Wall clock time and date at job start Tue Mar 31 2020 05:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46897 * 109.47560 * 2 1 4 4 C 1.46899 * 110.99784 * 287.63697 * 3 2 1 5 5 C 1.50693 * 109.47226 * 300.60953 * 4 3 2 6 6 O 1.21282 * 119.99836 * 357.06874 * 5 4 3 7 7 N 1.34779 * 120.00326 * 177.06593 * 5 4 3 8 8 C 1.46497 * 120.00186 * 180.02562 * 7 5 4 9 9 C 1.50700 * 109.47279 * 179.97438 * 8 7 5 10 10 H 1.08000 * 119.99859 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00143 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00015 * 179.97438 * 11 9 8 13 13 Si 1.86796 * 120.00076 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.47084 * 89.99502 * 13 11 9 15 15 H 1.48496 * 109.47001 * 209.99335 * 13 11 9 16 16 H 1.48495 * 109.47260 * 329.99598 * 13 11 9 17 17 C 1.46892 * 111.00375 * 163.68178 * 3 2 1 18 18 H 1.09003 * 110.90874 * 61.54136 * 17 3 2 19 19 C 1.55144 * 110.99163 * 185.41028 * 17 3 2 20 20 C 1.54313 * 103.17671 * 153.82959 * 19 17 3 21 21 N 1.47444 * 107.23721 * 337.62994 * 20 19 17 22 22 C 1.46897 * 110.99935 * 236.74314 * 21 20 19 23 23 H 1.09002 * 109.47160 * 60.12515 * 22 21 20 24 24 C 1.53003 * 109.47275 * 180.12200 * 22 21 20 25 25 C 1.50702 * 109.47350 * 300.12158 * 22 21 20 26 26 C 1.38234 * 119.99429 * 319.72978 * 25 22 21 27 27 C 1.38243 * 119.99490 * 179.76330 * 26 25 22 28 28 C 1.38233 * 120.00054 * 0.50846 * 27 26 25 29 29 C 1.38233 * 119.99625 * 359.74447 * 28 27 26 30 30 C 1.38228 * 120.00620 * 0.02562 * 29 28 27 31 31 C 1.47847 * 108.56493 * 359.00828 * 21 20 19 32 32 H 1.08995 * 109.47206 * 180.11815 * 1 2 3 33 33 H 1.08991 * 109.47253 * 300.12346 * 1 2 3 34 34 H 1.09004 * 109.46768 * 60.12576 * 1 2 3 35 35 H 1.09001 * 109.47103 * 239.99716 * 2 1 3 36 36 H 1.09002 * 109.46858 * 120.00197 * 2 1 3 37 37 H 1.08999 * 109.47229 * 60.61045 * 4 3 2 38 38 H 1.09001 * 109.47197 * 180.60886 * 4 3 2 39 39 H 0.97001 * 119.99731 * 359.97438 * 7 5 4 40 40 H 1.09001 * 109.46894 * 299.99989 * 8 7 5 41 41 H 1.09003 * 109.47566 * 59.99835 * 8 7 5 42 42 H 0.96996 * 120.00101 * 180.02562 * 12 11 9 43 43 H 1.09003 * 110.70386 * 35.36250 * 19 17 3 44 44 H 1.09001 * 110.70532 * 272.29790 * 19 17 3 45 45 H 1.09009 * 109.88963 * 97.03509 * 20 19 17 46 46 H 1.08996 * 109.89387 * 218.05541 * 20 19 17 47 47 H 1.08999 * 109.47124 * 59.99703 * 24 22 21 48 48 H 1.08994 * 109.47572 * 179.97438 * 24 22 21 49 49 H 1.09002 * 109.47054 * 300.00459 * 24 22 21 50 50 H 1.07995 * 120.00718 * 359.97438 * 26 25 22 51 51 H 1.08000 * 119.99776 * 180.22468 * 27 26 25 52 52 H 1.07997 * 120.00242 * 179.71894 * 28 27 26 53 53 H 1.08002 * 119.99752 * 179.97438 * 29 28 27 54 54 H 1.07995 * 120.00436 * 179.97438 * 30 29 28 55 55 H 1.09001 * 110.37699 * 142.92461 * 31 21 20 56 56 H 1.08994 * 110.37395 * 265.27091 * 31 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.8035 2.0197 -1.3070 5 6 2.5290 1.2377 -2.3714 6 8 3.2069 0.2801 -2.0643 7 7 2.4244 1.6024 -3.6647 8 6 3.1292 0.8419 -4.6996 9 6 2.8485 1.4505 -6.0493 10 1 2.2093 2.3174 -6.1283 11 6 3.4084 0.9012 -7.1832 12 7 3.1629 1.4321 -8.3611 13 14 4.5145 -0.5978 -7.0465 14 1 3.6935 -1.8304 -7.1557 15 1 5.5186 -0.5734 -8.1403 16 1 5.2107 -0.5814 -5.7350 17 6 3.4361 1.4425 0.3853 18 1 4.0547 0.8912 -0.3229 19 6 3.9170 2.9117 0.5169 20 6 5.0843 2.8111 1.5212 21 7 4.8886 1.5719 2.2959 22 6 4.8298 1.8552 3.7361 23 1 3.9970 2.5281 3.9403 24 6 4.6296 0.5479 4.5053 25 6 6.1181 2.5032 4.1736 26 6 7.3239 2.0548 3.6676 27 6 8.5053 2.6525 4.0653 28 6 8.4817 3.6914 4.9769 29 6 7.2763 4.1361 5.4868 30 6 6.0946 3.5418 5.0856 31 6 3.6456 0.9188 1.8332 32 1 -0.3633 -1.0276 0.0021 33 1 -0.3633 0.5157 0.8888 34 1 -0.3633 0.5119 -0.8912 35 1 1.8934 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 0.7370 2.0356 -1.5312 38 1 2.1849 3.0406 -1.2826 39 1 1.8819 2.3681 -3.9104 40 1 4.2012 0.8694 -4.5040 41 1 2.7845 -0.1922 -4.6889 42 1 3.5566 1.0455 -9.1589 43 1 3.1217 3.5435 0.9125 44 1 4.2665 3.2903 -0.4436 45 1 6.0323 2.7672 0.9847 46 1 5.0754 3.6733 2.1878 47 1 5.4624 -0.1251 4.3010 48 1 4.5864 0.7579 5.5739 49 1 3.6978 0.0791 4.1888 50 1 7.3427 1.2400 2.9591 51 1 9.4471 2.3046 3.6672 52 1 9.4050 4.1552 5.2910 53 1 7.2579 4.9475 6.1993 54 1 5.1529 3.8890 5.4843 55 1 3.7643 -0.1647 1.8308 56 1 2.8067 1.2082 2.4660 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068957312.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:07 Heat of formation + Delta-G solvation = -15.215586 kcal Electronic energy + Delta-G solvation = -32889.660546 eV Core-core repulsion = 28797.760923 eV Total energy + Delta-G solvation = -4091.899623 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 359.231 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.53925 -40.69826 -39.34958 -37.49603 -36.04339 -34.63826 -34.44792 -31.98037 -31.71517 -30.96198 -30.72844 -29.34793 -29.00209 -26.82769 -24.57393 -24.22454 -23.47464 -22.91330 -22.23081 -21.72622 -21.02141 -20.76406 -19.08551 -17.88826 -17.75802 -17.51182 -17.21590 -16.94959 -16.54590 -16.27917 -16.05079 -15.81758 -15.50495 -15.32471 -14.89632 -14.80083 -14.55501 -14.51711 -14.38366 -14.21263 -14.06792 -13.99516 -13.53825 -13.36346 -13.28205 -13.12233 -12.97253 -12.83348 -12.75337 -12.62118 -12.42413 -12.33906 -12.12275 -11.97812 -11.83584 -11.75693 -11.68918 -11.63828 -11.60872 -11.45222 -11.37634 -10.94413 -9.90493 -9.76370 -9.58668 -9.29082 -9.19000 -8.42980 -6.49774 0.47486 0.56361 1.28419 1.31182 1.43113 1.67511 2.24220 2.49171 2.62607 2.92155 2.93537 3.14774 3.53131 3.69075 3.85285 3.94835 4.04015 4.08123 4.19750 4.21926 4.32589 4.35442 4.35850 4.39249 4.40076 4.48210 4.52576 4.63507 4.66171 4.67576 4.72866 4.74636 4.78998 4.84657 4.86683 4.93000 4.95906 4.99044 5.06332 5.07718 5.12406 5.17725 5.22686 5.23529 5.24802 5.30529 5.40798 5.54864 5.60068 5.68201 5.70736 5.89784 5.93773 6.06485 6.09397 6.15721 6.22371 6.51601 6.82189 7.12921 7.39063 8.71623 Molecular weight = 359.23amu Principal moments of inertia in cm(-1) A = 0.012045 B = 0.002193 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.081949 B =12766.832955 C =14101.572210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.030 3.970 3 N -0.490 5.490 4 C 0.039 3.961 5 C 0.469 3.531 6 O -0.585 6.585 7 N -0.705 5.705 8 C 0.235 3.765 9 C -0.546 4.546 10 H 0.060 0.940 11 C 0.027 3.973 12 N -0.929 5.929 13 Si 0.937 3.063 14 H -0.265 1.265 15 H -0.273 1.273 16 H -0.264 1.264 17 C 0.060 3.940 18 H 0.050 0.950 19 C -0.129 4.129 20 C 0.056 3.944 21 N -0.529 5.529 22 C 0.120 3.880 23 H 0.055 0.945 24 C -0.137 4.137 25 C -0.085 4.085 26 C -0.106 4.106 27 C -0.135 4.135 28 C -0.129 4.129 29 C -0.127 4.127 30 C -0.124 4.124 31 C 0.068 3.932 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.049 0.951 35 H 0.037 0.963 36 H 0.076 0.924 37 H 0.127 0.873 38 H 0.122 0.878 39 H 0.408 0.592 40 H 0.007 0.993 41 H 0.007 0.993 42 H 0.272 0.728 43 H 0.088 0.912 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.064 0.936 47 H 0.054 0.946 48 H 0.071 0.929 49 H 0.062 0.938 50 H 0.117 0.883 51 H 0.129 0.871 52 H 0.137 0.863 53 H 0.141 0.859 54 H 0.133 0.867 55 H 0.069 0.931 56 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.891 4.607 31.221 31.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.098 4.098 3 N -0.213 5.213 4 C -0.093 4.093 5 C 0.256 3.744 6 O -0.468 6.468 7 N -0.356 5.356 8 C 0.111 3.889 9 C -0.584 4.584 10 H 0.078 0.922 11 C -0.174 4.174 12 N -0.568 5.568 13 Si 0.761 3.239 14 H -0.190 1.190 15 H -0.198 1.198 16 H -0.189 1.189 17 C -0.049 4.049 18 H 0.068 0.932 19 C -0.168 4.168 20 C -0.072 4.072 21 N -0.254 5.254 22 C 0.012 3.988 23 H 0.073 0.927 24 C -0.194 4.194 25 C -0.086 4.086 26 C -0.124 4.124 27 C -0.153 4.153 28 C -0.147 4.147 29 C -0.145 4.145 30 C -0.142 4.142 31 C -0.059 4.059 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.094 0.906 37 H 0.145 0.855 38 H 0.140 0.860 39 H 0.244 0.756 40 H 0.025 0.975 41 H 0.025 0.975 42 H 0.082 0.918 43 H 0.107 0.893 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.073 0.927 48 H 0.090 0.910 49 H 0.081 0.919 50 H 0.135 0.865 51 H 0.147 0.853 52 H 0.155 0.845 53 H 0.158 0.842 54 H 0.151 0.849 55 H 0.087 0.913 56 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.544 3.844 31.526 31.861 hybrid contribution 0.279 -0.373 -1.549 1.618 sum 2.823 3.470 29.977 30.309 Atomic orbital electron populations 1.21723 0.93549 1.01941 1.02395 1.22372 0.96742 0.88900 1.01789 1.62608 1.16686 1.18060 1.23905 1.22461 1.02411 0.99065 0.85351 1.22734 0.81771 0.85364 0.84546 1.90578 1.43301 1.30817 1.82062 1.46224 1.49929 1.32994 1.06410 1.19011 0.91895 0.91677 0.86363 1.21302 1.31393 1.15312 0.90385 0.92156 1.25592 0.97249 0.99806 0.94752 1.69975 1.45451 1.42475 0.98904 0.85870 0.79495 0.80048 0.78523 1.19032 1.19754 1.18851 1.22968 0.88759 0.96666 0.96477 0.93184 1.22791 0.98398 0.95965 0.99636 1.22596 0.97994 0.91460 0.95148 1.63562 1.35252 1.23241 1.03336 1.20738 0.93816 0.96818 0.87390 0.92703 1.21816 1.02117 0.95696 0.99812 1.19825 0.94565 0.96532 0.97640 1.21090 0.92182 0.99882 0.99255 1.21415 0.98460 0.97142 0.98306 1.21434 0.98938 0.97066 0.97273 1.21385 0.92251 1.00406 1.00422 1.21239 0.99268 0.95970 0.97752 1.22891 0.90734 0.98643 0.93670 0.91920 0.90979 0.93168 0.94447 0.90601 0.85543 0.85984 0.75628 0.97492 0.97484 0.91841 0.89296 0.91922 0.92013 0.91789 0.92664 0.91033 0.91869 0.86528 0.85329 0.84489 0.84150 0.84894 0.91307 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.96 71.98 0.72 -2.05 16 2 C 0.03 0.74 5.25 86.30 0.45 1.20 16 3 N -0.49 -11.74 4.57 -866.49 -3.96 -15.70 16 4 C 0.04 0.95 5.51 85.56 0.47 1.42 16 5 C 0.47 16.56 7.10 87.65 0.62 17.18 16 6 O -0.59 -24.91 11.72 -3.04 -0.04 -24.94 16 7 N -0.71 -27.50 5.55 -466.79 -2.59 -30.09 16 8 C 0.23 11.51 4.50 85.63 0.38 11.89 16 9 C -0.55 -30.14 9.83 25.60 0.25 -29.89 16 10 H 0.06 3.48 7.84 -2.91 -0.02 3.46 16 11 C 0.03 1.50 5.47 84.65 0.46 1.97 16 12 N -0.93 -55.54 13.96 21.45 0.30 -55.24 16 13 Si 0.94 44.55 27.47 68.60 1.88 46.44 16 14 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 15 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 16 H -0.26 -12.57 6.54 99.48 0.65 -11.92 16 17 C 0.06 1.55 2.31 46.47 0.11 1.66 16 18 H 0.05 1.75 5.83 -2.39 -0.01 1.73 16 19 C -0.13 -2.84 5.30 31.77 0.17 -2.67 16 20 C 0.06 1.20 5.99 86.64 0.52 1.72 16 21 N -0.53 -11.15 4.34 -863.74 -3.75 -14.90 16 22 C 0.12 2.09 1.87 44.17 0.08 2.17 16 23 H 0.06 0.90 7.96 -2.39 -0.02 0.88 16 24 C -0.14 -2.14 9.06 71.98 0.65 -1.49 16 25 C -0.09 -1.52 3.72 -19.87 -0.07 -1.59 16 26 C -0.11 -2.06 8.99 22.27 0.20 -1.86 16 27 C -0.14 -2.32 10.05 22.27 0.22 -2.09 16 28 C -0.13 -1.89 10.05 22.27 0.22 -1.67 16 29 C -0.13 -1.76 10.05 22.27 0.22 -1.53 16 30 C -0.12 -1.88 9.67 22.27 0.22 -1.66 16 31 C 0.07 1.49 3.91 86.94 0.34 1.83 16 32 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.05 1.02 6.80 -2.38 -0.02 1.00 16 35 H 0.04 1.24 5.25 -2.39 -0.01 1.23 16 36 H 0.08 1.78 6.52 -2.39 -0.02 1.76 16 37 H 0.13 2.56 6.75 -2.39 -0.02 2.54 16 38 H 0.12 2.53 6.95 -2.39 -0.02 2.52 16 39 H 0.41 13.85 8.32 -92.71 -0.77 13.07 16 40 H 0.01 0.37 7.20 -2.39 -0.02 0.36 16 41 H 0.01 0.37 7.57 -2.39 -0.02 0.35 16 42 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 43 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.06 1.49 7.98 -2.39 -0.02 1.47 16 45 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 46 H 0.06 1.25 7.05 -2.39 -0.02 1.24 16 47 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.06 0.94 7.04 -2.39 -0.02 0.93 16 50 H 0.12 2.53 7.73 -2.91 -0.02 2.51 16 51 H 0.13 1.85 8.06 -2.91 -0.02 1.82 16 52 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 53 H 0.14 1.28 8.06 -2.91 -0.02 1.25 16 54 H 0.13 1.54 8.04 -2.91 -0.02 1.51 16 55 H 0.07 1.61 7.67 -2.39 -0.02 1.60 16 56 H 0.06 1.28 7.58 -2.39 -0.02 1.27 16 Total: -1.00 -67.48 428.33 -1.87 -69.36 By element: Atomic # 1 Polarization: 30.51 SS G_CDS: 0.03 Total: 30.55 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: 6.24 Total: -5.46 kcal Atomic # 7 Polarization: -105.94 SS G_CDS: -10.00 Total: -115.94 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.04 Total: -24.94 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.88 Total: 46.44 kcal Total: -67.48 -1.87 -69.36 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068957312.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.142 kcal (2) G-P(sol) polarization free energy of solvation -67.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds