Wall clock time and date at job start Tue Mar 31 2020 06:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33251 * 125.52763 * 2 1 4 4 C 1.30835 * 109.82551 * 180.12867 * 3 2 1 5 5 C 1.50702 * 125.95489 * 179.86714 * 4 3 2 6 6 N 1.34429 * 108.07911 * 359.60633 * 4 3 2 7 7 C 1.46499 * 126.81841 * 180.20639 * 6 4 3 8 8 C 1.53001 * 109.46999 * 89.99864 * 7 6 4 9 9 H 1.09005 * 110.33568 * 57.25485 * 8 7 6 10 10 C 1.54907 * 110.37150 * 179.62103 * 8 7 6 11 11 C 1.55142 * 101.65259 * 155.89941 * 10 8 7 12 12 C 1.54316 * 103.01941 * 324.34742 * 11 10 8 13 13 N 1.47444 * 107.23300 * 22.28226 * 12 11 10 14 14 C 1.46903 * 111.00119 * 123.25774 * 13 12 11 15 15 C 1.52993 * 109.47313 * 54.93703 * 14 13 12 16 16 C 1.50698 * 109.47580 * 174.57090 * 15 14 13 17 17 O 1.21289 * 119.99599 * 0.02562 * 16 15 14 18 18 N 1.34776 * 120.00276 * 180.02562 * 16 15 14 19 19 C 1.37098 * 119.99953 * 180.02562 * 18 16 15 20 20 H 1.08002 * 120.00158 * 18.55123 * 19 18 16 21 21 C 1.38956 * 119.99724 * 198.56137 * 19 18 16 22 22 N 1.31405 * 119.99973 * 16.81660 * 21 19 18 23 23 Si 1.86794 * 119.99749 * 196.82042 * 21 19 18 24 24 H 1.48503 * 109.47475 * 59.99821 * 23 21 19 25 25 H 1.48501 * 109.47427 * 179.97438 * 23 21 19 26 26 H 1.48506 * 109.47341 * 299.99828 * 23 21 19 27 27 C 1.46503 * 119.99964 * 359.97438 * 18 16 15 28 28 C 1.47197 * 109.46890 * 84.86573 * 27 18 16 29 29 N 7.50055 * 125.36269 * 31.13456 * 2 1 3 30 30 N 1.30714 * 125.52944 * 179.68378 * 2 1 3 31 31 H 1.09000 * 109.46656 * 270.31714 * 1 2 3 32 32 H 1.09002 * 109.46908 * 30.31401 * 1 2 3 33 33 H 1.08996 * 109.47265 * 150.31946 * 1 2 3 34 34 H 1.09003 * 109.47117 * 269.68721 * 5 4 3 35 35 H 1.08990 * 109.47104 * 29.69232 * 5 4 3 36 36 H 1.09005 * 109.46906 * 149.69351 * 5 4 3 37 37 H 1.09002 * 109.46545 * 209.99491 * 7 6 4 38 38 H 1.08990 * 109.47565 * 329.99812 * 7 6 4 39 39 H 1.08998 * 110.99166 * 273.99004 * 10 8 7 40 40 H 1.09000 * 110.99361 * 37.81176 * 10 8 7 41 41 H 1.09002 * 110.70469 * 205.96380 * 11 10 8 42 42 H 1.08995 * 110.85511 * 82.79988 * 11 10 8 43 43 H 1.08997 * 109.88836 * 262.87913 * 12 11 10 44 44 H 1.09000 * 109.88910 * 141.68684 * 12 11 10 45 45 H 1.09002 * 109.47398 * 174.94307 * 14 13 12 46 46 H 1.09010 * 109.46882 * 294.94050 * 14 13 12 47 47 H 1.09006 * 109.47310 * 294.57571 * 15 14 13 48 48 H 1.09003 * 109.47033 * 54.56662 * 15 14 13 49 49 H 0.96999 * 120.00261 * 180.02562 * 22 21 19 50 50 H 1.08998 * 109.46696 * 204.86312 * 27 18 16 51 51 H 1.09003 * 109.47152 * 324.86355 * 27 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2813 1.0844 0.0000 4 6 3.5408 0.7304 -0.0028 5 6 4.7228 1.6653 -0.0065 6 7 3.5966 -0.6128 0.0042 7 6 4.8048 -1.4413 0.0083 8 6 5.2255 -1.7222 1.4523 9 1 4.4136 -2.2050 1.9963 10 6 6.4974 -2.6059 1.4811 11 6 7.0928 -2.2531 2.8696 12 6 6.7593 -0.7539 3.0201 13 7 5.6222 -0.4675 2.1262 14 6 4.4960 0.1068 2.8745 15 6 4.9705 1.3427 3.6413 16 6 3.7905 2.0085 4.3010 17 8 2.6792 1.5402 4.1710 18 7 3.9699 3.1243 5.0354 19 6 2.8963 3.7296 5.6360 20 1 1.9782 3.1798 5.7818 21 6 2.9894 5.0506 6.0569 22 7 3.9530 5.8190 5.6011 23 14 1.7448 5.7340 7.2706 24 1 1.8011 4.9510 8.5312 25 1 2.0622 7.1561 7.5572 26 1 0.3818 5.6380 6.6888 27 6 5.3122 3.6896 5.1929 28 6 5.6147 4.5619 4.0465 29 7 5.8479 5.2357 3.1627 30 7 2.2666 -1.0638 0.0059 31 1 -0.3633 0.0057 1.0277 32 1 -0.3633 0.8872 -0.5187 33 1 -0.3633 -0.8928 -0.5088 34 1 5.0087 1.8853 -1.0351 35 1 4.4552 2.5912 0.5023 36 1 5.5594 1.1952 0.5105 37 1 4.6009 -2.3834 -0.5006 38 1 5.6077 -0.9156 -0.5083 39 1 6.2395 -3.6634 1.4242 40 1 7.1834 -2.3293 0.6805 41 1 8.1713 -2.4107 2.8779 42 1 6.6136 -2.8353 3.6566 43 1 7.6200 -0.1516 2.7296 44 1 6.4834 -0.5371 4.0520 45 1 3.7056 0.3914 2.1799 46 1 4.1126 -0.6323 3.5781 47 1 5.6913 1.0436 4.4024 48 1 5.4416 2.0409 2.9494 49 1 4.0183 6.7410 5.8952 50 1 5.3556 4.2714 6.1136 51 1 6.0434 2.8824 5.2383 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069521276.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:15 Heat of formation + Delta-G solvation = 80.713230 kcal Electronic energy + Delta-G solvation = -34304.099912 eV Core-core repulsion = 30047.393820 eV Total energy + Delta-G solvation = -4256.706092 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 360.201 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.15622 -40.90120 -40.01822 -37.60873 -36.17957 -35.62111 -34.57923 -33.72382 -33.42894 -31.55194 -30.33258 -30.04608 -29.07304 -28.53153 -26.81549 -26.03836 -24.18216 -22.07982 -21.94552 -21.60495 -20.89968 -20.33183 -19.71862 -18.37481 -18.12922 -17.78123 -17.52115 -16.93582 -16.29447 -16.22332 -15.96185 -15.83389 -15.38675 -15.08428 -14.73349 -14.71505 -14.59868 -14.51241 -14.25913 -14.13501 -13.81920 -13.67068 -13.53124 -13.40686 -13.33317 -13.29786 -13.11635 -12.96809 -12.90307 -12.67422 -12.51803 -12.46891 -12.33262 -12.23397 -12.13829 -12.10445 -12.03126 -11.74791 -11.52256 -11.12082 -10.93604 -10.64679 -10.44855 -10.21410 -9.92346 -9.37720 -8.39133 -5.98213 0.63190 1.39377 1.43846 1.45345 1.54109 1.82885 1.92758 2.07663 2.30127 2.36573 2.69817 3.01778 3.18982 3.24159 3.50560 3.61900 3.63123 3.67085 3.90974 3.93393 3.98420 4.07431 4.16460 4.17732 4.20588 4.34191 4.43200 4.51104 4.56768 4.61582 4.65926 4.69066 4.71511 4.77046 4.83040 4.94176 4.94637 4.95934 5.01219 5.07007 5.08459 5.09745 5.19626 5.41710 5.43744 5.46584 5.53942 5.91000 5.93848 6.00564 6.05646 6.40597 7.06406 7.12359 7.20716 7.35046 7.92444 8.63466 Molecular weight = 360.20amu Principal moments of inertia in cm(-1) A = 0.009969 B = 0.003620 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.061670 B = 7733.785458 C = 9051.437222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.204 3.796 3 N -0.589 5.589 4 C 0.294 3.706 5 C -0.080 4.080 6 N -0.371 5.371 7 C 0.137 3.863 8 C 0.053 3.947 9 H 0.034 0.966 10 C -0.105 4.105 11 C -0.134 4.134 12 C 0.028 3.972 13 N -0.520 5.520 14 C 0.085 3.915 15 C -0.117 4.117 16 C 0.448 3.552 17 O -0.621 6.621 18 N -0.455 5.455 19 C -0.338 4.338 20 H 0.076 0.924 21 C 0.007 3.993 22 N -0.894 5.894 23 Si 0.985 3.015 24 H -0.260 1.260 25 H -0.276 1.276 26 H -0.287 1.287 27 C 0.223 3.777 28 C 0.259 3.741 29 N -0.504 5.504 30 N -0.347 5.347 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.062 0.938 36 H 0.122 0.878 37 H 0.115 0.885 38 H 0.130 0.870 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.101 0.899 42 H 0.059 0.941 43 H 0.101 0.899 44 H 0.055 0.945 45 H 0.053 0.947 46 H 0.010 0.990 47 H 0.118 0.882 48 H 0.094 0.906 49 H 0.275 0.725 50 H 0.125 0.875 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.824 -16.583 -6.860 21.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.078 4.078 3 N -0.319 5.319 4 C 0.019 3.981 5 C -0.139 4.139 6 N -0.162 5.162 7 C 0.016 3.984 8 C -0.057 4.057 9 H 0.053 0.947 10 C -0.144 4.144 11 C -0.173 4.173 12 C -0.098 4.098 13 N -0.244 5.244 14 C -0.044 4.044 15 C -0.157 4.157 16 C 0.238 3.762 17 O -0.507 6.507 18 N -0.175 5.175 19 C -0.465 4.465 20 H 0.093 0.907 21 C -0.195 4.195 22 N -0.533 5.533 23 Si 0.810 3.190 24 H -0.185 1.185 25 H -0.200 1.200 26 H -0.213 1.213 27 C 0.097 3.903 28 C -0.059 4.059 29 N -0.185 5.185 30 N -0.177 5.177 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.119 0.881 34 H 0.126 0.874 35 H 0.081 0.919 36 H 0.140 0.860 37 H 0.134 0.866 38 H 0.148 0.852 39 H 0.108 0.892 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.077 0.923 43 H 0.120 0.880 44 H 0.073 0.927 45 H 0.071 0.929 46 H 0.028 0.972 47 H 0.136 0.864 48 H 0.112 0.888 49 H 0.085 0.915 50 H 0.143 0.857 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 11.519 -15.698 -8.542 21.263 hybrid contribution -1.648 0.249 1.752 2.418 sum 9.871 -15.449 -6.791 19.551 Atomic orbital electron populations 1.20149 0.82709 1.04824 1.03709 1.24753 0.99490 0.85738 0.97848 1.70391 1.01706 1.32306 1.27535 1.24561 0.94923 0.84664 0.93933 1.20644 0.92008 0.96043 1.05157 1.50435 1.05714 1.05486 1.54527 1.22255 0.82065 0.96454 0.97656 1.23046 0.98643 0.90252 0.93733 0.94732 1.22672 0.93843 0.99085 0.98762 1.22747 1.02955 0.94767 0.96793 1.23099 0.93829 0.97263 0.95658 1.63584 1.06206 1.25647 1.28984 1.21747 0.93081 0.94345 0.95249 1.21579 0.96224 0.97546 1.00399 1.21028 0.90770 0.83661 0.80722 1.90538 1.28625 1.67135 1.64373 1.43776 1.06697 1.22902 1.44106 1.19529 0.94975 0.95793 1.36238 0.90655 1.25841 0.99676 0.94976 0.99034 1.69851 1.34290 1.07652 1.41493 0.85110 0.77728 0.77321 0.78878 1.18504 1.20043 1.21291 1.19058 0.84374 0.94354 0.92535 1.29633 0.90557 0.92395 0.93310 1.80873 1.11699 1.11790 1.14113 1.77780 0.88033 1.22919 1.28939 0.90548 0.89253 0.88117 0.87370 0.91867 0.85956 0.86647 0.85235 0.89187 0.87763 0.88030 0.92265 0.88049 0.92698 0.92894 0.97168 0.86439 0.88815 0.91521 0.85727 0.84727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.57 10.51 71.23 0.75 -0.83 16 2 C 0.20 7.50 8.14 138.63 1.13 8.63 16 3 N -0.59 -23.78 11.19 -179.72 -2.01 -25.79 16 4 C 0.29 9.83 5.28 138.23 0.73 10.56 16 5 C -0.08 -2.15 9.53 71.24 0.68 -1.47 16 6 N -0.37 -10.91 3.03 -338.49 -1.02 -11.93 16 7 C 0.14 2.53 5.82 86.38 0.50 3.03 16 8 C 0.05 1.00 2.75 45.39 0.12 1.12 16 9 H 0.03 0.89 7.71 -2.38 -0.02 0.87 16 10 C -0.11 -1.07 6.49 31.98 0.21 -0.86 16 11 C -0.13 -1.49 6.94 31.77 0.22 -1.27 16 12 C 0.03 0.45 6.19 86.65 0.54 0.98 16 13 N -0.52 -11.18 3.01 -860.65 -2.59 -13.77 16 14 C 0.08 2.76 3.37 86.30 0.29 3.05 16 15 C -0.12 -3.86 3.96 29.85 0.12 -3.74 16 16 C 0.45 20.76 7.57 87.66 0.66 21.42 16 17 O -0.62 -35.01 15.57 -3.06 -0.05 -35.06 16 18 N -0.45 -21.34 2.60 -645.41 -1.68 -23.02 16 19 C -0.34 -18.02 9.34 84.04 0.78 -17.23 16 20 H 0.08 4.40 7.37 -2.91 -0.02 4.38 16 21 C 0.01 0.32 4.98 84.93 0.42 0.75 16 22 N -0.89 -44.76 9.20 21.66 0.20 -44.56 16 23 Si 0.99 41.18 29.58 68.60 2.03 43.21 16 24 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 25 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 26 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 27 C 0.22 8.40 4.91 84.57 0.42 8.82 16 28 C 0.26 10.96 12.94 89.45 1.16 12.12 16 29 N -0.50 -23.16 18.53 20.00 0.37 -22.79 16 30 N -0.35 -12.04 12.70 -51.33 -0.65 -12.69 16 31 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.09 2.38 8.14 -2.39 -0.02 2.37 16 33 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.12 2.80 5.84 -2.38 -0.01 2.79 16 37 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.13 1.69 7.72 -2.39 -0.02 1.67 16 39 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.10 0.65 8.06 -2.39 -0.02 0.63 16 41 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 43 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.05 0.97 6.00 -2.39 -0.01 0.96 16 45 H 0.05 2.14 4.61 -2.39 -0.01 2.13 16 46 H 0.01 0.37 7.99 -2.38 -0.02 0.35 16 47 H 0.12 2.96 5.67 -2.38 -0.01 2.94 16 48 H 0.09 3.01 7.56 -2.39 -0.02 2.99 16 49 H 0.27 13.33 8.31 -92.71 -0.77 12.56 16 50 H 0.13 4.87 6.42 -2.39 -0.02 4.85 16 51 H 0.14 3.50 6.65 -2.39 -0.02 3.49 16 Total: -1.00 -80.52 406.79 4.29 -76.23 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: 0.96 Total: 25.08 kcal Atomic # 6 Polarization: 36.36 SS G_CDS: 8.73 Total: 45.09 kcal Atomic # 7 Polarization: -147.17 SS G_CDS: -7.38 Total: -154.55 kcal Atomic # 8 Polarization: -35.01 SS G_CDS: -0.05 Total: -35.06 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Total: -80.52 4.29 -76.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069521276.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.945 kcal (2) G-P(sol) polarization free energy of solvation -80.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds