Wall clock time and date at job start Tue Mar 31 2020 06:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99764 * 2 1 4 4 H 1.48500 * 109.46948 * 269.99299 * 3 2 1 5 5 H 1.48494 * 109.47619 * 29.99345 * 3 2 1 6 6 H 1.48503 * 109.47112 * 149.99978 * 3 2 1 7 7 C 1.37872 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00460 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99899 * 180.02562 * 7 2 1 10 10 N 1.46505 * 109.47198 * 179.97438 * 9 7 2 11 11 C 1.46503 * 120.00032 * 89.99783 * 10 9 7 12 12 C 1.50695 * 109.47313 * 90.00128 * 11 10 9 13 13 C 1.38678 * 120.41675 * 270.25293 * 12 11 10 14 14 C 1.38627 * 118.41930 * 180.24221 * 13 12 11 15 15 C 1.38232 * 119.16085 * 359.75178 * 14 13 12 16 16 N 1.31857 * 120.76541 * 359.97438 * 15 14 13 17 17 C 1.31889 * 121.72235 * 0.02562 * 16 15 14 18 18 C 1.34778 * 119.99626 * 269.99560 * 10 9 7 19 19 O 1.21284 * 119.99808 * 179.97438 * 18 10 9 20 20 C 1.50699 * 120.00222 * 359.97438 * 18 10 9 21 21 C 1.52997 * 109.46986 * 179.97438 * 20 18 10 22 22 C 1.50699 * 109.46986 * 179.97438 * 21 20 18 23 23 C 1.38208 * 119.99827 * 264.72247 * 22 21 20 24 24 C 1.38436 * 119.99894 * 179.77124 * 23 22 21 25 25 F 1.35095 * 120.00393 * 180.27599 * 24 23 22 26 26 C 1.38476 * 119.99751 * 0.52821 * 24 23 22 27 27 C 1.38166 * 120.00109 * 359.72822 * 26 24 23 28 28 C 1.38423 * 120.00312 * 85.00248 * 22 21 20 29 29 F 1.35105 * 119.99860 * 359.97438 * 28 22 21 30 30 H 0.97003 * 120.00146 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.47781 * 59.99756 * 9 7 2 32 32 H 1.09006 * 109.47155 * 299.99609 * 9 7 2 33 33 H 1.09001 * 109.46632 * 329.99937 * 11 10 9 34 34 H 1.08996 * 109.46728 * 209.99930 * 11 10 9 35 35 H 1.07994 * 120.78944 * 359.96926 * 13 12 11 36 36 H 1.07997 * 120.42083 * 179.72800 * 14 13 12 37 37 H 1.07999 * 119.61954 * 180.02562 * 15 14 13 38 38 H 1.08002 * 119.61237 * 179.97438 * 17 16 15 39 39 H 1.08999 * 109.46849 * 299.99992 * 20 18 10 40 40 H 1.09002 * 109.47000 * 60.00232 * 20 18 10 41 41 H 1.08999 * 109.47464 * 299.99792 * 21 20 18 42 42 H 1.09001 * 109.47410 * 60.00166 * 21 20 18 43 43 H 1.08000 * 120.00165 * 0.02571 * 23 22 21 44 44 H 1.07994 * 120.00180 * 179.70341 * 26 24 23 45 45 H 1.07998 * 120.00186 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6998 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1940 0.0011 10 7 3.9999 -2.5752 0.0022 11 6 4.2445 -3.2667 -1.2660 12 6 5.6679 -3.0302 -1.7007 13 6 5.9869 -1.9411 -2.4976 14 6 7.3085 -1.7661 -2.8775 15 6 8.2586 -2.6736 -2.4480 16 7 7.9198 -3.6951 -1.6860 17 6 6.6726 -3.8927 -1.3055 18 6 4.2241 -3.2097 1.1700 19 8 4.6280 -4.3533 1.1710 20 6 3.9731 -2.4982 2.4745 21 6 4.3034 -3.4350 3.6382 22 6 4.0529 -2.7232 4.9426 23 6 5.0939 -2.0907 5.5957 24 6 4.8629 -1.4328 6.7916 25 9 5.8792 -0.8097 7.4272 26 6 3.5910 -1.4179 7.3391 27 6 2.5515 -2.0547 6.6890 28 6 2.7815 -2.7079 5.4898 29 9 1.7650 -3.3306 4.8540 30 1 -0.4850 0.8401 -0.0004 31 1 3.8746 -0.6799 0.8911 32 1 3.8752 -0.6804 -0.8889 33 1 3.5639 -2.8831 -2.0261 34 1 4.0775 -4.3358 -1.1349 35 1 5.2231 -1.2483 -2.8184 36 1 7.5923 -0.9315 -3.5014 37 1 9.2905 -2.5442 -2.7391 38 1 6.4331 -4.7410 -0.6815 39 1 4.6036 -1.6109 2.5316 40 1 2.9251 -2.2036 2.5319 41 1 3.6726 -4.3220 3.5809 42 1 5.3512 -3.7299 3.5810 43 1 6.0867 -2.1061 5.1709 44 1 3.4117 -0.9088 8.2745 45 1 1.5597 -2.0434 7.1162 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069520800.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:40 Heat of formation + Delta-G solvation = -71.844008 kcal Electronic energy + Delta-G solvation = -31626.829824 eV Core-core repulsion = 27052.002242 eV Total energy + Delta-G solvation = -4574.827583 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 360.139 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.04046 -48.83639 -40.19993 -39.35992 -38.76948 -35.50310 -34.05555 -33.01694 -32.22713 -31.55419 -30.50212 -29.50282 -28.18989 -26.46086 -24.47888 -23.45928 -23.03841 -22.51562 -22.03838 -21.15152 -18.43080 -17.69889 -17.32939 -17.30476 -17.18716 -16.88245 -16.51697 -15.95401 -15.85643 -15.60736 -15.34808 -15.28461 -14.73334 -14.48955 -14.33272 -14.22021 -13.83620 -13.56909 -13.41384 -13.18037 -12.92532 -12.82632 -12.71420 -12.65709 -12.33463 -12.14972 -12.10941 -11.81010 -11.51375 -11.48819 -11.02479 -11.01121 -10.74921 -10.74028 -10.36808 -9.80694 -9.66518 -9.43022 -9.31978 -9.18139 -8.85088 -8.77748 -8.56638 -7.92583 -6.29210 -4.31725 0.84940 0.90203 1.20340 1.40498 3.09705 3.17612 3.19986 3.20713 3.23524 3.64661 4.01144 4.10262 4.14963 4.18516 4.42975 4.57305 4.59357 4.82820 4.92016 5.00160 5.02589 5.06305 5.11294 5.20362 5.25215 5.34476 5.37111 5.53563 5.65160 5.76645 5.83772 5.84411 5.86916 5.95087 5.98503 6.02322 6.09821 6.20550 6.27019 6.33125 6.43046 6.47332 6.56486 6.69531 6.84094 7.16451 7.34433 7.98423 8.09024 8.30128 8.72745 8.80738 9.29492 10.83198 Molecular weight = 360.14amu Principal moments of inertia in cm(-1) A = 0.007402 B = 0.003577 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3781.788622 B = 7826.361834 C = 9735.665925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.079 3.921 3 Si 0.867 3.133 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.543 4.543 8 H 0.080 0.920 9 C 0.209 3.791 10 N -0.586 5.586 11 C 0.160 3.840 12 C -0.146 4.146 13 C -0.063 4.063 14 C -0.179 4.179 15 C 0.089 3.911 16 N -0.491 5.491 17 C 0.118 3.882 18 C 0.524 3.476 19 O -0.567 6.567 20 C -0.133 4.133 21 C -0.065 4.065 22 C -0.081 4.081 23 C -0.123 4.123 24 C 0.087 3.913 25 F -0.138 7.138 26 C -0.132 4.132 27 C -0.124 4.124 28 C 0.099 3.901 29 F -0.126 7.126 30 H 0.267 0.733 31 H 0.035 0.965 32 H 0.028 0.972 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.136 0.864 36 H 0.131 0.869 37 H 0.150 0.850 38 H 0.160 0.840 39 H 0.089 0.911 40 H 0.110 0.890 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.145 0.855 44 H 0.143 0.857 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.207 -1.686 6.531 12.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.125 4.125 3 Si 0.694 3.306 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.098 0.902 9 C 0.088 3.912 10 N -0.315 5.315 11 C 0.036 3.964 12 C -0.149 4.149 13 C -0.089 4.089 14 C -0.199 4.199 15 C -0.068 4.068 16 N -0.199 5.199 17 C -0.040 4.040 18 C 0.313 3.687 19 O -0.447 6.447 20 C -0.172 4.172 21 C -0.102 4.102 22 C -0.082 4.082 23 C -0.142 4.142 24 C 0.067 3.933 25 F -0.117 7.117 26 C -0.151 4.151 27 C -0.143 4.143 28 C 0.079 3.921 29 F -0.104 7.104 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.046 0.954 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.153 0.847 36 H 0.149 0.851 37 H 0.168 0.832 38 H 0.177 0.823 39 H 0.107 0.893 40 H 0.129 0.871 41 H 0.106 0.894 42 H 0.103 0.897 43 H 0.162 0.838 44 H 0.160 0.840 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 10.868 -2.723 6.793 13.102 hybrid contribution -0.466 1.968 -0.359 2.054 sum 10.402 -0.755 6.434 12.255 Atomic orbital electron populations 1.69882 1.06190 1.27252 1.49076 1.24853 0.94690 0.98772 0.94197 0.86989 0.80505 0.84199 0.78933 1.19878 1.20759 1.18896 1.21349 0.88866 0.95102 1.52815 0.90173 1.19839 0.95950 0.77824 0.97581 1.47918 1.63626 1.15921 1.04080 1.20159 0.90317 0.99056 0.86869 1.21465 0.98625 0.96319 0.98480 1.21632 0.96653 0.95957 0.94683 1.22105 0.94105 1.01225 1.02465 1.22716 0.99666 0.90444 0.93957 1.67728 1.20361 1.20458 1.11395 1.22879 0.87268 0.98329 0.95475 1.20391 0.76468 0.86209 0.85625 1.90592 1.48100 1.18183 1.87862 1.21613 1.05678 0.98796 0.91150 1.20343 1.03876 0.97762 0.88267 1.19892 0.91362 0.99114 0.97792 1.20943 1.00476 0.98549 0.94233 1.17640 0.85052 0.97551 0.93034 1.91503 1.58484 1.80397 1.81316 1.20934 0.90880 1.01731 1.01564 1.21005 1.00554 0.98357 0.94350 1.17596 0.84817 0.97136 0.92548 1.91566 1.57754 1.79872 1.81204 0.92278 0.94761 0.95442 0.88969 0.89304 0.84660 0.85085 0.83249 0.82274 0.89319 0.87140 0.89381 0.89721 0.83765 0.83955 0.83665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.99 13.96 55.43 0.77 -24.21 16 2 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.87 19.13 27.47 -169.99 -4.67 14.46 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.26 -5.51 6.54 56.52 0.37 -5.14 16 7 C -0.54 -13.57 9.84 -34.44 -0.34 -13.91 16 8 H 0.08 2.26 8.06 -52.49 -0.42 1.83 16 9 C 0.21 4.33 4.03 -5.19 -0.02 4.31 16 10 N -0.59 -11.09 2.44 -176.43 -0.43 -11.52 16 11 C 0.16 2.67 5.56 -5.19 -0.03 2.64 16 12 C -0.15 -2.24 5.48 -104.48 -0.57 -2.82 16 13 C -0.06 -0.87 9.86 -39.28 -0.39 -1.26 16 14 C -0.18 -2.17 10.11 -39.44 -0.40 -2.57 16 15 C 0.09 1.14 11.18 -17.54 -0.20 0.94 16 16 N -0.49 -7.56 10.36 -13.25 -0.14 -7.70 16 17 C 0.12 1.86 10.86 -17.55 -0.19 1.66 16 18 C 0.52 9.85 7.67 -10.99 -0.08 9.77 16 19 O -0.57 -11.23 15.12 5.55 0.08 -11.14 16 20 C -0.13 -2.22 4.23 -27.89 -0.12 -2.34 16 21 C -0.06 -0.94 4.41 -27.89 -0.12 -1.06 16 22 C -0.08 -1.06 5.14 -104.57 -0.54 -1.60 16 23 C -0.12 -1.45 9.66 -39.52 -0.38 -1.83 16 24 C 0.09 0.99 7.30 -39.42 -0.29 0.71 16 25 F -0.14 -1.63 17.27 2.25 0.04 -1.60 16 26 C -0.13 -1.35 10.02 -39.52 -0.40 -1.75 16 27 C -0.12 -1.36 10.02 -39.52 -0.40 -1.76 16 28 C 0.10 1.33 7.24 -39.43 -0.29 1.05 16 29 F -0.13 -1.95 16.57 2.25 0.04 -1.91 16 30 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.03 0.71 5.50 -51.93 -0.29 0.42 16 32 H 0.03 0.55 7.50 -51.93 -0.39 0.16 16 33 H 0.09 1.51 8.03 -51.93 -0.42 1.09 16 34 H 0.09 1.48 7.37 -51.93 -0.38 1.10 16 35 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 36 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.15 1.44 8.06 -52.49 -0.42 1.01 16 38 H 0.16 2.56 7.62 -52.49 -0.40 2.16 16 39 H 0.09 1.38 7.40 -51.93 -0.38 1.00 16 40 H 0.11 2.07 8.00 -51.93 -0.42 1.65 16 41 H 0.09 1.36 7.75 -51.93 -0.40 0.95 16 42 H 0.08 1.15 8.01 -51.93 -0.42 0.73 16 43 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 44 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 45 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 393.91 15.07 5.94 5.94 Total: -1.00 -29.72 393.91 -8.83 -38.55 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -5.62 Total: 6.98 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -4.84 Total: -7.85 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: 0.21 Total: -43.43 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.08 Total: -11.14 kcal Atomic # 9 Polarization: -3.58 SS G_CDS: 0.08 Total: -3.51 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.67 Total: 14.46 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -29.72 -8.83 -38.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069520800.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.295 kcal (2) G-P(sol) polarization free energy of solvation -29.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds