Wall clock time and date at job start Tue Mar 31 2020 05:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46974 * 2 1 4 4 C 1.50696 * 109.47023 * 240.00111 * 2 1 3 5 5 N 1.31129 * 126.55108 * 106.56735 * 4 2 1 6 6 C 1.34503 * 105.61591 * 179.91348 * 5 4 2 7 7 C 1.50700 * 126.28701 * 180.12349 * 6 5 4 8 8 C 1.53003 * 117.49518 * 188.91166 * 7 6 5 9 9 C 1.53000 * 117.49463 * 120.29187 * 7 6 5 10 10 N 1.29944 * 107.42288 * 0.34625 * 6 5 4 11 11 O 1.21309 * 110.24941 * 359.78211 * 10 6 5 12 12 N 1.46901 * 109.47103 * 119.99987 * 2 1 3 13 13 C 1.46959 * 111.00206 * 174.94696 * 12 2 1 14 14 C 1.53043 * 109.36652 * 183.18897 * 13 12 2 15 15 N 1.46958 * 109.36291 * 301.60046 * 14 13 12 16 16 C 1.46901 * 110.99875 * 183.18872 * 15 14 13 17 17 C 1.53000 * 109.47240 * 169.99524 * 16 15 14 18 18 H 1.09004 * 109.47030 * 55.00433 * 17 16 15 19 19 C 1.47198 * 109.47360 * 295.00111 * 17 16 15 20 20 N 7.05704 * 120.65702 * 76.32619 * 2 1 3 21 21 C 1.53004 * 109.47119 * 175.00018 * 17 16 15 22 22 C 1.50704 * 109.47044 * 185.00160 * 21 17 16 23 23 H 1.08001 * 119.99465 * 359.97438 * 22 21 17 24 24 C 1.37867 * 120.00039 * 179.72387 * 22 21 17 25 25 N 1.31517 * 120.00263 * 0.27505 * 24 22 21 26 26 Si 1.86805 * 120.00190 * 180.27587 * 24 22 21 27 27 H 1.48495 * 109.46891 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.47167 * 120.00061 * 26 24 22 29 29 H 1.48495 * 109.46841 * 239.99971 * 26 24 22 30 30 C 1.46946 * 110.88500 * 59.32102 * 15 14 13 31 31 C 1.46957 * 110.99901 * 298.74438 * 12 2 1 32 32 H 1.09004 * 109.47326 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47294 * 300.00077 * 1 2 3 34 34 H 1.08995 * 109.47418 * 60.00129 * 1 2 3 35 35 H 1.08997 * 115.55261 * 334.61571 * 7 6 5 36 36 H 1.09004 * 117.50016 * 359.97438 * 8 7 6 37 37 H 1.08997 * 117.49743 * 145.02406 * 8 7 6 38 38 H 1.09008 * 117.49386 * 214.97726 * 9 7 6 39 39 H 1.08997 * 117.50074 * 359.97151 * 9 7 6 40 40 H 1.09000 * 109.48893 * 63.21602 * 13 12 2 41 41 H 1.09004 * 109.48262 * 303.15860 * 13 12 2 42 42 H 1.08999 * 109.48954 * 181.63018 * 14 13 12 43 43 H 1.09007 * 109.48701 * 61.56258 * 14 13 12 44 44 H 1.09007 * 109.47111 * 49.99609 * 16 15 14 45 45 H 1.09000 * 109.47361 * 289.99522 * 16 15 14 46 46 H 1.08999 * 109.47006 * 65.00147 * 21 17 16 47 47 H 1.08999 * 109.46950 * 304.99972 * 21 17 16 48 48 H 0.96998 * 120.00394 * 180.02562 * 25 24 22 49 49 H 1.09001 * 109.48892 * 60.64450 * 30 15 14 50 50 H 1.09000 * 109.49425 * 180.71349 * 30 15 14 51 51 H 1.08999 * 109.49179 * 296.77871 * 31 12 2 52 52 H 1.09007 * 109.48745 * 56.84735 * 31 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 7 2.5758 -0.1540 -2.2862 6 6 2.8671 -1.1682 -3.1203 7 6 3.5118 -1.0497 -4.4773 8 6 3.5633 -2.3074 -5.3471 9 6 4.8408 -1.7763 -4.6937 10 7 2.4861 -2.2683 -2.5433 11 8 2.0038 -2.0272 -1.4566 12 7 2.0197 -0.6925 1.1994 13 6 3.4837 -0.8177 1.1746 14 6 3.9460 -1.6122 2.3982 15 7 3.4994 -0.9287 3.6201 16 6 3.9891 -1.6212 4.8196 17 6 3.7221 -0.7559 6.0528 18 1 2.6622 -0.5050 6.0981 19 6 4.5158 0.4807 5.9658 20 7 5.1284 1.4351 5.8987 21 6 4.1176 -1.5281 7.3130 22 6 3.7414 -0.7263 8.5323 23 1 3.2680 0.2379 8.4196 24 6 3.9969 -1.2258 9.7917 25 7 4.5737 -2.3997 9.9290 26 14 3.5236 -0.2353 11.3032 27 1 2.8933 1.0412 10.8810 28 1 2.5618 -1.0140 12.1241 29 1 4.7389 0.0538 12.1059 30 6 2.0355 -0.8035 3.6451 31 6 1.5732 -0.0090 2.4213 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8899 35 1 3.3728 -0.0937 -4.9820 36 1 3.1312 -3.2206 -4.9377 37 1 3.4581 -2.1789 -6.4243 38 1 5.5760 -1.2983 -5.3412 39 1 5.2490 -2.3395 -3.8545 40 1 3.9339 0.1748 1.1940 41 1 3.7887 -1.3380 0.2666 42 1 5.0338 -1.6814 2.3971 43 1 3.5174 -2.6139 2.3645 44 1 5.0605 -1.7982 4.7250 45 1 3.4713 -2.5745 4.9256 46 1 5.1936 -1.7017 7.3101 47 1 3.5953 -2.4847 7.3319 48 1 4.7532 -2.7513 10.8150 49 1 1.5853 -1.7960 3.6256 50 1 1.7303 -0.2832 4.5530 51 1 2.0017 0.9927 2.4550 52 1 0.4853 0.0602 2.4225 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069485215.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:36 Heat of formation + Delta-G solvation = 112.171317 kcal Electronic energy + Delta-G solvation = -31849.657586 eV Core-core repulsion = 27659.741530 eV Total energy + Delta-G solvation = -4189.916056 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.206 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -46.71537 -40.68873 -38.73518 -38.62312 -37.08911 -36.26798 -35.47501 -34.08473 -33.01469 -32.09761 -31.28432 -28.89880 -26.89624 -26.42889 -25.87898 -24.36517 -24.14022 -23.39466 -23.29499 -23.13642 -21.18623 -20.64058 -19.23109 -18.74259 -18.52712 -18.16521 -17.36884 -16.98898 -16.64932 -16.57310 -15.97527 -15.88960 -15.74881 -15.59027 -15.43051 -15.05272 -14.55153 -14.33609 -14.17726 -13.90105 -13.74807 -13.61102 -13.52067 -13.33122 -13.19928 -13.12120 -13.02176 -12.84966 -12.62529 -12.55938 -12.53783 -12.51774 -12.36400 -12.26248 -12.22424 -12.09418 -11.93336 -11.66445 -11.57804 -11.56234 -11.31169 -11.04891 -10.73538 -10.53896 -9.58842 -9.22011 -8.17747 -6.25728 0.00476 1.00634 1.40471 1.43900 1.53903 1.70096 2.08858 2.16300 2.21206 2.42891 2.68329 2.75382 2.89980 3.08001 3.18038 3.37089 3.56287 3.74014 3.78488 3.85960 3.91044 3.99488 4.09868 4.16802 4.22744 4.29098 4.38421 4.40683 4.50518 4.52281 4.56636 4.64380 4.71189 4.72285 4.75320 4.79000 4.81012 4.87424 4.90987 4.93234 4.99377 5.00920 5.08721 5.10792 5.13864 5.26399 5.49321 5.63570 5.72895 5.80504 5.81747 6.07033 6.18036 6.23605 6.85654 6.95938 7.06838 7.43004 8.93277 Molecular weight = 359.21amu Principal moments of inertia in cm(-1) A = 0.021873 B = 0.001764 C = 0.001719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.783198 B =15866.677391 C =16282.229322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.175 3.825 3 H 0.093 0.907 4 C 0.203 3.797 5 N -0.499 5.499 6 C 0.195 3.805 7 C -0.100 4.100 8 C -0.148 4.148 9 C -0.150 4.150 10 N -0.404 5.404 11 O 0.082 5.918 12 N -0.531 5.531 13 C 0.066 3.934 14 C 0.065 3.935 15 N -0.554 5.554 16 C 0.074 3.926 17 C 0.023 3.977 18 H 0.121 0.879 19 C 0.267 3.733 20 N -0.515 5.515 21 C 0.037 3.963 22 C -0.535 4.535 23 H 0.055 0.945 24 C 0.011 3.989 25 N -0.924 5.924 26 Si 0.948 3.052 27 H -0.268 1.268 28 H -0.273 1.273 29 H -0.287 1.287 30 C 0.048 3.952 31 C 0.061 3.939 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.074 0.926 35 H 0.148 0.852 36 H 0.089 0.911 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.083 0.917 40 H 0.038 0.962 41 H 0.060 0.940 42 H 0.078 0.922 43 H 0.050 0.950 44 H 0.074 0.926 45 H 0.070 0.930 46 H -0.001 1.001 47 H 0.036 0.964 48 H 0.263 0.737 49 H 0.055 0.945 50 H 0.090 0.910 51 H 0.042 0.958 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.157 0.319 -29.672 31.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.065 3.935 3 H 0.111 0.889 4 C -0.018 4.018 5 N -0.233 5.233 6 C -0.077 4.077 7 C -0.119 4.119 8 C -0.185 4.185 9 C -0.188 4.188 10 N -0.113 5.113 11 O 0.026 5.974 12 N -0.258 5.258 13 C -0.063 4.063 14 C -0.063 4.063 15 N -0.279 5.279 16 C -0.054 4.054 17 C 0.001 3.999 18 H 0.138 0.862 19 C -0.049 4.049 20 N -0.193 5.193 21 C -0.002 4.002 22 C -0.574 4.574 23 H 0.073 0.927 24 C -0.188 4.188 25 N -0.564 5.564 26 Si 0.774 3.226 27 H -0.192 1.192 28 H -0.199 1.199 29 H -0.213 1.213 30 C -0.079 4.079 31 C -0.066 4.066 32 H 0.092 0.908 33 H 0.119 0.881 34 H 0.093 0.907 35 H 0.166 0.834 36 H 0.108 0.892 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.102 0.898 40 H 0.056 0.944 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.068 0.932 44 H 0.092 0.908 45 H 0.089 0.911 46 H 0.018 0.982 47 H 0.054 0.946 48 H 0.072 0.928 49 H 0.073 0.927 50 H 0.108 0.892 51 H 0.060 0.940 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.961 1.190 -30.263 31.315 hybrid contribution 0.052 0.007 1.425 1.426 sum -7.909 1.197 -28.838 29.927 Atomic orbital electron populations 1.21964 0.89000 1.04450 1.04679 1.20304 0.98243 0.93948 0.81012 0.88896 1.28962 0.94125 0.81154 0.97524 1.71862 1.17780 1.31083 1.02573 1.25333 0.99590 0.83436 0.99378 1.20340 1.02575 1.00891 0.88139 1.23150 1.00285 0.95042 1.00051 1.23162 0.90538 1.01854 1.03293 1.74600 1.16575 1.24480 0.95686 1.85335 1.57873 1.27316 1.26873 1.62295 1.10727 1.51229 1.01570 1.22042 0.87426 0.99274 0.97510 1.22037 1.00256 0.95874 0.88156 1.62146 1.12218 1.51792 1.01774 1.22021 1.01229 0.95060 0.87136 1.19194 0.98285 0.85793 0.96617 0.86160 1.29342 0.92353 0.93869 0.89336 1.80986 1.11988 1.13742 1.12586 1.19001 0.96145 0.95397 0.89627 1.21573 1.39497 1.04248 0.92043 0.92651 1.25708 0.95204 0.95896 1.02006 1.70040 1.43511 1.18970 1.23867 0.85648 0.77909 0.79187 0.79852 1.19232 1.19872 1.21347 1.22339 0.86489 1.00611 0.98480 1.22330 1.02129 0.95356 0.86754 0.90783 0.88108 0.90679 0.83393 0.89216 0.84836 0.84940 0.89827 0.94365 0.92129 0.90356 0.93202 0.90785 0.91145 0.98221 0.94614 0.92792 0.92650 0.89178 0.93956 0.86538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 8.98 71.98 0.65 -0.79 16 2 C 0.18 2.65 2.62 44.17 0.12 2.76 16 3 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 4 C 0.20 4.07 5.59 88.38 0.49 4.56 16 5 N -0.50 -11.17 11.55 -303.18 -3.50 -14.68 16 6 C 0.19 4.21 7.74 138.46 1.07 5.28 16 7 C -0.10 -1.49 6.33 -11.54 -0.07 -1.56 16 8 C -0.15 -1.66 10.14 30.60 0.31 -1.35 16 9 C -0.15 -1.76 10.23 30.60 0.31 -1.45 16 10 N -0.40 -9.58 11.77 -60.29 -0.71 -10.29 16 11 O 0.08 1.88 11.13 74.85 0.83 2.71 16 12 N -0.53 -9.06 4.57 -874.86 -4.00 -13.06 16 13 C 0.07 1.34 5.33 86.31 0.46 1.80 16 14 C 0.06 1.39 5.61 86.31 0.48 1.88 16 15 N -0.55 -13.28 4.41 -895.72 -3.95 -17.23 16 16 C 0.07 2.03 4.32 86.30 0.37 2.41 16 17 C 0.02 0.79 2.14 -12.60 -0.03 0.76 16 18 H 0.12 3.70 6.28 -2.38 -0.01 3.69 16 19 C 0.27 10.74 13.67 89.44 1.22 11.97 16 20 N -0.52 -22.89 18.54 20.01 0.37 -22.52 16 21 C 0.04 1.67 4.42 29.85 0.13 1.80 16 22 C -0.54 -27.81 8.60 25.60 0.22 -27.59 16 23 H 0.06 2.84 7.59 -2.91 -0.02 2.82 16 24 C 0.01 0.58 5.46 84.65 0.46 1.04 16 25 N -0.92 -52.57 13.29 21.44 0.28 -52.28 16 26 Si 0.95 42.92 29.54 68.60 2.03 44.95 16 27 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 28 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 29 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 30 C 0.05 0.95 5.41 86.31 0.47 1.41 16 31 C 0.06 0.96 5.34 86.31 0.46 1.42 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.10 0.66 6.36 -2.39 -0.02 0.64 16 34 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.15 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.09 1.29 7.91 -2.38 -0.02 1.27 16 37 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.13 0.91 8.14 -2.38 -0.02 0.89 16 39 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.06 1.31 6.69 -2.38 -0.02 1.30 16 42 H 0.08 1.70 8.07 -2.39 -0.02 1.68 16 43 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 44 H 0.07 2.11 8.02 -2.38 -0.02 2.10 16 45 H 0.07 1.75 8.12 -2.39 -0.02 1.73 16 46 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 47 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 48 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 49 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 50 H 0.09 1.78 6.25 -2.39 -0.01 1.76 16 51 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 52 H 0.12 1.21 6.18 -2.38 -0.01 1.19 16 Total: -1.00 -67.91 423.67 -0.59 -68.50 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 0.92 Total: 9.54 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 7.13 Total: 4.35 kcal Atomic # 7 Polarization: -118.55 SS G_CDS: -11.50 Total: -130.05 kcal Atomic # 8 Polarization: 1.88 SS G_CDS: 0.83 Total: 2.71 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -67.91 -0.59 -68.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069485215.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.668 kcal (2) G-P(sol) polarization free energy of solvation -67.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds