Wall clock time and date at job start Tue Mar 31 2020 05:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46974 * 2 1 4 4 C 1.50696 * 109.47023 * 240.00111 * 2 1 3 5 5 N 1.31129 * 126.55108 * 106.56735 * 4 2 1 6 6 C 1.34503 * 105.61591 * 179.91348 * 5 4 2 7 7 C 1.50700 * 126.28701 * 180.12349 * 6 5 4 8 8 C 1.53003 * 117.49518 * 188.91166 * 7 6 5 9 9 C 1.53000 * 117.49463 * 120.29187 * 7 6 5 10 10 N 1.29944 * 107.42288 * 0.34625 * 6 5 4 11 11 O 1.21309 * 110.24941 * 359.78211 * 10 6 5 12 12 N 1.46901 * 109.47103 * 119.99987 * 2 1 3 13 13 C 1.46959 * 111.00206 * 174.94696 * 12 2 1 14 14 C 1.53043 * 109.36652 * 183.18897 * 13 12 2 15 15 N 1.46958 * 109.36291 * 301.60046 * 14 13 12 16 16 C 1.46901 * 110.99875 * 183.18872 * 15 14 13 17 17 C 1.53000 * 109.47240 * 169.99524 * 16 15 14 18 18 H 1.09004 * 109.47030 * 55.00433 * 17 16 15 19 19 C 1.47198 * 109.47360 * 295.00111 * 17 16 15 20 20 N 7.05704 * 120.65702 * 76.32619 * 2 1 3 21 21 C 1.53004 * 109.47119 * 175.00018 * 17 16 15 22 22 C 1.50704 * 109.47044 * 185.00160 * 21 17 16 23 23 H 1.08001 * 119.99465 * 359.97438 * 22 21 17 24 24 C 1.37867 * 120.00039 * 179.72387 * 22 21 17 25 25 N 1.31517 * 120.00263 * 0.27505 * 24 22 21 26 26 Si 1.86805 * 120.00190 * 180.27587 * 24 22 21 27 27 H 1.48495 * 109.46891 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47167 * 120.00061 * 26 24 22 29 29 H 1.48495 * 109.46841 * 239.99971 * 26 24 22 30 30 C 1.46946 * 110.88500 * 59.32102 * 15 14 13 31 31 C 1.46957 * 110.99901 * 298.74438 * 12 2 1 32 32 H 1.09004 * 109.47326 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47294 * 300.00077 * 1 2 3 34 34 H 1.08995 * 109.47418 * 60.00129 * 1 2 3 35 35 H 1.08997 * 115.55261 * 334.61571 * 7 6 5 36 36 H 1.09004 * 117.50016 * 359.97438 * 8 7 6 37 37 H 1.08997 * 117.49743 * 145.02406 * 8 7 6 38 38 H 1.09008 * 117.49386 * 214.97726 * 9 7 6 39 39 H 1.08997 * 117.50074 * 359.97151 * 9 7 6 40 40 H 1.09000 * 109.48893 * 63.21602 * 13 12 2 41 41 H 1.09004 * 109.48262 * 303.15860 * 13 12 2 42 42 H 1.08999 * 109.48954 * 181.63018 * 14 13 12 43 43 H 1.09007 * 109.48701 * 61.56258 * 14 13 12 44 44 H 1.09007 * 109.47111 * 49.99609 * 16 15 14 45 45 H 1.09000 * 109.47361 * 289.99522 * 16 15 14 46 46 H 1.08999 * 109.47006 * 65.00147 * 21 17 16 47 47 H 1.08999 * 109.46950 * 304.99972 * 21 17 16 48 48 H 0.96998 * 120.00394 * 180.02562 * 25 24 22 49 49 H 1.09001 * 109.48892 * 60.64450 * 30 15 14 50 50 H 1.09000 * 109.49425 * 180.71349 * 30 15 14 51 51 H 1.08999 * 109.49179 * 296.77871 * 31 12 2 52 52 H 1.09007 * 109.48745 * 56.84735 * 31 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 7 2.5758 -0.1540 -2.2862 6 6 2.8671 -1.1682 -3.1203 7 6 3.5118 -1.0497 -4.4773 8 6 3.5633 -2.3074 -5.3471 9 6 4.8408 -1.7763 -4.6937 10 7 2.4861 -2.2683 -2.5433 11 8 2.0038 -2.0272 -1.4566 12 7 2.0197 -0.6925 1.1994 13 6 3.4837 -0.8177 1.1746 14 6 3.9460 -1.6122 2.3982 15 7 3.4994 -0.9287 3.6201 16 6 3.9891 -1.6212 4.8196 17 6 3.7221 -0.7559 6.0528 18 1 2.6622 -0.5050 6.0981 19 6 4.5158 0.4807 5.9658 20 7 5.1284 1.4351 5.8987 21 6 4.1176 -1.5281 7.3130 22 6 3.7414 -0.7263 8.5323 23 1 3.2680 0.2379 8.4196 24 6 3.9969 -1.2258 9.7917 25 7 4.5737 -2.3997 9.9290 26 14 3.5236 -0.2353 11.3032 27 1 2.8933 1.0412 10.8810 28 1 2.5618 -1.0140 12.1241 29 1 4.7389 0.0538 12.1059 30 6 2.0355 -0.8035 3.6451 31 6 1.5732 -0.0090 2.4213 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8899 35 1 3.3728 -0.0937 -4.9820 36 1 3.1312 -3.2206 -4.9377 37 1 3.4581 -2.1789 -6.4243 38 1 5.5760 -1.2983 -5.3412 39 1 5.2490 -2.3395 -3.8545 40 1 3.9339 0.1748 1.1940 41 1 3.7887 -1.3380 0.2666 42 1 5.0338 -1.6814 2.3971 43 1 3.5174 -2.6139 2.3645 44 1 5.0605 -1.7982 4.7250 45 1 3.4713 -2.5745 4.9256 46 1 5.1936 -1.7017 7.3101 47 1 3.5953 -2.4847 7.3319 48 1 4.7532 -2.7513 10.8150 49 1 1.5853 -1.7960 3.6256 50 1 1.7303 -0.2832 4.5530 51 1 2.0017 0.9927 2.4550 52 1 0.4853 0.0602 2.4225 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069485215.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:37 Heat of formation + Delta-G solvation = 132.904693 kcal Electronic energy + Delta-G solvation = -31848.758519 eV Core-core repulsion = 27659.741530 eV Total energy + Delta-G solvation = -4189.016989 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.206 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -45.90288 -39.82154 -38.12463 -37.45359 -35.89969 -35.34364 -33.75838 -32.82324 -31.83434 -31.07754 -30.46164 -27.52212 -25.78641 -25.61514 -24.96174 -23.52563 -22.91469 -22.84532 -22.33983 -21.65574 -20.42208 -19.84076 -18.40363 -17.97696 -16.86284 -16.69619 -16.28761 -16.23484 -15.95069 -15.13116 -15.07684 -14.97474 -14.78580 -14.59882 -14.34433 -13.99713 -13.31538 -13.15382 -13.03309 -12.79478 -12.69511 -12.54910 -12.50106 -12.43772 -12.19808 -12.07234 -11.95644 -11.91235 -11.59566 -11.40785 -11.37854 -11.24440 -11.21070 -11.11532 -11.06648 -11.05190 -10.86624 -10.65505 -10.50582 -10.13731 -10.01089 -9.55536 -9.22271 -8.81772 -8.47448 -8.24453 -6.10938 -4.14134 0.80185 1.78033 2.45346 2.91811 3.27429 3.30262 3.35899 3.40074 3.40718 3.70782 3.78809 3.81155 3.92109 4.19382 4.29408 4.40111 4.41295 4.47235 4.58984 4.73814 4.84894 4.87464 4.95738 5.08519 5.10584 5.14439 5.18424 5.20607 5.23007 5.27339 5.31246 5.38819 5.39793 5.50484 5.55682 5.57674 5.60906 5.63949 5.66026 5.71007 5.81325 5.86903 5.94936 6.03595 6.32822 6.45313 6.52249 6.58904 7.09740 7.12257 7.41364 7.51310 7.84308 7.87220 8.21598 8.57389 8.90839 9.51560 10.99936 Molecular weight = 359.21amu Principal moments of inertia in cm(-1) A = 0.021873 B = 0.001764 C = 0.001719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.783198 B =15866.677391 C =16282.229322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.174 3.826 3 H 0.090 0.910 4 C 0.198 3.802 5 N -0.479 5.479 6 C 0.199 3.801 7 C -0.080 4.080 8 C -0.158 4.158 9 C -0.156 4.156 10 N -0.385 5.385 11 O 0.095 5.905 12 N -0.531 5.531 13 C 0.057 3.943 14 C 0.061 3.939 15 N -0.544 5.544 16 C 0.064 3.936 17 C 0.011 3.989 18 H 0.100 0.900 19 C 0.256 3.744 20 N -0.480 5.480 21 C 0.031 3.969 22 C -0.525 4.525 23 H 0.057 0.943 24 C 0.062 3.938 25 N -0.891 5.891 26 Si 0.891 3.109 27 H -0.272 1.272 28 H -0.283 1.283 29 H -0.284 1.284 30 C 0.052 3.948 31 C 0.057 3.943 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.135 0.865 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.098 0.902 40 H 0.049 0.951 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.047 0.953 44 H 0.079 0.921 45 H 0.056 0.944 46 H 0.026 0.974 47 H 0.038 0.962 48 H 0.262 0.738 49 H 0.049 0.951 50 H 0.091 0.909 51 H 0.049 0.951 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.714 -0.242 -28.561 29.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.063 3.937 3 H 0.108 0.892 4 C -0.023 4.023 5 N -0.213 5.213 6 C -0.074 4.074 7 C -0.100 4.100 8 C -0.196 4.196 9 C -0.194 4.194 10 N -0.091 5.091 11 O 0.036 5.964 12 N -0.258 5.258 13 C -0.071 4.071 14 C -0.067 4.067 15 N -0.269 5.269 16 C -0.065 4.065 17 C -0.011 4.011 18 H 0.118 0.882 19 C -0.061 4.061 20 N -0.157 5.157 21 C -0.008 4.008 22 C -0.563 4.563 23 H 0.075 0.925 24 C -0.140 4.140 25 N -0.530 5.530 26 Si 0.719 3.281 27 H -0.197 1.197 28 H -0.209 1.209 29 H -0.210 1.210 30 C -0.076 4.076 31 C -0.070 4.070 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.153 0.847 36 H 0.122 0.878 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.117 0.883 40 H 0.067 0.933 41 H 0.085 0.915 42 H 0.099 0.901 43 H 0.065 0.935 44 H 0.098 0.902 45 H 0.074 0.926 46 H 0.044 0.956 47 H 0.056 0.944 48 H 0.071 0.929 49 H 0.067 0.933 50 H 0.109 0.891 51 H 0.068 0.932 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.496 0.624 -29.155 29.877 hybrid contribution -0.412 0.180 1.113 1.200 sum -6.908 0.804 -28.043 28.892 Atomic orbital electron populations 1.21955 0.90984 1.04238 1.03459 1.20130 0.96852 0.94382 0.82294 0.89245 1.28550 0.95049 0.81465 0.97237 1.71849 1.16935 1.30588 1.01934 1.24760 1.00261 0.83803 0.98527 1.20068 1.01462 0.99502 0.88970 1.23086 1.00976 0.96550 0.98987 1.23091 0.90443 1.02429 1.03484 1.74612 1.15429 1.23817 0.95263 1.85370 1.57464 1.26797 1.26745 1.62289 1.11742 1.50817 1.00974 1.22194 0.86465 1.00179 0.98217 1.22064 1.00285 0.95770 0.88577 1.62198 1.10778 1.51771 1.02108 1.22223 1.01169 0.95296 0.87795 1.19252 0.97768 0.87008 0.97111 0.88210 1.28859 0.92982 0.93854 0.90378 1.80986 1.10856 1.12451 1.11417 1.19181 0.97956 0.95259 0.88385 1.21167 1.40296 1.04172 0.90699 0.92455 1.24953 0.94928 0.94952 0.99153 1.69946 1.42195 1.17585 1.23253 0.86542 0.78294 0.80312 0.82969 1.19677 1.20869 1.20983 1.22244 0.87775 0.99972 0.97597 1.22305 1.00603 0.96311 0.87806 0.90523 0.89915 0.91313 0.84705 0.87771 0.87393 0.87275 0.88337 0.93252 0.91522 0.90137 0.93518 0.90205 0.92559 0.95588 0.94413 0.92851 0.93256 0.89085 0.93231 0.89278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 8.98 37.16 0.33 -0.58 16 2 C 0.17 1.44 2.62 -68.87 -0.18 1.26 16 3 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 4 C 0.20 2.03 5.59 -13.06 -0.07 1.96 16 5 N -0.48 -5.44 11.55 -9.87 -0.11 -5.55 16 6 C 0.20 2.16 7.74 -156.37 -1.21 0.95 16 7 C -0.08 -0.63 6.33 -91.77 -0.58 -1.22 16 8 C -0.16 -0.99 10.14 -26.73 -0.27 -1.26 16 9 C -0.16 -1.00 10.23 -26.73 -0.27 -1.28 16 10 N -0.38 -4.53 11.77 30.91 0.36 -4.16 16 11 O 0.10 1.09 11.13 18.11 0.20 1.30 16 12 N -0.53 -4.94 4.57 -227.87 -1.04 -5.98 16 13 C 0.06 0.60 5.33 -3.77 -0.02 0.58 16 14 C 0.06 0.69 5.61 -3.77 -0.02 0.67 16 15 N -0.54 -6.88 4.41 -234.47 -1.03 -7.91 16 16 C 0.06 0.91 4.32 -3.82 -0.02 0.89 16 17 C 0.01 0.19 2.14 -93.41 -0.20 -0.01 16 18 H 0.10 1.63 6.28 -51.93 -0.33 1.31 16 19 C 0.26 5.22 13.67 -20.76 -0.28 4.94 16 20 N -0.48 -10.71 18.54 42.15 0.78 -9.93 16 21 C 0.03 0.70 4.42 -27.88 -0.12 0.57 16 22 C -0.53 -13.73 8.60 -34.44 -0.30 -14.03 16 23 H 0.06 1.50 7.59 -52.49 -0.40 1.10 16 24 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 25 N -0.89 -25.23 13.29 55.43 0.74 -24.50 16 26 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 27 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 28 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 29 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 30 C 0.05 0.56 5.41 -3.77 -0.02 0.54 16 31 C 0.06 0.51 5.34 -3.76 -0.02 0.49 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.40 6.36 -51.93 -0.33 0.07 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.14 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.10 0.77 7.91 -51.93 -0.41 0.36 16 37 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.11 0.49 8.14 -51.92 -0.42 0.07 16 39 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.72 6.69 -51.93 -0.35 0.38 16 42 H 0.08 0.89 8.07 -51.93 -0.42 0.47 16 43 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.08 1.16 8.02 -51.92 -0.42 0.74 16 45 H 0.06 0.75 8.12 -51.93 -0.42 0.33 16 46 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 49 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 50 H 0.09 1.01 6.25 -51.93 -0.32 0.68 16 51 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 52 H 0.09 0.61 6.18 -51.92 -0.32 0.29 16 LS Contribution 423.67 15.07 6.38 6.38 Total: -1.00 -31.56 423.67 -10.44 -42.00 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -8.35 Total: -3.76 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -3.35 Total: -3.92 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: -0.31 Total: -58.04 kcal Atomic # 8 Polarization: 1.09 SS G_CDS: 0.20 Total: 1.30 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -31.56 -10.44 -42.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069485215.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.908 kcal (2) G-P(sol) polarization free energy of solvation -31.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds