Wall clock time and date at job start Tue Mar 31 2020 05:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.46810 * 2 1 4 4 C 1.50691 * 109.46974 * 119.99894 * 2 1 3 5 5 N 1.31131 * 126.55498 * 253.85274 * 4 2 1 6 6 C 1.34499 * 105.61573 * 180.02562 * 5 4 2 7 7 C 1.50700 * 126.28414 * 179.97438 * 6 5 4 8 8 C 1.53005 * 117.49770 * 188.62422 * 7 6 5 9 9 C 1.52993 * 117.50067 * 119.99990 * 7 6 5 10 10 N 1.29945 * 107.42465 * 0.02562 * 6 5 4 11 11 O 1.21298 * 110.25070 * 359.70301 * 10 6 5 12 12 N 1.46902 * 109.47012 * 240.00087 * 2 1 3 13 13 C 1.46951 * 110.99885 * 178.37041 * 12 2 1 14 14 C 1.53047 * 109.38252 * 176.82119 * 13 12 2 15 15 N 1.46959 * 109.36374 * 58.38994 * 14 13 12 16 16 C 1.46902 * 111.00065 * 176.81221 * 15 14 13 17 17 C 1.53001 * 109.47177 * 176.21535 * 16 15 14 18 18 H 1.08998 * 109.46916 * 305.19630 * 17 16 15 19 19 C 1.47201 * 109.46982 * 65.19307 * 17 16 15 20 20 N 7.01878 * 109.68342 * 282.99033 * 2 1 3 21 21 C 1.53003 * 109.46869 * 185.19380 * 17 16 15 22 22 C 1.50700 * 109.46671 * 175.00141 * 21 17 16 23 23 H 1.08003 * 120.00273 * 359.97438 * 22 21 17 24 24 C 1.37877 * 119.99915 * 179.97438 * 22 21 17 25 25 N 1.31514 * 119.99936 * 179.97438 * 24 22 21 26 26 Si 1.86798 * 119.99896 * 0.02562 * 24 22 21 27 27 H 1.48507 * 109.47448 * 89.99764 * 26 24 22 28 28 H 1.48503 * 109.47413 * 209.99877 * 26 24 22 29 29 H 1.48500 * 109.47198 * 330.00141 * 26 24 22 30 30 C 1.46952 * 110.88133 * 300.67801 * 15 14 13 31 31 C 1.46962 * 111.01618 * 54.55633 * 12 2 1 32 32 H 1.09000 * 109.47493 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47218 * 300.00060 * 1 2 3 34 34 H 1.09007 * 109.47090 * 59.99966 * 1 2 3 35 35 H 1.09000 * 115.54940 * 334.32798 * 7 6 5 36 36 H 1.09002 * 117.49534 * 359.97438 * 8 7 6 37 37 H 1.08993 * 117.49787 * 145.01822 * 8 7 6 38 38 H 1.09003 * 117.50208 * 214.97578 * 9 7 6 39 39 H 1.08999 * 117.49994 * 359.97438 * 9 7 6 40 40 H 1.08997 * 109.49163 * 56.84421 * 13 12 2 41 41 H 1.09001 * 109.49308 * 296.80226 * 13 12 2 42 42 H 1.08998 * 109.48889 * 178.35562 * 14 13 12 43 43 H 1.08997 * 109.48834 * 298.42268 * 14 13 12 44 44 H 1.09004 * 109.47090 * 296.21207 * 16 15 14 45 45 H 1.08997 * 109.47062 * 56.21520 * 16 15 14 46 46 H 1.08999 * 109.46988 * 294.99811 * 21 17 16 47 47 H 1.08994 * 109.47415 * 55.00262 * 21 17 16 48 48 H 0.97005 * 119.99344 * 180.02562 * 25 24 22 49 49 H 1.09007 * 109.49069 * 179.28702 * 30 15 14 50 50 H 1.08992 * 109.49070 * 299.33003 * 30 15 14 51 51 H 1.09005 * 109.46888 * 63.20344 * 31 12 2 52 52 H 1.08994 * 109.51188 * 303.15636 * 31 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2304 5 7 2.5688 -0.1534 2.2894 6 6 2.8620 -1.1678 3.1226 7 6 3.4989 -1.0486 4.4832 8 6 3.9283 -2.3425 5.1780 9 6 2.7064 -1.5722 5.6825 10 7 2.4961 -2.2693 2.5384 11 8 2.0121 -2.0281 1.4527 12 7 2.0197 -0.6925 -1.1995 13 6 3.4881 -0.6784 -1.2531 14 6 3.9596 -1.4756 -2.4715 15 7 3.3853 -0.8883 -3.6901 16 6 3.8753 -1.5805 -4.8895 17 6 3.1855 -1.0050 -6.1281 18 1 2.1045 -1.0620 -6.0012 19 6 3.5855 0.4007 -6.3038 20 7 3.8941 1.4855 -6.4395 21 6 3.5976 -1.8106 -7.3618 22 6 2.8254 -1.3233 -8.5607 23 1 2.1118 -0.5197 -8.4534 24 6 3.0299 -1.9034 -9.7947 25 7 2.3557 -1.4784 -10.8409 26 14 4.2636 -3.2937 -9.9803 27 1 3.5812 -4.5940 -9.7587 28 1 4.8405 -3.2643 -11.3484 29 1 5.3498 -3.1283 -8.9813 30 6 1.9168 -0.9029 -3.6367 31 6 1.4453 -0.1056 -2.4183 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 -0.3633 0.5139 -0.8900 35 1 4.1187 -0.1652 4.6364 36 1 3.7496 -3.2798 4.6511 37 1 4.8307 -2.3104 5.7883 38 1 2.8050 -1.0334 6.6250 39 1 1.7241 -2.0024 5.4876 40 1 3.8896 -1.1297 -0.3458 41 1 3.8393 0.3504 -1.3335 42 1 5.0475 -1.4419 -2.5294 43 1 3.6320 -2.5109 -2.3776 44 1 4.9528 -1.4398 -4.9755 45 1 3.6529 -2.6446 -4.8113 46 1 4.6651 -1.6815 -7.5402 47 1 3.3821 -2.8660 -7.1953 48 1 2.4994 -1.8868 -11.7090 49 1 1.5154 -0.4516 -4.5441 50 1 1.5660 -1.9317 -3.5565 51 1 1.7729 0.9298 -2.5122 52 1 0.3574 -0.1390 -2.3606 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069485217.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:41 Heat of formation + Delta-G solvation = 117.336293 kcal Electronic energy + Delta-G solvation = -31875.661893 eV Core-core repulsion = 27685.969807 eV Total energy + Delta-G solvation = -4189.692086 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.206 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -46.69578 -40.73710 -38.77350 -38.66414 -37.08069 -36.26639 -35.44419 -34.13710 -33.11417 -32.15663 -31.29653 -29.23058 -26.98107 -26.42714 -25.94001 -24.40488 -23.86543 -23.38484 -23.15041 -23.05624 -21.18410 -20.62653 -19.26827 -18.91068 -18.65781 -18.21359 -17.48503 -16.97178 -16.63898 -16.43156 -16.01616 -15.87222 -15.77986 -15.60587 -15.37140 -15.07594 -14.77558 -14.39047 -14.22974 -13.92916 -13.84061 -13.60207 -13.54714 -13.39480 -13.28793 -13.11479 -13.10435 -12.82831 -12.64151 -12.55313 -12.52688 -12.46250 -12.25211 -12.19979 -12.14139 -11.96373 -11.87358 -11.64141 -11.57362 -11.54071 -11.43080 -11.11256 -10.73064 -10.71252 -9.58870 -9.20073 -8.23074 -6.28273 0.01943 1.01690 1.43444 1.46588 1.56322 1.71756 2.05930 2.13294 2.21732 2.42177 2.70326 2.74407 2.89756 3.11094 3.13610 3.32078 3.57395 3.74656 3.79751 3.82877 3.92351 3.93420 4.09532 4.17202 4.23516 4.28557 4.37311 4.41920 4.46841 4.51006 4.53533 4.63901 4.65104 4.72372 4.72718 4.78424 4.80867 4.87105 4.91730 4.94531 4.95918 5.00297 5.05372 5.11658 5.12723 5.23266 5.24705 5.45899 5.64774 5.73387 5.81377 6.09412 6.16595 6.28358 6.79041 6.91544 7.08426 7.36210 8.93581 Molecular weight = 359.21amu Principal moments of inertia in cm(-1) A = 0.021124 B = 0.001805 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.196891 B =15506.290022 C =15986.211291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.176 3.824 3 H 0.093 0.907 4 C 0.205 3.795 5 N -0.499 5.499 6 C 0.195 3.805 7 C -0.101 4.101 8 C -0.151 4.151 9 C -0.145 4.145 10 N -0.405 5.405 11 O 0.084 5.916 12 N -0.533 5.533 13 C 0.063 3.937 14 C 0.065 3.935 15 N -0.555 5.555 16 C 0.071 3.929 17 C 0.021 3.979 18 H 0.120 0.880 19 C 0.263 3.737 20 N -0.513 5.513 21 C -0.003 4.003 22 C -0.529 4.529 23 H 0.031 0.969 24 C 0.004 3.996 25 N -0.953 5.953 26 Si 0.946 3.054 27 H -0.258 1.258 28 H -0.296 1.296 29 H -0.238 1.238 30 C 0.046 3.954 31 C 0.061 3.939 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.146 0.854 36 H 0.089 0.911 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.086 0.914 40 H 0.063 0.937 41 H 0.041 0.959 42 H 0.086 0.914 43 H 0.051 0.949 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.026 0.974 47 H 0.061 0.939 48 H 0.264 0.736 49 H 0.082 0.918 50 H 0.058 0.942 51 H 0.041 0.959 52 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.774 -3.426 34.067 34.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.065 3.935 3 H 0.111 0.889 4 C -0.016 4.016 5 N -0.233 5.233 6 C -0.077 4.077 7 C -0.121 4.121 8 C -0.189 4.189 9 C -0.183 4.183 10 N -0.114 5.114 11 O 0.027 5.973 12 N -0.259 5.259 13 C -0.065 4.065 14 C -0.063 4.063 15 N -0.280 5.280 16 C -0.058 4.058 17 C 0.000 4.000 18 H 0.137 0.863 19 C -0.054 4.054 20 N -0.190 5.190 21 C -0.042 4.042 22 C -0.567 4.567 23 H 0.049 0.951 24 C -0.192 4.192 25 N -0.593 5.593 26 Si 0.769 3.231 27 H -0.182 1.182 28 H -0.223 1.223 29 H -0.161 1.161 30 C -0.082 4.082 31 C -0.066 4.066 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.117 0.883 35 H 0.164 0.836 36 H 0.107 0.893 37 H 0.149 0.851 38 H 0.151 0.849 39 H 0.105 0.895 40 H 0.082 0.918 41 H 0.059 0.941 42 H 0.104 0.896 43 H 0.069 0.931 44 H 0.102 0.898 45 H 0.096 0.904 46 H 0.044 0.956 47 H 0.079 0.921 48 H 0.073 0.927 49 H 0.101 0.899 50 H 0.076 0.924 51 H 0.059 0.941 52 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.093 -2.264 34.300 34.375 hybrid contribution 0.206 -0.486 -1.140 1.256 sum 0.113 -2.751 33.160 33.275 Atomic orbital electron populations 1.22011 0.89275 1.04503 1.04673 1.20231 0.97976 0.93897 0.81377 0.88902 1.28940 0.94129 0.81113 0.97388 1.71860 1.17860 1.31068 1.02545 1.25321 0.99656 0.83389 0.99369 1.20330 1.05268 1.02374 0.84115 1.23147 1.00382 0.93481 1.01877 1.23163 0.96212 1.02303 0.96640 1.74599 1.16761 1.24423 0.95602 1.85330 1.57713 1.27282 1.26953 1.62209 1.07608 1.54509 1.01592 1.22085 0.87142 0.99485 0.97768 1.22065 0.99835 0.96610 0.87785 1.62190 1.08202 1.55428 1.02216 1.22124 1.00073 0.97172 0.86395 1.19180 1.02558 0.81683 0.96629 0.86263 1.29348 0.91450 0.94875 0.89697 1.81008 1.11336 1.14601 1.12063 1.19589 0.96823 0.96961 0.90870 1.21382 1.23056 1.18703 0.93563 0.95056 1.26001 0.97859 0.99984 0.95404 1.70087 1.43970 1.44471 1.00803 0.85729 0.80128 0.79543 0.77721 1.18216 1.22313 1.16128 1.22347 0.87244 1.00511 0.98124 1.22317 1.01088 0.96303 0.86881 0.90647 0.90637 0.88290 0.83608 0.89256 0.85054 0.84852 0.89504 0.91827 0.94083 0.89566 0.93090 0.89779 0.90400 0.95550 0.92057 0.92720 0.89949 0.92370 0.94081 0.86886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 8.77 71.98 0.63 -0.90 16 2 C 0.18 2.62 2.62 44.17 0.12 2.74 16 3 H 0.09 1.36 8.14 -2.39 -0.02 1.35 16 4 C 0.21 3.99 5.85 88.38 0.52 4.51 16 5 N -0.50 -10.86 11.55 -303.20 -3.50 -14.36 16 6 C 0.19 4.08 7.74 138.46 1.07 5.15 16 7 C -0.10 -1.45 6.33 -11.54 -0.07 -1.52 16 8 C -0.15 -1.63 10.14 30.60 0.31 -1.32 16 9 C -0.14 -1.47 10.23 30.59 0.31 -1.16 16 10 N -0.40 -9.33 11.77 -60.32 -0.71 -10.04 16 11 O 0.08 1.86 11.31 74.79 0.85 2.70 16 12 N -0.53 -8.82 4.57 -874.88 -4.00 -12.82 16 13 C 0.06 1.18 5.41 86.31 0.47 1.64 16 14 C 0.06 1.22 5.62 86.31 0.48 1.71 16 15 N -0.55 -12.29 4.52 -895.72 -4.05 -16.34 16 16 C 0.07 1.69 4.49 86.30 0.39 2.07 16 17 C 0.02 0.68 1.80 -12.60 -0.02 0.66 16 18 H 0.12 3.61 5.94 -2.39 -0.01 3.59 16 19 C 0.26 10.36 13.67 89.44 1.22 11.58 16 20 N -0.51 -22.79 18.54 20.01 0.37 -22.42 16 21 C 0.00 -0.13 3.49 29.85 0.10 -0.03 16 22 C -0.53 -27.99 9.15 25.60 0.23 -27.76 16 23 H 0.03 1.87 7.84 -2.91 -0.02 1.85 16 24 C 0.00 0.24 5.47 84.65 0.46 0.70 16 25 N -0.95 -58.30 13.96 21.45 0.30 -58.00 16 26 Si 0.95 41.07 27.47 68.60 1.88 42.95 16 27 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 28 H -0.30 -13.27 7.11 99.48 0.71 -12.56 16 29 H -0.24 -9.28 6.54 99.48 0.65 -8.63 16 30 C 0.05 0.90 5.14 86.31 0.44 1.34 16 31 C 0.06 0.99 5.19 86.31 0.45 1.44 16 32 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.10 0.75 6.26 -2.38 -0.01 0.73 16 35 H 0.15 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.09 1.26 7.91 -2.39 -0.02 1.24 16 37 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.06 1.24 7.03 -2.39 -0.02 1.23 16 41 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.09 1.52 8.14 -2.39 -0.02 1.51 16 43 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.03 1.05 7.20 -2.39 -0.02 1.03 16 47 H 0.06 2.13 7.57 -2.39 -0.02 2.11 16 48 H 0.26 15.18 8.31 -92.70 -0.77 14.41 16 49 H 0.08 1.80 5.89 -2.38 -0.01 1.79 16 50 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 51 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 52 H 0.11 1.33 6.04 -2.39 -0.01 1.31 16 Total: -1.00 -72.69 419.51 -0.87 -73.56 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 0.87 Total: 13.91 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: 7.12 Total: 0.84 kcal Atomic # 7 Polarization: -122.39 SS G_CDS: -11.59 Total: -133.97 kcal Atomic # 8 Polarization: 1.86 SS G_CDS: 0.85 Total: 2.70 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 1.88 Total: 42.95 kcal Total: -72.69 -0.87 -73.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069485217.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.900 kcal (2) G-P(sol) polarization free energy of solvation -72.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds