Wall clock time and date at job start Tue Mar 31 2020 05:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47016 * 2 1 4 4 C 1.50690 * 109.47710 * 239.99904 * 2 1 3 5 5 N 1.31136 * 126.55603 * 101.80356 * 4 2 1 6 6 C 1.34488 * 105.61648 * 180.02562 * 5 4 2 7 7 C 1.50706 * 126.28754 * 179.97438 * 6 5 4 8 8 C 1.52992 * 117.49868 * 188.62382 * 7 6 5 9 9 C 1.52995 * 117.49998 * 119.99926 * 7 6 5 10 10 N 1.29943 * 107.42766 * 0.02562 * 6 5 4 11 11 O 1.21304 * 110.24950 * 359.70009 * 10 6 5 12 12 N 1.46899 * 109.46997 * 119.99534 * 2 1 3 13 13 C 1.46954 * 111.00057 * 182.06563 * 12 2 1 14 14 C 1.53046 * 109.36497 * 183.19132 * 13 12 2 15 15 N 1.46953 * 109.36460 * 301.59357 * 14 13 12 16 16 C 1.46899 * 111.00262 * 183.18992 * 15 14 13 17 17 C 1.53003 * 109.47479 * 75.21340 * 16 15 14 18 18 H 1.09001 * 109.46531 * 305.79537 * 17 16 15 19 19 C 1.47199 * 109.47039 * 65.78857 * 17 16 15 20 20 N 7.09115 * 122.51914 * 76.62187 * 2 1 3 21 21 C 1.52993 * 109.47288 * 185.79496 * 17 16 15 22 22 C 1.50704 * 109.46880 * 175.00214 * 21 17 16 23 23 H 1.08000 * 120.00037 * 359.97438 * 22 21 17 24 24 C 1.37879 * 119.99747 * 179.97438 * 22 21 17 25 25 N 1.31513 * 120.00127 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 119.99868 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47152 * 60.00071 * 26 24 22 28 28 H 1.48498 * 109.47134 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.47187 * 299.99666 * 26 24 22 30 30 C 1.46958 * 110.87949 * 59.32301 * 15 14 13 31 31 C 1.46964 * 110.99930 * 305.85993 * 12 2 1 32 32 H 1.08992 * 109.46848 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47267 * 300.00645 * 1 2 3 34 34 H 1.09004 * 109.46891 * 60.00120 * 1 2 3 35 35 H 1.09000 * 115.54547 * 334.32714 * 7 6 5 36 36 H 1.09002 * 117.50380 * 0.02562 * 8 7 6 37 37 H 1.09006 * 117.50151 * 145.01738 * 8 7 6 38 38 H 1.08993 * 117.49897 * 214.97999 * 9 7 6 39 39 H 1.08994 * 117.49714 * 359.97438 * 9 7 6 40 40 H 1.09003 * 109.49543 * 63.21669 * 13 12 2 41 41 H 1.09007 * 109.48896 * 303.15367 * 13 12 2 42 42 H 1.09005 * 109.49055 * 181.62984 * 14 13 12 43 43 H 1.09006 * 109.49274 * 61.56333 * 14 13 12 44 44 H 1.09003 * 109.47280 * 315.21130 * 16 15 14 45 45 H 1.09005 * 109.47136 * 195.21245 * 16 15 14 46 46 H 1.09001 * 109.47137 * 294.99560 * 21 17 16 47 47 H 1.08997 * 109.47620 * 55.00037 * 21 17 16 48 48 H 0.97003 * 119.99896 * 179.97438 * 25 24 22 49 49 H 1.08992 * 109.48957 * 60.64444 * 30 15 14 50 50 H 1.08997 * 109.48722 * 180.71580 * 30 15 14 51 51 H 1.08995 * 109.48802 * 296.77866 * 31 12 2 52 52 H 1.09004 * 109.48566 * 56.85048 * 31 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 7 2.4960 -0.1497 -2.3214 6 6 2.8216 -1.1656 -3.1403 7 6 3.4007 -1.0436 -4.5263 8 6 3.5087 -2.3207 -5.3617 9 6 4.7694 -1.6791 -4.7785 10 7 2.5441 -2.2718 -2.5174 11 8 2.0949 -2.0323 -1.4164 12 7 2.0196 -0.6924 1.1995 13 6 3.4878 -0.6693 1.2585 14 6 3.9594 -1.4670 2.4765 15 7 3.3772 -0.8863 3.6945 16 6 3.8668 -1.5787 4.8939 17 6 5.3059 -1.1456 5.1812 18 1 5.9175 -1.3058 4.2933 19 6 5.3263 0.2819 5.5400 20 7 5.3421 1.3835 5.8171 21 6 5.8650 -1.9712 6.3415 22 6 7.3192 -1.6319 6.5446 23 1 7.7969 -0.9008 5.9092 24 6 8.0398 -2.2549 7.5414 25 7 7.4579 -3.1448 8.3154 26 14 9.8425 -1.8348 7.7927 27 1 9.9751 -0.3889 8.1042 28 1 10.3849 -2.6352 8.9197 29 1 10.6005 -2.1459 6.5542 30 6 1.9089 -0.9093 3.6356 31 6 1.4374 -0.1115 2.4174 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 3.1719 -0.1161 -5.0513 36 1 3.1606 -3.2492 -4.9091 37 1 3.3510 -2.2338 -6.4368 38 1 5.4409 -1.1701 -5.4698 39 1 5.2511 -2.1851 -3.9419 40 1 3.8323 0.3613 1.3431 41 1 3.8953 -1.1160 0.3514 42 1 5.0469 -1.4271 2.5386 43 1 3.6382 -2.5041 2.3787 44 1 3.8376 -2.6558 4.7291 45 1 3.2341 -1.3239 5.7443 46 1 5.3085 -1.7437 7.2507 47 1 5.7681 -3.0324 6.1123 48 1 7.9650 -3.5833 9.0165 49 1 1.5645 -1.9399 3.5509 50 1 1.5016 -0.4627 4.5426 51 1 1.7586 0.9254 2.5152 52 1 0.3499 -0.1516 2.3554 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069485218.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:46 Heat of formation + Delta-G solvation = 111.855208 kcal Electronic energy + Delta-G solvation = -31912.911916 eV Core-core repulsion = 27722.982153 eV Total energy + Delta-G solvation = -4189.929764 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.206 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -46.69051 -40.67043 -38.72101 -38.60831 -37.09724 -36.26224 -35.48324 -34.07300 -32.95153 -32.26419 -31.15817 -28.86895 -27.08131 -26.40111 -25.68790 -24.34500 -24.13377 -23.50123 -23.38267 -22.97989 -21.17345 -20.61692 -19.19387 -18.74329 -18.52731 -18.17176 -17.36429 -16.98827 -16.65761 -16.59643 -16.03088 -15.81130 -15.70351 -15.58726 -15.44550 -15.09376 -14.61496 -14.24938 -14.06741 -13.87845 -13.79122 -13.70463 -13.49740 -13.33285 -13.19244 -13.11582 -12.98688 -12.86504 -12.68288 -12.54343 -12.50429 -12.45838 -12.38834 -12.22364 -12.20506 -12.06972 -11.90769 -11.76873 -11.56841 -11.56045 -11.34064 -11.05890 -10.71892 -10.54529 -9.58397 -9.21569 -8.19119 -6.27076 0.03165 1.02332 1.40500 1.42116 1.49083 1.73446 2.08297 2.15815 2.20604 2.41270 2.70164 2.76500 2.91363 3.11084 3.16209 3.36780 3.58089 3.74899 3.80399 3.84028 3.91608 4.01068 4.09846 4.20625 4.23709 4.32697 4.36156 4.43589 4.50918 4.54051 4.55558 4.65185 4.72235 4.73103 4.75797 4.79738 4.80827 4.89207 4.92315 4.97591 4.99972 5.00314 5.03764 5.11410 5.13864 5.23474 5.47324 5.62708 5.73388 5.79670 5.82932 6.07842 6.18906 6.23510 6.83773 6.94884 7.09210 7.41153 8.91401 Molecular weight = 359.21amu Principal moments of inertia in cm(-1) A = 0.011610 B = 0.002067 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.100587 B =13544.914526 C =15099.811273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.175 3.825 3 H 0.094 0.906 4 C 0.203 3.797 5 N -0.499 5.499 6 C 0.194 3.806 7 C -0.099 4.099 8 C -0.148 4.148 9 C -0.151 4.151 10 N -0.406 5.406 11 O 0.084 5.916 12 N -0.534 5.534 13 C 0.065 3.935 14 C 0.059 3.941 15 N -0.554 5.554 16 C 0.075 3.925 17 C 0.023 3.977 18 H 0.110 0.890 19 C 0.268 3.732 20 N -0.515 5.515 21 C 0.039 3.961 22 C -0.539 4.539 23 H 0.052 0.948 24 C 0.012 3.988 25 N -0.922 5.922 26 Si 0.946 3.054 27 H -0.281 1.281 28 H -0.281 1.281 29 H -0.264 1.264 30 C 0.057 3.943 31 C 0.061 3.939 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.075 0.925 35 H 0.149 0.851 36 H 0.089 0.911 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.082 0.918 40 H 0.040 0.960 41 H 0.061 0.939 42 H 0.079 0.921 43 H 0.050 0.950 44 H 0.070 0.930 45 H 0.081 0.919 46 H 0.003 0.997 47 H 0.034 0.966 48 H 0.264 0.736 49 H 0.052 0.948 50 H 0.089 0.911 51 H 0.044 0.956 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.698 2.217 -25.583 30.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.065 3.935 3 H 0.111 0.889 4 C -0.018 4.018 5 N -0.233 5.233 6 C -0.078 4.078 7 C -0.118 4.118 8 C -0.185 4.185 9 C -0.190 4.190 10 N -0.115 5.115 11 O 0.027 5.973 12 N -0.260 5.260 13 C -0.063 4.063 14 C -0.070 4.070 15 N -0.279 5.279 16 C -0.054 4.054 17 C 0.001 3.999 18 H 0.128 0.872 19 C -0.048 4.048 20 N -0.192 5.192 21 C 0.000 4.000 22 C -0.577 4.577 23 H 0.070 0.930 24 C -0.187 4.187 25 N -0.562 5.562 26 Si 0.772 3.228 27 H -0.207 1.207 28 H -0.207 1.207 29 H -0.189 1.189 30 C -0.071 4.071 31 C -0.066 4.066 32 H 0.093 0.907 33 H 0.121 0.879 34 H 0.093 0.907 35 H 0.167 0.833 36 H 0.107 0.893 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.101 0.899 40 H 0.059 0.941 41 H 0.079 0.921 42 H 0.098 0.902 43 H 0.068 0.932 44 H 0.088 0.912 45 H 0.100 0.900 46 H 0.022 0.978 47 H 0.052 0.948 48 H 0.073 0.927 49 H 0.070 0.930 50 H 0.107 0.893 51 H 0.062 0.938 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.420 3.306 -25.624 30.613 hybrid contribution 1.344 -0.280 0.688 1.536 sum -15.075 3.026 -24.936 29.296 Atomic orbital electron populations 1.22002 0.88930 1.04467 1.04809 1.20262 0.98126 0.93837 0.81273 0.88890 1.29023 0.94360 0.81011 0.97365 1.71841 1.18052 1.31123 1.02323 1.25329 0.99683 0.83342 0.99464 1.20336 1.02708 1.01539 0.87252 1.23145 1.00456 0.94322 1.00624 1.23156 0.89971 1.02352 1.03474 1.74600 1.17808 1.24549 0.94534 1.85335 1.58864 1.27094 1.25985 1.62206 1.07126 1.54789 1.01904 1.22053 0.87376 0.99319 0.97560 1.22148 0.99800 0.96687 0.88317 1.62119 1.08359 1.55483 1.01947 1.22025 0.92976 0.97514 0.92893 1.19147 0.98457 0.81390 1.00907 0.87216 1.29317 0.90124 0.94827 0.90542 1.80978 1.11755 1.14638 1.11854 1.18982 0.94160 0.95154 0.91723 1.21513 0.96938 1.23030 1.16240 0.92997 1.25696 1.02242 0.95048 0.95745 1.70018 1.38000 1.27715 1.20423 0.85781 0.80928 0.77876 0.78188 1.20695 1.20672 1.18901 1.22239 0.86253 1.00155 0.98466 1.22358 1.01095 0.96455 0.86710 0.90738 0.87916 0.90656 0.83325 0.89252 0.84805 0.84938 0.89918 0.94124 0.92087 0.90231 0.93206 0.91200 0.90013 0.97839 0.94775 0.92711 0.92996 0.89291 0.93798 0.86422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.75 71.98 0.63 -0.73 16 2 C 0.18 2.63 2.62 44.17 0.12 2.74 16 3 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 4 C 0.20 4.14 5.87 88.38 0.52 4.66 16 5 N -0.50 -11.40 11.55 -303.21 -3.50 -14.90 16 6 C 0.19 4.33 7.74 138.47 1.07 5.40 16 7 C -0.10 -1.54 6.33 -11.54 -0.07 -1.62 16 8 C -0.15 -1.78 10.14 30.59 0.31 -1.47 16 9 C -0.15 -1.93 10.23 30.59 0.31 -1.61 16 10 N -0.41 -9.97 11.77 -60.32 -0.71 -10.68 16 11 O 0.08 1.97 11.29 74.82 0.85 2.82 16 12 N -0.53 -8.99 4.57 -874.86 -4.00 -12.98 16 13 C 0.07 1.35 5.41 86.31 0.47 1.82 16 14 C 0.06 1.32 5.43 86.31 0.47 1.79 16 15 N -0.55 -13.13 4.36 -895.70 -3.91 -17.04 16 16 C 0.07 2.03 4.35 86.30 0.38 2.41 16 17 C 0.02 0.82 2.26 -12.60 -0.03 0.79 16 18 H 0.11 3.68 6.69 -2.39 -0.02 3.67 16 19 C 0.27 10.93 13.69 89.44 1.22 12.15 16 20 N -0.51 -22.95 18.54 20.01 0.37 -22.58 16 21 C 0.04 1.76 4.42 29.85 0.13 1.90 16 22 C -0.54 -28.56 8.60 25.60 0.22 -28.34 16 23 H 0.05 2.73 7.59 -2.91 -0.02 2.71 16 24 C 0.01 0.65 5.46 84.66 0.46 1.11 16 25 N -0.92 -52.80 13.29 21.45 0.28 -52.51 16 26 Si 0.95 43.55 29.54 68.60 2.03 45.58 16 27 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 28 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 29 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 30 C 0.06 1.02 5.57 86.31 0.48 1.50 16 31 C 0.06 0.88 5.18 86.31 0.45 1.32 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.10 0.57 6.26 -2.39 -0.01 0.55 16 34 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.15 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.09 1.37 7.91 -2.39 -0.02 1.35 16 37 H 0.13 0.88 8.14 -2.38 -0.02 0.86 16 38 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.06 1.36 7.04 -2.38 -0.02 1.34 16 42 H 0.08 1.89 6.67 -2.38 -0.02 1.88 16 43 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 44 H 0.07 1.76 8.01 -2.39 -0.02 1.74 16 45 H 0.08 2.20 7.85 -2.38 -0.02 2.18 16 46 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 47 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 49 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 50 H 0.09 1.51 8.00 -2.39 -0.02 1.50 16 51 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 52 H 0.12 1.04 6.03 -2.39 -0.01 1.03 16 Total: -1.00 -68.55 424.49 -0.53 -69.09 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: 0.92 Total: 9.41 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: 7.14 Total: 3.82 kcal Atomic # 7 Polarization: -119.24 SS G_CDS: -11.46 Total: -130.70 kcal Atomic # 8 Polarization: 1.97 SS G_CDS: 0.85 Total: 2.82 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -68.55 -0.53 -69.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069485218.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.944 kcal (2) G-P(sol) polarization free energy of solvation -68.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds