Wall clock time and date at job start Tue Mar 31 2020 06:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.33251 * 125.53062 * 2 1 4 4 C 1.30827 * 109.83202 * 179.97438 * 3 2 1 5 5 C 1.50692 * 125.96190 * 179.97438 * 4 3 2 6 6 N 1.34440 * 108.07788 * 0.02562 * 4 3 2 7 7 C 1.46491 * 126.82357 * 179.97438 * 6 4 3 8 8 C 1.52995 * 109.47441 * 89.99726 * 7 6 4 9 9 H 1.09007 * 110.36852 * 302.65022 * 8 7 6 10 10 C 1.54379 * 110.41264 * 180.17382 * 8 7 6 11 11 C 1.54263 * 105.06038 * 217.36485 * 10 8 7 12 12 C 1.54385 * 105.06096 * 0.02562 * 11 10 8 13 13 N 1.48560 * 104.59527 * 23.84843 * 12 11 10 14 14 C 1.46896 * 111.00337 * 200.96527 * 13 12 11 15 15 C 1.52999 * 109.46704 * 285.41883 * 14 13 12 16 16 C 1.50708 * 109.47186 * 179.97438 * 15 14 13 17 17 O 1.21295 * 119.99406 * 359.97438 * 16 15 14 18 18 N 1.34774 * 120.00179 * 179.72311 * 16 15 14 19 19 C 1.37099 * 120.00023 * 180.27625 * 18 16 15 20 20 H 1.08001 * 120.00105 * 17.71640 * 19 18 16 21 21 C 1.38951 * 119.99774 * 197.72018 * 19 18 16 22 22 N 1.31412 * 119.99998 * 21.38800 * 21 19 18 23 23 Si 1.86796 * 119.99871 * 201.38330 * 21 19 18 24 24 H 1.48499 * 109.47162 * 60.00000 * 23 21 19 25 25 H 1.48496 * 109.47213 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47211 * 300.00098 * 23 21 19 27 27 C 1.46500 * 119.99714 * 0.27530 * 18 16 15 28 28 C 1.47201 * 109.47234 * 84.23220 * 27 18 16 29 29 N 7.88365 * 83.99356 * 127.12898 * 2 1 3 30 30 N 1.30714 * 125.52871 * 180.28361 * 2 1 3 31 31 H 1.09005 * 109.47522 * 89.97529 * 1 2 3 32 32 H 1.09000 * 109.47774 * 209.97769 * 1 2 3 33 33 H 1.09006 * 109.47476 * 329.97857 * 1 2 3 34 34 H 1.08997 * 109.47766 * 270.04291 * 5 4 3 35 35 H 1.09000 * 109.47011 * 30.04684 * 5 4 3 36 36 H 1.09008 * 109.47112 * 150.04231 * 5 4 3 37 37 H 1.08999 * 109.47122 * 329.99540 * 7 6 4 38 38 H 1.08996 * 109.47169 * 209.99763 * 7 6 4 39 39 H 1.08990 * 110.32398 * 336.26296 * 10 8 7 40 40 H 1.08994 * 110.32523 * 98.47569 * 10 8 7 41 41 H 1.09006 * 110.32018 * 118.89332 * 11 10 8 42 42 H 1.08996 * 110.33034 * 241.00450 * 11 10 8 43 43 H 1.09005 * 110.40766 * 265.07404 * 12 11 10 44 44 H 1.08996 * 110.41355 * 142.62919 * 12 11 10 45 45 H 1.09002 * 109.47621 * 165.41932 * 14 13 12 46 46 H 1.09001 * 109.47411 * 45.41464 * 14 13 12 47 47 H 1.09001 * 109.47480 * 60.00001 * 15 14 13 48 48 H 1.09001 * 109.47278 * 299.99613 * 15 14 13 49 49 H 0.96997 * 119.99901 * 180.02562 * 22 21 19 50 50 H 1.09007 * 109.47037 * 204.22936 * 27 18 16 51 51 H 1.08998 * 109.47291 * 324.22846 * 27 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2813 1.0844 0.0000 4 6 3.5407 0.7304 0.0006 5 6 4.7227 1.6652 0.0002 6 7 3.5965 -0.6128 0.0003 7 6 4.8046 -1.4414 0.0003 8 6 5.2252 -1.7300 1.4427 9 1 5.3876 -0.7981 1.9843 10 6 6.5007 -2.5995 1.4679 11 6 6.3059 -3.5624 2.6572 12 6 4.9289 -3.1942 3.2502 13 7 4.1963 -2.5553 2.1267 14 6 3.0959 -1.7187 2.6238 15 6 1.9479 -2.6134 3.0954 16 6 0.8192 -1.7552 3.6061 17 8 0.9232 -0.5467 3.5943 18 7 -0.3075 -2.3302 4.0710 19 6 -1.3365 -1.5493 4.5302 20 1 -1.3794 -0.5027 4.2668 21 6 -2.3243 -2.1042 5.3347 22 7 -2.0857 -3.2138 5.9971 23 14 -3.9912 -1.2729 5.4746 24 1 -4.6216 -1.1987 4.1321 25 1 -4.8606 -2.0576 6.3876 26 1 -3.8164 0.0988 6.0159 27 6 -0.4327 -3.7898 4.0855 28 6 0.1943 -4.3239 5.3055 29 7 0.6819 -4.7325 6.2510 30 7 2.2665 -1.0638 -0.0053 31 1 -0.3634 0.0004 -1.0277 32 1 -0.3634 -0.8901 0.5135 33 1 -0.3634 0.8898 0.5142 34 1 5.0075 1.8905 -1.0275 35 1 4.4557 2.5886 0.5140 36 1 5.5599 1.1925 0.5139 37 1 5.6076 -0.9129 -0.5135 38 1 4.6009 -2.3807 -0.5137 39 1 6.5949 -3.1604 0.5381 40 1 7.3807 -1.9761 1.6258 41 1 6.3045 -4.5961 2.3111 42 1 7.0914 -3.4130 3.3980 43 1 5.0460 -2.4922 4.0757 44 1 4.4065 -4.0909 3.5836 45 1 2.7441 -1.0678 1.8234 46 1 3.4491 -1.1113 3.4572 47 1 2.2997 -3.2643 3.8959 48 1 1.5947 -3.2207 2.2621 49 1 -2.7753 -3.6014 6.5584 50 1 -1.4876 -4.0642 4.0692 51 1 0.0646 -4.2059 3.2094 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069521272.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:11 Heat of formation + Delta-G solvation = 109.618748 kcal Electronic energy + Delta-G solvation = -34337.775708 eV Core-core repulsion = 30082.323053 eV Total energy + Delta-G solvation = -4255.452655 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 360.201 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.10261 -39.38054 -38.57887 -35.72845 -34.62664 -34.27218 -33.14349 -32.60355 -31.77415 -30.51284 -29.15595 -28.97874 -27.56258 -27.33058 -25.20447 -24.73893 -22.81638 -20.97505 -20.84985 -20.48198 -20.08916 -18.83332 -17.83459 -16.80104 -16.64710 -16.40475 -16.21856 -15.45426 -15.07837 -14.80173 -14.58658 -14.38901 -14.28350 -14.13459 -13.54970 -13.36524 -13.26976 -12.90375 -12.88828 -12.81656 -12.74891 -12.67234 -12.39385 -12.08369 -11.96347 -11.88631 -11.75211 -11.62999 -11.49653 -11.41851 -11.24346 -11.19548 -11.09227 -11.04709 -10.75254 -10.53909 -10.42119 -10.37020 -10.20467 -9.71055 -9.30142 -9.19333 -8.98752 -8.51756 -8.41501 -7.97671 -6.44787 -3.93521 1.77448 2.40406 3.14607 3.16332 3.25046 3.27503 3.60272 3.79013 3.88889 4.01347 4.14405 4.16962 4.39529 4.42141 4.53903 4.72683 4.83639 4.91905 4.95774 4.97971 4.99833 5.09400 5.23621 5.28717 5.33616 5.36914 5.45094 5.50471 5.53184 5.59420 5.61950 5.67343 5.77797 5.84280 5.87175 5.93317 5.98749 6.09763 6.12203 6.17243 6.20755 6.41683 6.47189 6.56261 6.58269 6.76707 6.91424 7.00905 7.13032 7.52386 7.97647 8.35178 8.37513 8.77844 9.07123 9.26821 9.82793 10.61588 Molecular weight = 360.20amu Principal moments of inertia in cm(-1) A = 0.010550 B = 0.003764 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.406468 B = 7436.129388 C = 9520.312476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.232 3.768 3 N -0.538 5.538 4 C 0.267 3.733 5 C -0.075 4.075 6 N -0.380 5.380 7 C 0.145 3.855 8 C 0.043 3.957 9 H 0.056 0.944 10 C -0.113 4.113 11 C -0.121 4.121 12 C 0.028 3.972 13 N -0.496 5.496 14 C 0.051 3.949 15 C -0.121 4.121 16 C 0.461 3.539 17 O -0.571 6.571 18 N -0.445 5.445 19 C -0.311 4.311 20 H 0.107 0.893 21 C 0.031 3.969 22 N -0.880 5.880 23 Si 0.925 3.075 24 H -0.271 1.271 25 H -0.286 1.286 26 H -0.274 1.274 27 C 0.222 3.778 28 C 0.248 3.752 29 N -0.477 5.477 30 N -0.295 5.295 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.043 0.957 44 H 0.084 0.916 45 H 0.106 0.894 46 H 0.028 0.972 47 H 0.069 0.931 48 H 0.088 0.912 49 H 0.272 0.728 50 H 0.127 0.873 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.139 0.956 -14.836 21.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.049 4.049 3 N -0.266 5.266 4 C -0.010 4.010 5 C -0.134 4.134 6 N -0.171 5.171 7 C 0.022 3.978 8 C -0.068 4.068 9 H 0.074 0.926 10 C -0.152 4.152 11 C -0.159 4.159 12 C -0.100 4.100 13 N -0.220 5.220 14 C -0.077 4.077 15 C -0.162 4.162 16 C 0.249 3.751 17 O -0.454 6.454 18 N -0.166 5.166 19 C -0.438 4.438 20 H 0.125 0.875 21 C -0.172 4.172 22 N -0.519 5.519 23 Si 0.752 3.248 24 H -0.197 1.197 25 H -0.211 1.211 26 H -0.199 1.199 27 C 0.095 3.905 28 C -0.070 4.070 29 N -0.158 5.158 30 N -0.122 5.122 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.115 0.885 38 H 0.124 0.876 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.061 0.939 44 H 0.102 0.898 45 H 0.124 0.876 46 H 0.047 0.953 47 H 0.087 0.913 48 H 0.107 0.893 49 H 0.083 0.917 50 H 0.144 0.856 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 15.187 0.015 -13.688 20.445 hybrid contribution -0.558 0.923 0.866 1.383 sum 14.629 0.939 -12.822 19.476 Atomic orbital electron populations 1.20066 0.83979 1.04968 1.02582 1.24220 0.98219 0.85446 0.97003 1.70327 0.99683 1.31268 1.25334 1.24245 0.95335 0.83987 0.97402 1.20326 0.91457 0.97712 1.03907 1.50289 1.06077 1.05076 1.55616 1.21787 0.82677 0.96194 0.97163 1.23017 0.92641 0.96565 0.94529 0.92627 1.22249 0.95697 0.97504 0.99759 1.22263 0.96674 0.99920 0.97093 1.23186 0.93862 0.99891 0.93100 1.65329 1.06885 1.27333 1.22492 1.22400 0.90461 0.94619 1.00224 1.21399 0.94955 0.98765 1.01107 1.20106 0.82823 0.88710 0.83442 1.90551 1.80396 1.14624 1.59814 1.43616 1.14237 1.03253 1.55466 1.19650 0.99381 0.95657 1.29074 0.87524 1.25250 1.00482 0.96946 0.94547 1.69856 1.34009 1.21544 1.26483 0.85999 0.81360 0.79182 0.78256 1.19651 1.21110 1.19917 1.18725 1.02199 0.82192 0.87425 1.29522 0.90716 0.92127 0.94685 1.81029 1.13501 1.10534 1.10700 1.78078 0.86186 1.21995 1.25982 0.90592 0.89623 0.89572 0.89440 0.88606 0.90406 0.88539 0.87613 0.90532 0.91039 0.90813 0.91398 0.93906 0.89806 0.87648 0.95326 0.91263 0.89340 0.91697 0.85571 0.89871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.87 10.51 36.00 0.38 -0.49 16 2 C 0.23 4.01 7.61 -156.85 -1.19 2.82 16 3 N -0.54 -9.10 11.19 -8.16 -0.09 -9.19 16 4 C 0.27 3.64 7.85 -155.69 -1.22 2.42 16 5 C -0.07 -0.62 10.01 36.00 0.36 -0.26 16 6 N -0.38 -5.14 2.39 -58.35 -0.14 -5.28 16 7 C 0.14 1.40 5.70 -4.05 -0.02 1.37 16 8 C 0.04 0.45 2.67 -66.06 -0.18 0.27 16 9 H 0.06 0.64 8.00 -51.92 -0.42 0.22 16 10 C -0.11 -0.86 6.55 -25.35 -0.17 -1.03 16 11 C -0.12 -1.09 7.00 -25.34 -0.18 -1.26 16 12 C 0.03 0.35 5.91 -2.18 -0.01 0.33 16 13 N -0.50 -6.85 5.02 -222.11 -1.11 -7.97 16 14 C 0.05 0.91 3.82 -3.83 -0.01 0.90 16 15 C -0.12 -2.31 4.42 -27.88 -0.12 -2.43 16 16 C 0.46 10.77 7.57 -10.98 -0.08 10.68 16 17 O -0.57 -15.23 15.63 5.54 0.09 -15.15 16 18 N -0.44 -10.58 2.60 -117.93 -0.31 -10.89 16 19 C -0.31 -8.08 9.32 -14.93 -0.14 -8.22 16 20 H 0.11 2.93 7.39 -52.49 -0.39 2.55 16 21 C 0.03 0.77 4.87 -17.47 -0.08 0.69 16 22 N -0.88 -22.57 9.48 55.50 0.53 -22.05 16 23 Si 0.93 19.93 29.60 -169.99 -5.03 14.90 16 24 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 25 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 27 C 0.22 4.56 4.91 -6.83 -0.03 4.53 16 28 C 0.25 5.63 12.98 -20.64 -0.27 5.36 16 29 N -0.48 -11.61 18.56 42.29 0.79 -10.83 16 30 N -0.29 -4.90 10.45 32.42 0.34 -4.56 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.08 0.49 7.76 -51.92 -0.40 0.08 16 37 H 0.10 0.58 7.72 -51.93 -0.40 0.17 16 38 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.08 0.49 7.86 -51.93 -0.41 0.08 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.04 0.59 7.75 -51.93 -0.40 0.18 16 44 H 0.08 1.11 7.85 -51.93 -0.41 0.70 16 45 H 0.11 1.99 3.00 -51.93 -0.16 1.84 16 46 H 0.03 0.58 7.72 -51.93 -0.40 0.18 16 47 H 0.07 1.31 6.86 -51.93 -0.36 0.96 16 48 H 0.09 1.57 7.41 -51.93 -0.38 1.18 16 49 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 50 H 0.13 2.63 6.46 -51.92 -0.34 2.30 16 51 H 0.08 1.37 6.67 -51.93 -0.35 1.02 16 LS Contribution 411.96 15.07 6.21 6.21 Total: -1.00 -34.54 411.96 -9.46 -44.00 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -7.74 Total: 5.13 kcal Atomic # 6 Polarization: 18.65 SS G_CDS: -2.98 Total: 15.67 kcal Atomic # 7 Polarization: -70.76 SS G_CDS: 0.00 Total: -70.76 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: 0.09 Total: -15.15 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.03 Total: 14.90 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.54 -9.46 -44.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069521272.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.620 kcal (2) G-P(sol) polarization free energy of solvation -34.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds