Wall clock time and date at job start Tue Mar 31 2020 06:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.33251 * 125.53062 * 2 1 4 4 C 1.30827 * 109.83202 * 179.97438 * 3 2 1 5 5 C 1.50692 * 125.96190 * 179.97438 * 4 3 2 6 6 N 1.34440 * 108.07788 * 0.02562 * 4 3 2 7 7 C 1.46491 * 126.82357 * 179.97438 * 6 4 3 8 8 C 1.52995 * 109.47441 * 89.99726 * 7 6 4 9 9 H 1.09007 * 110.36852 * 302.65022 * 8 7 6 10 10 C 1.54379 * 110.41264 * 180.17382 * 8 7 6 11 11 C 1.54263 * 105.06038 * 217.36485 * 10 8 7 12 12 C 1.54385 * 105.06096 * 0.02562 * 11 10 8 13 13 N 1.48560 * 104.59527 * 23.84843 * 12 11 10 14 14 C 1.46896 * 111.00337 * 200.96527 * 13 12 11 15 15 C 1.52999 * 109.46704 * 285.41883 * 14 13 12 16 16 C 1.50708 * 109.47186 * 179.97438 * 15 14 13 17 17 O 1.21295 * 119.99406 * 359.97438 * 16 15 14 18 18 N 1.34774 * 120.00179 * 179.72311 * 16 15 14 19 19 C 1.37099 * 120.00023 * 180.27625 * 18 16 15 20 20 H 1.08001 * 120.00105 * 17.71640 * 19 18 16 21 21 C 1.38951 * 119.99774 * 197.72018 * 19 18 16 22 22 N 1.31412 * 119.99998 * 21.38800 * 21 19 18 23 23 Si 1.86796 * 119.99871 * 201.38330 * 21 19 18 24 24 H 1.48499 * 109.47162 * 60.00000 * 23 21 19 25 25 H 1.48496 * 109.47213 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47211 * 300.00098 * 23 21 19 27 27 C 1.46500 * 119.99714 * 0.27530 * 18 16 15 28 28 C 1.47201 * 109.47234 * 84.23220 * 27 18 16 29 29 N 7.88365 * 83.99356 * 127.12898 * 2 1 3 30 30 N 1.30714 * 125.52871 * 180.28361 * 2 1 3 31 31 H 1.09005 * 109.47522 * 89.97529 * 1 2 3 32 32 H 1.09000 * 109.47774 * 209.97769 * 1 2 3 33 33 H 1.09006 * 109.47476 * 329.97857 * 1 2 3 34 34 H 1.08997 * 109.47766 * 270.04291 * 5 4 3 35 35 H 1.09000 * 109.47011 * 30.04684 * 5 4 3 36 36 H 1.09008 * 109.47112 * 150.04231 * 5 4 3 37 37 H 1.08999 * 109.47122 * 329.99540 * 7 6 4 38 38 H 1.08996 * 109.47169 * 209.99763 * 7 6 4 39 39 H 1.08990 * 110.32398 * 336.26296 * 10 8 7 40 40 H 1.08994 * 110.32523 * 98.47569 * 10 8 7 41 41 H 1.09006 * 110.32018 * 118.89332 * 11 10 8 42 42 H 1.08996 * 110.33034 * 241.00450 * 11 10 8 43 43 H 1.09005 * 110.40766 * 265.07404 * 12 11 10 44 44 H 1.08996 * 110.41355 * 142.62919 * 12 11 10 45 45 H 1.09002 * 109.47621 * 165.41932 * 14 13 12 46 46 H 1.09001 * 109.47411 * 45.41464 * 14 13 12 47 47 H 1.09001 * 109.47480 * 60.00001 * 15 14 13 48 48 H 1.09001 * 109.47278 * 299.99613 * 15 14 13 49 49 H 0.96997 * 119.99901 * 180.02562 * 22 21 19 50 50 H 1.09007 * 109.47037 * 204.22936 * 27 18 16 51 51 H 1.08998 * 109.47291 * 324.22846 * 27 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2813 1.0844 0.0000 4 6 3.5407 0.7304 0.0006 5 6 4.7227 1.6652 0.0002 6 7 3.5965 -0.6128 0.0003 7 6 4.8046 -1.4414 0.0003 8 6 5.2252 -1.7300 1.4427 9 1 5.3876 -0.7981 1.9843 10 6 6.5007 -2.5995 1.4679 11 6 6.3059 -3.5624 2.6572 12 6 4.9289 -3.1942 3.2502 13 7 4.1963 -2.5553 2.1267 14 6 3.0959 -1.7187 2.6238 15 6 1.9479 -2.6134 3.0954 16 6 0.8192 -1.7552 3.6061 17 8 0.9232 -0.5467 3.5943 18 7 -0.3075 -2.3302 4.0710 19 6 -1.3365 -1.5493 4.5302 20 1 -1.3794 -0.5027 4.2668 21 6 -2.3243 -2.1042 5.3347 22 7 -2.0857 -3.2138 5.9971 23 14 -3.9912 -1.2729 5.4746 24 1 -4.6216 -1.1987 4.1321 25 1 -4.8606 -2.0576 6.3876 26 1 -3.8164 0.0988 6.0159 27 6 -0.4327 -3.7898 4.0855 28 6 0.1943 -4.3239 5.3055 29 7 0.6819 -4.7325 6.2510 30 7 2.2665 -1.0638 -0.0053 31 1 -0.3634 0.0004 -1.0277 32 1 -0.3634 -0.8901 0.5135 33 1 -0.3634 0.8898 0.5142 34 1 5.0075 1.8905 -1.0275 35 1 4.4557 2.5886 0.5140 36 1 5.5599 1.1925 0.5139 37 1 5.6076 -0.9129 -0.5135 38 1 4.6009 -2.3807 -0.5137 39 1 6.5949 -3.1604 0.5381 40 1 7.3807 -1.9761 1.6258 41 1 6.3045 -4.5961 2.3111 42 1 7.0914 -3.4130 3.3980 43 1 5.0460 -2.4922 4.0757 44 1 4.4065 -4.0909 3.5836 45 1 2.7441 -1.0678 1.8234 46 1 3.4491 -1.1113 3.4572 47 1 2.2997 -3.2643 3.8959 48 1 1.5947 -3.2207 2.2621 49 1 -2.7753 -3.6014 6.5584 50 1 -1.4876 -4.0642 4.0692 51 1 0.0646 -4.2059 3.2094 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069521272.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:09 Heat of formation + Delta-G solvation = 87.691646 kcal Electronic energy + Delta-G solvation = -34338.726539 eV Core-core repulsion = 30082.323053 eV Total energy + Delta-G solvation = -4256.403485 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 360.201 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -43.18154 -40.80219 -39.97416 -37.61046 -36.19568 -35.61912 -34.41748 -33.70294 -33.56157 -31.49866 -30.44295 -30.01037 -29.12097 -28.52117 -26.81714 -25.86025 -24.18892 -22.08437 -21.73857 -21.56726 -21.06537 -20.55185 -19.74650 -18.30759 -18.04472 -17.76062 -17.39126 -16.84340 -16.32583 -16.04397 -16.03008 -15.89465 -15.58695 -15.27484 -14.80372 -14.71208 -14.58832 -14.30329 -14.19448 -14.00142 -13.76508 -13.67847 -13.53954 -13.50540 -13.36602 -13.29714 -13.09970 -13.01560 -12.88527 -12.75361 -12.51977 -12.46502 -12.34344 -12.32590 -12.12764 -12.10330 -11.99036 -11.75149 -11.40102 -11.11854 -10.87642 -10.43372 -10.40161 -10.09813 -9.93149 -9.57488 -8.40825 -5.96251 0.71373 1.39908 1.46879 1.49170 1.56059 1.77733 1.98317 2.02241 2.18475 2.33389 2.73540 2.99111 3.22745 3.23223 3.53172 3.54904 3.63197 3.66836 3.89532 3.95322 3.98948 4.05534 4.14659 4.20113 4.25316 4.35766 4.46341 4.51814 4.55202 4.58751 4.67350 4.67787 4.73367 4.78081 4.85090 4.90701 4.92241 4.95021 4.98228 5.01676 5.03737 5.10192 5.22173 5.31601 5.47878 5.50042 5.58244 5.85157 5.92360 6.03201 6.07150 6.39964 6.94236 7.11469 7.25500 7.34137 7.92377 8.63240 Molecular weight = 360.20amu Principal moments of inertia in cm(-1) A = 0.010550 B = 0.003764 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.406468 B = 7436.129388 C = 9520.312476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C 0.209 3.791 3 N -0.578 5.578 4 C 0.265 3.735 5 C -0.073 4.073 6 N -0.377 5.377 7 C 0.138 3.862 8 C 0.038 3.962 9 H 0.046 0.954 10 C -0.101 4.101 11 C -0.115 4.115 12 C 0.021 3.979 13 N -0.498 5.498 14 C 0.064 3.936 15 C -0.106 4.106 16 C 0.454 3.546 17 O -0.612 6.612 18 N -0.454 5.454 19 C -0.337 4.337 20 H 0.081 0.919 21 C 0.005 3.995 22 N -0.894 5.894 23 Si 0.986 3.014 24 H -0.258 1.258 25 H -0.279 1.279 26 H -0.284 1.284 27 C 0.224 3.776 28 C 0.258 3.742 29 N -0.508 5.508 30 N -0.318 5.318 31 H 0.102 0.898 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.117 0.883 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.145 0.855 38 H 0.109 0.891 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.023 0.977 44 H 0.072 0.928 45 H 0.099 0.901 46 H -0.008 1.008 47 H 0.069 0.931 48 H 0.106 0.894 49 H 0.274 0.726 50 H 0.126 0.874 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.359 0.060 -16.719 24.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.072 4.072 3 N -0.308 5.308 4 C -0.011 4.011 5 C -0.132 4.132 6 N -0.168 5.168 7 C 0.017 3.983 8 C -0.071 4.071 9 H 0.064 0.936 10 C -0.140 4.140 11 C -0.153 4.153 12 C -0.107 4.107 13 N -0.222 5.222 14 C -0.065 4.065 15 C -0.146 4.146 16 C 0.244 3.756 17 O -0.497 6.497 18 N -0.174 5.174 19 C -0.465 4.465 20 H 0.099 0.901 21 C -0.196 4.196 22 N -0.533 5.533 23 Si 0.810 3.190 24 H -0.182 1.182 25 H -0.204 1.204 26 H -0.210 1.210 27 C 0.097 3.903 28 C -0.059 4.059 29 N -0.189 5.189 30 N -0.147 5.147 31 H 0.120 0.880 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.135 0.865 35 H 0.109 0.891 36 H 0.122 0.878 37 H 0.162 0.838 38 H 0.127 0.873 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.102 0.898 42 H 0.099 0.901 43 H 0.041 0.959 44 H 0.090 0.910 45 H 0.116 0.884 46 H 0.010 0.990 47 H 0.087 0.913 48 H 0.124 0.876 49 H 0.084 0.916 50 H 0.144 0.856 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 17.438 -0.926 -15.579 23.402 hybrid contribution -1.179 1.215 1.496 2.259 sum 16.259 0.288 -14.083 21.512 Atomic orbital electron populations 1.20020 0.83891 1.03424 1.03810 1.24445 0.98855 0.86031 0.97890 1.70284 1.01370 1.31974 1.27212 1.25152 0.95733 0.84731 0.95440 1.20593 0.90035 0.96484 1.06109 1.50503 1.05926 1.05562 1.54797 1.22235 0.82404 0.96737 0.96908 1.23207 0.93093 0.96379 0.94433 0.93631 1.22280 0.94647 0.97022 1.00035 1.22263 0.94265 1.00891 0.97887 1.23247 0.96112 0.98760 0.92606 1.65329 1.07252 1.27081 1.22537 1.22161 0.91460 0.94343 0.98562 1.21279 0.93831 0.98204 1.01323 1.20845 0.83463 0.88685 0.82626 1.90518 1.81251 1.16664 1.61273 1.43771 1.13989 1.04503 1.55098 1.19547 1.01102 0.95267 1.30543 0.90120 1.25887 1.02769 0.97412 0.93579 1.69937 1.34697 1.22278 1.26409 0.85106 0.77595 0.77557 0.78772 1.18222 1.20363 1.21013 1.19006 1.02694 0.80394 0.88187 1.29920 0.89974 0.91374 0.94665 1.81023 1.14667 1.11575 1.11587 1.77931 0.87808 1.22389 1.26552 0.87972 0.91136 0.90958 0.86462 0.89110 0.87756 0.83769 0.87304 0.88305 0.88391 0.89818 0.90090 0.95897 0.90960 0.88377 0.99013 0.91263 0.87623 0.91570 0.85590 0.85354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.69 10.51 71.23 0.75 -0.95 16 2 C 0.21 7.46 7.61 138.62 1.06 8.52 16 3 N -0.58 -20.01 11.19 -179.73 -2.01 -22.02 16 4 C 0.27 6.99 7.85 138.22 1.08 8.07 16 5 C -0.07 -1.04 10.01 71.23 0.71 -0.32 16 6 N -0.38 -9.73 2.39 -338.53 -0.81 -10.54 16 7 C 0.14 2.22 5.70 86.38 0.49 2.71 16 8 C 0.04 0.71 2.67 45.06 0.12 0.83 16 9 H 0.05 0.96 8.00 -2.38 -0.02 0.94 16 10 C -0.10 -1.10 6.55 31.49 0.21 -0.89 16 11 C -0.11 -1.71 7.00 31.49 0.22 -1.49 16 12 C 0.02 0.51 5.91 86.45 0.51 1.02 16 13 N -0.50 -13.30 5.02 -856.64 -4.30 -17.60 16 14 C 0.06 2.33 3.82 86.30 0.33 2.66 16 15 C -0.11 -4.09 4.42 29.85 0.13 -3.96 16 16 C 0.45 22.02 7.57 87.66 0.66 22.68 16 17 O -0.61 -34.49 15.63 -3.08 -0.05 -34.54 16 18 N -0.45 -22.10 2.60 -645.39 -1.68 -23.78 16 19 C -0.34 -18.11 9.32 84.04 0.78 -17.32 16 20 H 0.08 4.69 7.39 -2.91 -0.02 4.67 16 21 C 0.01 0.27 4.87 84.93 0.41 0.69 16 22 N -0.89 -45.91 9.48 21.66 0.21 -45.70 16 23 Si 0.99 41.14 29.60 68.60 2.03 43.17 16 24 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 25 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 26 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 27 C 0.22 9.14 4.91 84.57 0.42 9.55 16 28 C 0.26 11.73 12.98 89.40 1.16 12.89 16 29 N -0.51 -24.79 18.56 20.05 0.37 -24.42 16 30 N -0.32 -10.64 10.45 -51.34 -0.54 -11.18 16 31 H 0.10 2.62 8.14 -2.38 -0.02 2.60 16 32 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 34 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.10 0.91 7.76 -2.38 -0.02 0.89 16 37 H 0.14 0.95 7.72 -2.39 -0.02 0.93 16 38 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.10 0.70 7.86 -2.39 -0.02 0.69 16 40 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 42 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.02 0.64 7.75 -2.38 -0.02 0.62 16 44 H 0.07 1.90 7.85 -2.39 -0.02 1.88 16 45 H 0.10 3.81 3.00 -2.39 -0.01 3.80 16 46 H -0.01 -0.36 7.72 -2.39 -0.02 -0.38 16 47 H 0.07 2.67 6.86 -2.39 -0.02 2.66 16 48 H 0.11 3.70 7.41 -2.39 -0.02 3.68 16 49 H 0.27 13.59 8.31 -92.71 -0.77 12.82 16 50 H 0.13 5.21 6.46 -2.38 -0.02 5.19 16 51 H 0.13 4.03 6.67 -2.39 -0.02 4.01 16 Total: -1.00 -80.11 411.96 3.23 -76.88 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: 0.95 Total: 25.06 kcal Atomic # 6 Polarization: 35.63 SS G_CDS: 9.05 Total: 44.68 kcal Atomic # 7 Polarization: -146.49 SS G_CDS: -8.76 Total: -155.25 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -0.05 Total: -34.54 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Total: -80.11 3.23 -76.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069521272.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.572 kcal (2) G-P(sol) polarization free energy of solvation -80.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds