Wall clock time and date at job start Tue Mar 31 2020 05:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47016 * 2 1 4 4 C 1.50690 * 109.47710 * 239.99904 * 2 1 3 5 5 N 1.31136 * 126.55603 * 101.80356 * 4 2 1 6 6 C 1.34488 * 105.61648 * 180.02562 * 5 4 2 7 7 C 1.50706 * 126.28754 * 179.97438 * 6 5 4 8 8 C 1.52992 * 117.49868 * 188.62382 * 7 6 5 9 9 C 1.52995 * 117.49998 * 119.99926 * 7 6 5 10 10 N 1.29943 * 107.42766 * 0.02562 * 6 5 4 11 11 O 1.21304 * 110.24950 * 359.70009 * 10 6 5 12 12 N 1.46899 * 109.46997 * 119.99534 * 2 1 3 13 13 C 1.46954 * 111.00057 * 182.06563 * 12 2 1 14 14 C 1.53046 * 109.36497 * 183.19132 * 13 12 2 15 15 N 1.46953 * 109.36460 * 301.59357 * 14 13 12 16 16 C 1.46899 * 111.00262 * 183.18992 * 15 14 13 17 17 C 1.53003 * 109.47479 * 75.21340 * 16 15 14 18 18 H 1.09001 * 109.46531 * 305.79537 * 17 16 15 19 19 C 1.47199 * 109.47039 * 65.78857 * 17 16 15 20 20 N 7.09115 * 122.51914 * 76.62187 * 2 1 3 21 21 C 1.52993 * 109.47288 * 185.79496 * 17 16 15 22 22 C 1.50704 * 109.46880 * 175.00214 * 21 17 16 23 23 H 1.08000 * 120.00037 * 359.97438 * 22 21 17 24 24 C 1.37879 * 119.99747 * 179.97438 * 22 21 17 25 25 N 1.31513 * 120.00127 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 119.99868 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47152 * 60.00071 * 26 24 22 28 28 H 1.48498 * 109.47134 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.47187 * 299.99666 * 26 24 22 30 30 C 1.46958 * 110.87949 * 59.32301 * 15 14 13 31 31 C 1.46964 * 110.99930 * 305.85993 * 12 2 1 32 32 H 1.08992 * 109.46848 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47267 * 300.00645 * 1 2 3 34 34 H 1.09004 * 109.46891 * 60.00120 * 1 2 3 35 35 H 1.09000 * 115.54547 * 334.32714 * 7 6 5 36 36 H 1.09002 * 117.50380 * 0.02562 * 8 7 6 37 37 H 1.09006 * 117.50151 * 145.01738 * 8 7 6 38 38 H 1.08993 * 117.49897 * 214.97999 * 9 7 6 39 39 H 1.08994 * 117.49714 * 359.97438 * 9 7 6 40 40 H 1.09003 * 109.49543 * 63.21669 * 13 12 2 41 41 H 1.09007 * 109.48896 * 303.15367 * 13 12 2 42 42 H 1.09005 * 109.49055 * 181.62984 * 14 13 12 43 43 H 1.09006 * 109.49274 * 61.56333 * 14 13 12 44 44 H 1.09003 * 109.47280 * 315.21130 * 16 15 14 45 45 H 1.09005 * 109.47136 * 195.21245 * 16 15 14 46 46 H 1.09001 * 109.47137 * 294.99560 * 21 17 16 47 47 H 1.08997 * 109.47620 * 55.00037 * 21 17 16 48 48 H 0.97003 * 119.99896 * 179.97438 * 25 24 22 49 49 H 1.08992 * 109.48957 * 60.64444 * 30 15 14 50 50 H 1.08997 * 109.48722 * 180.71580 * 30 15 14 51 51 H 1.08995 * 109.48802 * 296.77866 * 31 12 2 52 52 H 1.09004 * 109.48566 * 56.85048 * 31 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 7 2.4960 -0.1497 -2.3214 6 6 2.8216 -1.1656 -3.1403 7 6 3.4007 -1.0436 -4.5263 8 6 3.5087 -2.3207 -5.3617 9 6 4.7694 -1.6791 -4.7785 10 7 2.5441 -2.2718 -2.5174 11 8 2.0949 -2.0323 -1.4164 12 7 2.0196 -0.6924 1.1995 13 6 3.4878 -0.6693 1.2585 14 6 3.9594 -1.4670 2.4765 15 7 3.3772 -0.8863 3.6945 16 6 3.8668 -1.5787 4.8939 17 6 5.3059 -1.1456 5.1812 18 1 5.9175 -1.3058 4.2933 19 6 5.3263 0.2819 5.5400 20 7 5.3421 1.3835 5.8171 21 6 5.8650 -1.9712 6.3415 22 6 7.3192 -1.6319 6.5446 23 1 7.7969 -0.9008 5.9092 24 6 8.0398 -2.2549 7.5414 25 7 7.4579 -3.1448 8.3154 26 14 9.8425 -1.8348 7.7927 27 1 9.9751 -0.3889 8.1042 28 1 10.3849 -2.6352 8.9197 29 1 10.6005 -2.1459 6.5542 30 6 1.9089 -0.9093 3.6356 31 6 1.4374 -0.1115 2.4174 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 3.1719 -0.1161 -5.0513 36 1 3.1606 -3.2492 -4.9091 37 1 3.3510 -2.2338 -6.4368 38 1 5.4409 -1.1701 -5.4698 39 1 5.2511 -2.1851 -3.9419 40 1 3.8323 0.3613 1.3431 41 1 3.8953 -1.1160 0.3514 42 1 5.0469 -1.4271 2.5386 43 1 3.6382 -2.5041 2.3787 44 1 3.8376 -2.6558 4.7291 45 1 3.2341 -1.3239 5.7443 46 1 5.3085 -1.7437 7.2507 47 1 5.7681 -3.0324 6.1123 48 1 7.9650 -3.5833 9.0165 49 1 1.5645 -1.9399 3.5509 50 1 1.5016 -0.4627 4.5426 51 1 1.7586 0.9254 2.5152 52 1 0.3499 -0.1516 2.3554 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069485218.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:47 Heat of formation + Delta-G solvation = 132.760600 kcal Electronic energy + Delta-G solvation = -31912.005390 eV Core-core repulsion = 27722.982153 eV Total energy + Delta-G solvation = -4189.023238 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.206 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -45.85696 -39.81924 -38.08430 -37.42497 -35.89358 -35.32873 -33.74241 -32.80248 -31.66291 -31.40263 -30.27175 -27.51717 -25.93485 -25.63441 -24.69230 -23.50638 -22.98283 -22.84458 -22.26397 -21.64687 -20.40784 -19.82760 -18.34674 -17.95301 -16.86238 -16.62269 -16.33085 -16.23753 -15.92996 -15.20352 -15.03241 -14.92837 -14.78742 -14.57333 -14.33513 -14.01351 -13.22465 -13.10990 -12.96425 -12.86796 -12.78460 -12.59517 -12.48012 -12.32975 -12.19187 -12.03564 -11.98374 -11.88926 -11.52934 -11.40001 -11.38890 -11.22153 -11.18931 -11.04704 -11.01772 -11.01038 -10.92646 -10.63787 -10.52468 -10.16147 -9.96863 -9.53669 -9.24476 -8.82380 -8.45686 -8.24422 -6.09823 -4.12952 0.84566 1.81823 2.49549 2.92514 3.30907 3.34517 3.35204 3.38865 3.42669 3.71802 3.82550 3.83675 3.92537 4.22735 4.33244 4.40992 4.43293 4.46387 4.59117 4.72997 4.85173 4.89749 4.96611 5.09246 5.14103 5.14998 5.17193 5.20934 5.24515 5.28219 5.30218 5.39069 5.43103 5.53676 5.55108 5.61600 5.62088 5.64948 5.68448 5.71070 5.80521 5.86371 5.95138 6.03484 6.32960 6.46302 6.52949 6.59321 7.11116 7.11961 7.42201 7.52434 7.85165 7.91590 8.22946 8.58711 8.91469 9.52437 11.00965 Molecular weight = 359.21amu Principal moments of inertia in cm(-1) A = 0.011610 B = 0.002067 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.100587 B =13544.914526 C =15099.811273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.174 3.826 3 H 0.090 0.910 4 C 0.198 3.802 5 N -0.480 5.480 6 C 0.198 3.802 7 C -0.080 4.080 8 C -0.159 4.159 9 C -0.156 4.156 10 N -0.385 5.385 11 O 0.098 5.902 12 N -0.533 5.533 13 C 0.057 3.943 14 C 0.057 3.943 15 N -0.544 5.544 16 C 0.064 3.936 17 C 0.012 3.988 18 H 0.098 0.902 19 C 0.257 3.743 20 N -0.482 5.482 21 C 0.032 3.968 22 C -0.526 4.526 23 H 0.056 0.944 24 C 0.063 3.937 25 N -0.891 5.891 26 Si 0.891 3.109 27 H -0.277 1.277 28 H -0.286 1.286 29 H -0.275 1.275 30 C 0.058 3.942 31 C 0.057 3.943 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.135 0.865 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.099 0.901 40 H 0.050 0.950 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.048 0.952 44 H 0.058 0.942 45 H 0.079 0.921 46 H 0.026 0.974 47 H 0.037 0.963 48 H 0.263 0.737 49 H 0.046 0.954 50 H 0.083 0.917 51 H 0.049 0.951 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.898 1.824 -24.128 28.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.064 3.936 3 H 0.108 0.892 4 C -0.023 4.023 5 N -0.214 5.214 6 C -0.074 4.074 7 C -0.100 4.100 8 C -0.196 4.196 9 C -0.194 4.194 10 N -0.091 5.091 11 O 0.038 5.962 12 N -0.259 5.259 13 C -0.071 4.071 14 C -0.071 4.071 15 N -0.269 5.269 16 C -0.065 4.065 17 C -0.010 4.010 18 H 0.116 0.884 19 C -0.059 4.059 20 N -0.159 5.159 21 C -0.007 4.007 22 C -0.564 4.564 23 H 0.074 0.926 24 C -0.140 4.140 25 N -0.530 5.530 26 Si 0.719 3.281 27 H -0.202 1.202 28 H -0.212 1.212 29 H -0.201 1.201 30 C -0.070 4.070 31 C -0.071 4.071 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.153 0.847 36 H 0.122 0.878 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.117 0.883 40 H 0.068 0.932 41 H 0.087 0.913 42 H 0.106 0.894 43 H 0.066 0.934 44 H 0.076 0.924 45 H 0.097 0.903 46 H 0.044 0.956 47 H 0.055 0.945 48 H 0.073 0.927 49 H 0.065 0.935 50 H 0.101 0.899 51 H 0.068 0.932 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -15.603 2.910 -24.173 28.918 hybrid contribution 1.108 -0.170 0.252 1.149 sum -14.495 2.740 -23.921 28.103 Atomic orbital electron populations 1.21991 0.91087 1.04174 1.03535 1.20073 0.96610 0.94323 0.82629 0.89235 1.28549 0.95417 0.81364 0.97000 1.71828 1.17152 1.30687 1.01693 1.24752 1.00431 0.83677 0.98524 1.20062 1.01646 1.00098 0.88195 1.23081 1.01206 0.95797 0.99548 1.23091 0.90042 1.02670 1.03619 1.74613 1.16558 1.23836 0.94104 1.85373 1.58411 1.26495 1.25888 1.62212 1.08229 1.54316 1.01168 1.22219 0.86164 1.00260 0.98458 1.22176 1.00236 0.96472 0.88241 1.62183 1.06556 1.55635 1.02499 1.22225 0.95621 0.96836 0.91810 1.19213 0.95647 0.83582 1.02536 0.88391 1.28874 0.91196 0.94449 0.91419 1.80981 1.10447 1.13526 1.10939 1.19167 0.95976 0.94655 0.90901 1.21096 0.95079 1.23625 1.16642 0.92605 1.24949 0.98453 0.94897 0.95657 1.69926 1.36627 1.26667 1.19780 0.86659 0.85081 0.78560 0.77811 1.20234 1.21190 1.20071 1.22139 0.88113 0.99416 0.97326 1.22306 0.99540 0.97296 0.87913 0.90576 0.89914 0.91204 0.84738 0.87768 0.87425 0.87277 0.88278 0.93158 0.91282 0.89401 0.93361 0.92386 0.90258 0.95588 0.94465 0.92745 0.93543 0.89904 0.93245 0.89344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 8.75 37.16 0.33 -0.56 16 2 C 0.17 1.43 2.62 -68.87 -0.18 1.25 16 3 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 4 C 0.20 2.07 5.87 -13.06 -0.08 1.99 16 5 N -0.48 -5.55 11.55 -9.87 -0.11 -5.66 16 6 C 0.20 2.22 7.74 -156.38 -1.21 1.01 16 7 C -0.08 -0.66 6.33 -91.77 -0.58 -1.24 16 8 C -0.16 -1.05 10.14 -26.74 -0.27 -1.32 16 9 C -0.16 -1.08 10.23 -26.73 -0.27 -1.35 16 10 N -0.39 -4.68 11.77 30.90 0.36 -4.32 16 11 O 0.10 1.15 11.29 18.10 0.20 1.36 16 12 N -0.53 -4.90 4.57 -227.87 -1.04 -5.94 16 13 C 0.06 0.61 5.41 -3.77 -0.02 0.59 16 14 C 0.06 0.67 5.43 -3.77 -0.02 0.64 16 15 N -0.54 -6.82 4.36 -234.46 -1.02 -7.84 16 16 C 0.06 0.90 4.35 -3.82 -0.02 0.88 16 17 C 0.01 0.22 2.26 -93.41 -0.21 0.01 16 18 H 0.10 1.68 6.69 -51.93 -0.35 1.33 16 19 C 0.26 5.29 13.69 -20.76 -0.28 5.01 16 20 N -0.48 -10.80 18.54 42.15 0.78 -10.02 16 21 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16 22 C -0.53 -13.92 8.60 -34.44 -0.30 -14.22 16 23 H 0.06 1.47 7.59 -52.49 -0.40 1.08 16 24 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 25 N -0.89 -25.38 13.29 55.43 0.74 -24.65 16 26 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 28 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 29 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 30 C 0.06 0.59 5.57 -3.76 -0.02 0.57 16 31 C 0.06 0.48 5.18 -3.76 -0.02 0.46 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.37 6.26 -51.93 -0.33 0.05 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.13 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.10 0.81 7.91 -51.93 -0.41 0.40 16 37 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.77 7.04 -51.93 -0.37 0.40 16 42 H 0.09 1.07 6.67 -51.93 -0.35 0.72 16 43 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.77 8.01 -51.93 -0.42 0.36 16 45 H 0.08 1.12 7.85 -51.93 -0.41 0.71 16 46 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 49 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.08 0.80 8.00 -51.93 -0.42 0.39 16 51 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 52 H 0.09 0.55 6.03 -51.93 -0.31 0.24 16 LS Contribution 424.49 15.07 6.40 6.40 Total: -1.00 -31.78 424.49 -10.47 -42.25 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -8.38 Total: -3.79 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: -3.38 Total: -4.06 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: -0.30 Total: -58.42 kcal Atomic # 8 Polarization: 1.15 SS G_CDS: 0.20 Total: 1.36 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 6.40 Total: 6.40 kcal Total: -31.78 -10.47 -42.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069485218.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.011 kcal (2) G-P(sol) polarization free energy of solvation -31.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds