 25 H -0.278 1.278 26 H -0.263 1.263 27 C -0.133 4.133 28 C -0.113 4.113 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.281 0.719 45 H 0.127 0.873 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.485 -9.679 -9.272 22.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.131 4.131 3 C -0.200 4.200 4 C -0.006 4.006 5 N -0.350 5.350 6 C -0.060 4.060 7 C 0.374 3.626 8 F -0.162 7.162 9 F -0.160 7.160 10 F -0.155 7.155 11 C 0.311 3.689 12 O -0.360 6.360 13 C -0.041 4.041 14 O -0.216 6.216 15 C -0.057 4.057 16 C -0.185 4.185 17 C -0.218 4.218 18 C 0.087 3.913 19 C -0.492 4.492 20 H 0.095 0.905 21 C -0.143 4.143 22 N -0.422 5.422 23 Si 0.733 3.267 24 H -0.193 1.193 25 H -0.204 1.204 26 H -0.187 1.187 27 C -0.153 4.153 28 C -0.132 4.132 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.097 0.903 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.114 0.886 44 H 0.092 0.908 45 H 0.144 0.856 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -18.844 -8.848 -8.614 22.530 hybrid contribution 1.012 -0.442 0.035 1.105 sum -17.832 -9.290 -8.579 21.861 Atomic orbital electron populations 1.21771 0.94340 1.01769 1.02365 1.21525 0.96122 0.97565 0.97883 1.21837 1.01472 0.94919 1.01728 1.21790 0.77467 1.01621 0.99737 1.47772 1.07278 1.19762 1.60183 1.22811 1.04418 0.85420 0.93359 1.21411 0.74286 0.83479 0.83438 1.93182 1.43389 1.92448 1.87216 1.93217 1.84103 1.55542 1.83134 1.93202 1.72091 1.87161 1.63087 1.20536 0.89077 0.81995 0.77327 1.90741 1.74563 1.29826 1.40877 1.22414 0.89607 0.92478 0.99559 1.85924 1.19651 1.39567 1.76481 1.18612 0.79376 0.99106 1.08573 1.20352 0.95267 0.97759 1.05103 1.20548 0.92699 0.99095 1.09447 1.17609 0.93587 0.89794 0.90276 1.19480 0.91544 1.26097 1.12100 0.90466 1.25895 1.00563 0.93971 0.93839 1.69829 1.38715 1.28213 1.05474 0.86314 0.81955 0.79946 0.78500 1.19301 1.20374 1.18697 1.20992 0.90995 0.99837 1.03460 1.19834 0.94599 0.96403 1.02386 0.92298 0.92259 0.92602 0.91124 0.91950 0.92661 0.93195 0.89852 0.88946 0.85184 0.85437 0.90277 0.89007 0.89027 0.88610 0.90837 0.85566 0.88271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.19 37.16 0.34 -0.55 16 2 C -0.11 -0.85 3.13 -90.62 -0.28 -1.13 16 3 C -0.14 -1.46 7.94 37.16 0.30 -1.17 16 4 C 0.12 0.98 4.79 -4.04 -0.02 0.96 16 5 N -0.61 -6.08 2.28 -173.69 -0.40 -6.48 16 6 C 0.07 0.45 5.33 -4.04 -0.02 0.43 16 7 C 0.43 3.90 3.29 37.16 0.12 4.02 16 8 F -0.18 -1.72 16.22 2.25 0.04 -1.68 16 9 F -0.18 -1.61 17.32 2.25 0.04 -1.57 16 10 F -0.17 -2.12 14.30 2.25 0.03 -2.09 16 11 C 0.52 7.50 6.00 -10.98 -0.07 7.44 16 12 O -0.49 -8.76 14.29 -14.35 -0.21 -8.96 16 13 C 0.04 0.61 3.70 36.01 0.13 0.74 16 14 O -0.30 -6.39 9.65 -38.64 -0.37 -6.76 16 15 C -0.01 -0.32 6.71 -38.78 -0.26 -0.58 16 16 C -0.17 -3.64 8.96 -39.83 -0.36 -3.99 16 17 C -0.20 -4.76 9.74 -39.25 -0.38 -5.14 16 18 C 0.09 2.37 5.57 -106.80 -0.60 1.77 16 19 C -0.46 -12.13 9.04 -37.83 -0.34 -12.47 16 20 H 0.08 1.94 7.91 -52.49 -0.41 1.53 16 21 C 0.07 1.86 5.13 -17.34 -0.09 1.77 16 22 N -0.80 -20.59 10.96 55.55 0.61 -19.98 16 23 Si 0.91 18.58 29.60 -169.99 -5.03 13.55 16 24 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 25 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 26 H -0.26 -5.31 7.11 56.52 0.40 -4.90 16 27 C -0.13 -3.48 8.64 -39.25 -0.34 -3.82 16 28 C -0.11 -2.78 9.92 -39.83 -0.40 -3.17 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.73 8.00 -51.93 -0.42 0.32 16 34 H 0.05 0.69 6.06 -51.93 -0.31 0.37 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.54 7.25 -51.93 -0.38 0.17 16 37 H 0.09 0.96 7.42 -51.93 -0.39 0.58 16 38 H 0.13 0.44 8.07 -51.92 -0.42 0.02 16 39 H 0.13 0.72 6.44 -51.93 -0.33 0.38 16 40 H 0.08 1.04 6.90 -51.93 -0.36 0.68 16 41 H 0.09 1.38 5.00 -51.93 -0.26 1.12 16 42 H 0.09 1.66 6.27 -52.49 -0.33 1.33 16 43 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 44 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 45 H 0.13 3.37 6.16 -52.49 -0.32 3.05 16 46 H 0.10 2.29 8.06 -52.49 -0.42 1.86 16 LS Contribution 383.64 15.07 5.78 5.78 Total: -1.00 -31.21 383.64 -7.79 -39.00 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -6.02 Total: 4.09 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -2.26 Total: -14.90 kcal Atomic # 7 Polarization: -26.67 SS G_CDS: 0.21 Total: -26.46 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.58 Total: -15.73 kcal Atomic # 9 Polarization: -5.45 SS G_CDS: 0.11 Total: -5.34 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.21 -7.79 -39.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065622190.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.803 kcal (2) G-P(sol) polarization free energy of solvation -31.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds