Wall clock time and date at job start Tue Mar 31 2020 06:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33251 * 125.52763 * 2 1 4 4 C 1.30835 * 109.82551 * 180.12867 * 3 2 1 5 5 C 1.50702 * 125.95489 * 179.86714 * 4 3 2 6 6 N 1.34429 * 108.07911 * 359.60633 * 4 3 2 7 7 C 1.46499 * 126.81841 * 180.20639 * 6 4 3 8 8 C 1.53001 * 109.46999 * 89.99864 * 7 6 4 9 9 H 1.09005 * 110.33568 * 57.25485 * 8 7 6 10 10 C 1.54907 * 110.37150 * 179.62103 * 8 7 6 11 11 C 1.55142 * 101.65259 * 155.89941 * 10 8 7 12 12 C 1.54316 * 103.01941 * 324.34742 * 11 10 8 13 13 N 1.47444 * 107.23300 * 22.28226 * 12 11 10 14 14 C 1.46903 * 111.00119 * 123.25774 * 13 12 11 15 15 C 1.52993 * 109.47313 * 54.93703 * 14 13 12 16 16 C 1.50698 * 109.47580 * 174.57090 * 15 14 13 17 17 O 1.21289 * 119.99599 * 0.02562 * 16 15 14 18 18 N 1.34776 * 120.00276 * 180.02562 * 16 15 14 19 19 C 1.37098 * 119.99953 * 180.02562 * 18 16 15 20 20 H 1.08002 * 120.00158 * 18.55123 * 19 18 16 21 21 C 1.38956 * 119.99724 * 198.56137 * 19 18 16 22 22 N 1.31405 * 119.99973 * 16.81660 * 21 19 18 23 23 Si 1.86794 * 119.99749 * 196.82042 * 21 19 18 24 24 H 1.48503 * 109.47475 * 59.99821 * 23 21 19 25 25 H 1.48501 * 109.47427 * 179.97438 * 23 21 19 26 26 H 1.48506 * 109.47341 * 299.99828 * 23 21 19 27 27 C 1.46503 * 119.99964 * 359.97438 * 18 16 15 28 28 C 1.47197 * 109.46890 * 84.86573 * 27 18 16 29 29 N 7.50055 * 125.36269 * 31.13456 * 2 1 3 30 30 N 1.30714 * 125.52944 * 179.68378 * 2 1 3 31 31 H 1.09000 * 109.46656 * 270.31714 * 1 2 3 32 32 H 1.09002 * 109.46908 * 30.31401 * 1 2 3 33 33 H 1.08996 * 109.47265 * 150.31946 * 1 2 3 34 34 H 1.09003 * 109.47117 * 269.68721 * 5 4 3 35 35 H 1.08990 * 109.47104 * 29.69232 * 5 4 3 36 36 H 1.09005 * 109.46906 * 149.69351 * 5 4 3 37 37 H 1.09002 * 109.46545 * 209.99491 * 7 6 4 38 38 H 1.08990 * 109.47565 * 329.99812 * 7 6 4 39 39 H 1.08998 * 110.99166 * 273.99004 * 10 8 7 40 40 H 1.09000 * 110.99361 * 37.81176 * 10 8 7 41 41 H 1.09002 * 110.70469 * 205.96380 * 11 10 8 42 42 H 1.08995 * 110.85511 * 82.79988 * 11 10 8 43 43 H 1.08997 * 109.88836 * 262.87913 * 12 11 10 44 44 H 1.09000 * 109.88910 * 141.68684 * 12 11 10 45 45 H 1.09002 * 109.47398 * 174.94307 * 14 13 12 46 46 H 1.09010 * 109.46882 * 294.94050 * 14 13 12 47 47 H 1.09006 * 109.47310 * 294.57571 * 15 14 13 48 48 H 1.09003 * 109.47033 * 54.56662 * 15 14 13 49 49 H 0.96999 * 120.00261 * 180.02562 * 22 21 19 50 50 H 1.08998 * 109.46696 * 204.86312 * 27 18 16 51 51 H 1.09003 * 109.47152 * 324.86355 * 27 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2813 1.0844 0.0000 4 6 3.5408 0.7304 -0.0028 5 6 4.7228 1.6653 -0.0065 6 7 3.5966 -0.6128 0.0042 7 6 4.8048 -1.4413 0.0083 8 6 5.2255 -1.7222 1.4523 9 1 4.4136 -2.2050 1.9963 10 6 6.4974 -2.6059 1.4811 11 6 7.0928 -2.2531 2.8696 12 6 6.7593 -0.7539 3.0201 13 7 5.6222 -0.4675 2.1262 14 6 4.4960 0.1068 2.8745 15 6 4.9705 1.3427 3.6413 16 6 3.7905 2.0085 4.3010 17 8 2.6792 1.5402 4.1710 18 7 3.9699 3.1243 5.0354 19 6 2.8963 3.7296 5.6360 20 1 1.9782 3.1798 5.7818 21 6 2.9894 5.0506 6.0569 22 7 3.9530 5.8190 5.6011 23 14 1.7448 5.7340 7.2706 24 1 1.8011 4.9510 8.5312 25 1 2.0622 7.1561 7.5572 26 1 0.3818 5.6380 6.6888 27 6 5.3122 3.6896 5.1929 28 6 5.6147 4.5619 4.0465 29 7 5.8479 5.2357 3.1627 30 7 2.2666 -1.0638 0.0059 31 1 -0.3633 0.0057 1.0277 32 1 -0.3633 0.8872 -0.5187 33 1 -0.3633 -0.8928 -0.5088 34 1 5.0087 1.8853 -1.0351 35 1 4.4552 2.5912 0.5023 36 1 5.5594 1.1952 0.5105 37 1 4.6009 -2.3834 -0.5006 38 1 5.6077 -0.9156 -0.5083 39 1 6.2395 -3.6634 1.4242 40 1 7.1834 -2.3293 0.6805 41 1 8.1713 -2.4107 2.8779 42 1 6.6136 -2.8353 3.6566 43 1 7.6200 -0.1516 2.7296 44 1 6.4834 -0.5371 4.0520 45 1 3.7056 0.3914 2.1799 46 1 4.1126 -0.6323 3.5781 47 1 5.6913 1.0436 4.4024 48 1 5.4416 2.0409 2.9494 49 1 4.0183 6.7410 5.8952 50 1 5.3556 4.2714 6.1136 51 1 6.0434 2.8824 5.2383 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069521276.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:16 Heat of formation + Delta-G solvation = 102.368887 kcal Electronic energy + Delta-G solvation = -34303.160852 eV Core-core repulsion = 30047.393820 eV Total energy + Delta-G solvation = -4255.767032 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 360.201 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.94814 -39.61652 -38.63181 -35.80493 -34.56590 -34.34381 -33.37788 -32.32321 -31.79641 -30.58426 -29.13313 -28.89442 -27.48404 -27.37479 -25.35731 -24.78781 -22.92676 -21.23351 -20.81535 -20.39082 -19.83947 -18.78646 -17.86788 -17.02180 -16.72751 -16.47024 -16.26671 -15.59585 -15.10802 -14.76189 -14.47624 -14.27781 -14.20048 -14.08804 -13.54106 -13.42249 -13.24025 -13.07198 -12.96315 -12.86800 -12.71060 -12.44279 -12.29791 -12.24986 -11.99118 -11.89113 -11.73919 -11.63381 -11.51873 -11.32586 -11.30751 -11.19199 -11.17521 -11.04329 -10.87041 -10.74517 -10.51026 -10.40866 -10.24817 -9.62976 -9.40834 -9.23581 -9.04891 -8.57746 -8.37600 -8.01526 -6.46194 -3.98868 1.85394 2.48275 3.14429 3.21499 3.23085 3.25224 3.56609 3.69091 3.85462 4.03092 4.15643 4.32584 4.33543 4.38805 4.57997 4.71189 4.88243 4.93952 4.94757 4.96538 5.05310 5.18976 5.23488 5.25058 5.32457 5.38789 5.42438 5.50854 5.59444 5.62270 5.63390 5.64775 5.69736 5.75108 5.82257 5.89608 5.94281 5.99445 6.10881 6.14989 6.17072 6.27035 6.33982 6.56841 6.61589 6.75901 6.88121 6.99025 7.10069 7.49045 7.92461 8.31021 8.45772 8.79115 9.03142 9.21940 9.76234 10.59464 Molecular weight = 360.20amu Principal moments of inertia in cm(-1) A = 0.009969 B = 0.003620 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.061670 B = 7733.785458 C = 9051.437222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.225 3.775 3 N -0.540 5.540 4 C 0.302 3.698 5 C -0.088 4.088 6 N -0.380 5.380 7 C 0.147 3.853 8 C 0.053 3.947 9 H 0.066 0.934 10 C -0.118 4.118 11 C -0.140 4.140 12 C 0.036 3.964 13 N -0.527 5.527 14 C 0.068 3.932 15 C -0.134 4.134 16 C 0.458 3.542 17 O -0.570 6.570 18 N -0.444 5.444 19 C -0.309 4.309 20 H 0.106 0.894 21 C 0.031 3.969 22 N -0.884 5.884 23 Si 0.930 3.070 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.273 1.273 27 C 0.223 3.777 28 C 0.248 3.752 29 N -0.474 5.474 30 N -0.332 5.332 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.081 0.919 44 H 0.063 0.937 45 H 0.087 0.913 46 H 0.036 0.964 47 H 0.080 0.920 48 H 0.087 0.913 49 H 0.273 0.727 50 H 0.129 0.871 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.615 -15.339 -6.673 18.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.057 4.057 3 N -0.268 5.268 4 C 0.026 3.974 5 C -0.147 4.147 6 N -0.170 5.170 7 C 0.024 3.976 8 C -0.056 4.056 9 H 0.084 0.916 10 C -0.157 4.157 11 C -0.178 4.178 12 C -0.091 4.091 13 N -0.252 5.252 14 C -0.060 4.060 15 C -0.174 4.174 16 C 0.246 3.754 17 O -0.452 6.452 18 N -0.165 5.165 19 C -0.436 4.436 20 H 0.124 0.876 21 C -0.172 4.172 22 N -0.523 5.523 23 Si 0.756 3.244 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.198 1.198 27 C 0.095 3.905 28 C -0.070 4.070 29 N -0.154 5.154 30 N -0.161 5.161 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.124 0.876 37 H 0.115 0.885 38 H 0.119 0.881 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.100 0.900 44 H 0.081 0.919 45 H 0.106 0.894 46 H 0.054 0.946 47 H 0.098 0.902 48 H 0.105 0.895 49 H 0.084 0.916 50 H 0.147 0.853 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.245 -14.439 -8.362 18.612 hybrid contribution -0.666 -0.101 1.693 1.822 sum 7.579 -14.540 -6.670 17.701 Atomic orbital electron populations 1.20052 0.84442 1.03319 1.03823 1.24155 0.98067 0.85892 0.97552 1.70448 0.99998 1.30672 1.25704 1.24224 0.95020 0.83643 0.94471 1.20611 0.92631 0.97896 1.03588 1.50217 1.05403 1.05553 1.55854 1.21767 0.83052 0.95679 0.97113 1.22998 0.97717 0.90422 0.94481 0.91595 1.22658 0.95705 0.99120 0.98198 1.22759 1.01481 0.96688 0.96882 1.22924 0.94499 0.95156 0.96568 1.63568 1.07476 1.24735 1.29392 1.22104 0.92288 0.95119 0.96476 1.21665 0.98246 0.97745 0.99776 1.20028 0.89765 0.84069 0.81547 1.90569 1.26025 1.65820 1.62807 1.43601 1.05842 1.22817 1.44255 1.19669 0.94546 0.95108 1.34241 0.87646 1.25265 0.98202 0.95336 0.98366 1.69766 1.33564 1.07619 1.41389 0.85931 0.80529 0.77518 0.80406 1.19817 1.20978 1.19823 1.18729 0.85034 0.93002 0.93703 1.29234 0.91442 0.92877 0.93450 1.80871 1.10631 1.10781 1.13089 1.77894 0.86883 1.22642 1.28665 0.89775 0.89834 0.90543 0.90135 0.88857 0.87608 0.88549 0.88057 0.90559 0.90140 0.90510 0.91459 0.90034 0.91872 0.89446 0.94558 0.90199 0.89489 0.91599 0.85348 0.90351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.78 10.51 36.00 0.38 -0.40 16 2 C 0.23 3.97 8.14 -156.85 -1.28 2.69 16 3 N -0.54 -10.39 11.19 -8.16 -0.09 -10.49 16 4 C 0.30 4.97 5.28 -155.69 -0.82 4.15 16 5 C -0.09 -1.22 9.53 36.01 0.34 -0.88 16 6 N -0.38 -5.62 3.03 -58.34 -0.18 -5.80 16 7 C 0.15 1.52 5.82 -4.04 -0.02 1.50 16 8 C 0.05 0.56 2.75 -66.19 -0.18 0.37 16 9 H 0.07 0.85 7.71 -51.93 -0.40 0.45 16 10 C -0.12 -0.84 6.49 -24.59 -0.16 -1.00 16 11 C -0.14 -1.05 6.94 -24.91 -0.17 -1.22 16 12 C 0.04 0.35 6.19 -2.84 -0.02 0.33 16 13 N -0.53 -6.19 3.01 -223.38 -0.67 -6.87 16 14 C 0.07 1.10 3.37 -3.83 -0.01 1.09 16 15 C -0.13 -2.26 3.96 -27.89 -0.11 -2.37 16 16 C 0.46 10.38 7.57 -10.99 -0.08 10.30 16 17 O -0.57 -15.22 15.57 5.55 0.09 -15.14 16 18 N -0.44 -10.34 2.60 -117.93 -0.31 -10.64 16 19 C -0.31 -8.00 9.34 -14.93 -0.14 -8.14 16 20 H 0.11 2.91 7.37 -52.49 -0.39 2.52 16 21 C 0.03 0.77 4.98 -17.47 -0.09 0.69 16 22 N -0.88 -22.27 9.20 55.50 0.51 -21.75 16 23 Si 0.93 19.96 29.58 -169.99 -5.03 14.94 16 24 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 25 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 26 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 27 C 0.22 4.36 4.91 -6.83 -0.03 4.33 16 28 C 0.25 5.39 12.94 -20.78 -0.27 5.12 16 29 N -0.47 -11.04 18.53 42.14 0.78 -10.26 16 30 N -0.33 -5.62 12.70 32.42 0.41 -5.21 16 31 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 36 H 0.11 1.32 5.84 -51.93 -0.30 1.01 16 37 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.10 0.85 7.72 -51.93 -0.40 0.45 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.48 8.06 -51.93 -0.42 0.06 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.65 6.00 -51.93 -0.31 0.34 16 45 H 0.09 1.70 4.61 -51.93 -0.24 1.47 16 46 H 0.04 0.64 7.99 -51.92 -0.41 0.23 16 47 H 0.08 1.12 5.67 -51.93 -0.29 0.82 16 48 H 0.09 1.47 7.56 -51.93 -0.39 1.07 16 49 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 50 H 0.13 2.59 6.42 -51.93 -0.33 2.26 16 51 H 0.08 1.16 6.65 -51.93 -0.35 0.81 16 LS Contribution 406.79 15.07 6.13 6.13 Total: -1.00 -34.30 406.79 -8.63 -42.93 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -7.60 Total: 5.60 kcal Atomic # 6 Polarization: 19.22 SS G_CDS: -2.67 Total: 16.56 kcal Atomic # 7 Polarization: -71.47 SS G_CDS: 0.46 Total: -71.01 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: 0.09 Total: -15.14 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.03 Total: 14.94 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.30 -8.63 -42.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069521276.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.296 kcal (2) G-P(sol) polarization free energy of solvation -34.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds