Wall clock time and date at job start Tue Mar 31 2020 05:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30921 * 126.48449 * 2 1 4 4 N 1.28981 * 109.75369 * 179.97438 * 3 2 1 5 5 C 1.29636 * 109.47705 * 359.95534 * 4 3 2 6 6 N 1.34413 * 126.48399 * 180.02562 * 2 1 3 7 7 C 1.46316 * 129.75606 * 0.20996 * 6 2 1 8 8 C 1.53467 * 108.17366 * 163.61603 * 7 6 2 9 9 N 1.46966 * 109.74070 * 49.61263 * 8 7 6 10 10 C 1.46901 * 110.99901 * 165.13335 * 9 8 7 11 11 C 1.50701 * 109.47362 * 58.23193 * 10 9 8 12 12 O 1.21279 * 119.99962 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00163 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99871 * 180.02562 * 13 11 10 15 15 C 1.50698 * 109.47218 * 89.99872 * 14 13 11 16 16 H 1.07995 * 120.00235 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99648 * 179.97438 * 15 14 13 18 18 N 1.31508 * 119.99974 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99695 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46887 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47060 * 119.99762 * 19 17 15 22 22 H 1.48501 * 109.46826 * 239.99943 * 19 17 15 23 23 C 1.46502 * 119.99745 * 359.97438 * 13 11 10 24 24 C 1.50701 * 109.46649 * 90.00044 * 23 13 11 25 25 C 1.34520 * 125.78719 * 90.00412 * 24 23 13 26 26 C 1.41378 * 106.84084 * 179.97438 * 25 24 23 27 27 C 1.34517 * 106.83923 * 359.97438 * 26 25 24 28 28 O 1.34296 * 125.79391 * 269.69057 * 24 23 13 29 29 C 1.47386 * 111.25143 * 289.26757 * 9 8 7 30 30 H 1.09002 * 109.47099 * 269.97639 * 1 2 3 31 31 H 1.09002 * 109.46777 * 29.97150 * 1 2 3 32 32 H 1.08997 * 109.47054 * 149.96836 * 1 2 3 33 33 H 1.09001 * 109.71824 * 43.95001 * 7 6 2 34 34 H 1.08993 * 109.75898 * 283.30541 * 7 6 2 35 35 H 1.09003 * 109.42569 * 289.52890 * 8 7 6 36 36 H 1.09001 * 109.38069 * 169.66581 * 8 7 6 37 37 H 1.09003 * 109.47174 * 178.22906 * 10 9 8 38 38 H 1.08995 * 109.47197 * 298.23216 * 10 9 8 39 39 H 1.08999 * 109.46432 * 209.99990 * 14 13 11 40 40 H 1.08998 * 109.46984 * 329.99553 * 14 13 11 41 41 H 0.97003 * 119.99588 * 179.97438 * 18 17 15 42 42 H 1.09000 * 109.46836 * 209.99790 * 23 13 11 43 43 H 1.08995 * 109.47156 * 330.00196 * 23 13 11 44 44 H 1.08005 * 126.58119 * 0.02562 * 25 24 23 45 45 H 1.07999 * 126.58305 * 179.97438 * 26 25 24 46 46 H 1.08006 * 125.78967 * 180.02562 * 27 26 25 47 47 H 1.09004 * 109.75687 * 169.70951 * 29 9 8 48 48 H 1.09002 * 109.75539 * 290.44522 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2855 1.0526 0.0000 4 7 3.5207 0.6813 0.0005 5 6 3.5828 -0.6135 0.0019 6 7 2.3063 -1.0807 -0.0005 7 6 1.9583 -2.5019 -0.0052 8 6 3.2044 -3.2985 -0.4150 9 7 4.3564 -2.8659 0.3885 10 6 5.4630 -3.8262 0.2817 11 6 5.8644 -3.9715 -1.1636 12 8 5.2853 -3.3379 -2.0204 13 7 6.8661 -4.8063 -1.5041 14 6 7.2566 -4.9471 -2.9091 15 6 8.3252 -3.9364 -3.2372 16 1 8.6779 -3.2569 -2.4755 17 6 8.8526 -3.8794 -4.5099 18 7 8.4235 -4.7072 -5.4372 19 14 10.1777 -2.6270 -4.9164 20 1 10.4833 -1.8198 -3.7079 21 1 11.4051 -3.3328 -5.3643 22 1 9.6976 -1.7325 -6.0002 23 6 7.5653 -5.5721 -0.4691 24 6 6.8703 -6.8939 -0.2668 25 6 7.1436 -8.0351 -0.9245 26 6 6.2599 -9.0183 -0.4235 27 6 5.4998 -8.4193 0.5109 28 8 5.8773 -7.1339 0.6048 29 6 4.7943 -1.5109 0.0083 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8903 -0.5134 32 1 -0.3633 -0.8897 -0.5143 33 1 1.1554 -2.6815 -0.7202 34 1 1.6384 -2.8062 0.9912 35 1 3.4136 -3.1264 -1.4708 36 1 3.0252 -4.3608 -0.2493 37 1 6.3136 -3.4662 0.8605 38 1 5.1433 -4.7935 0.6690 39 1 7.6423 -5.9522 -3.0799 40 1 6.3886 -4.7779 -3.5461 41 1 8.7943 -4.6668 -6.3326 42 1 8.5953 -5.7469 -0.7800 43 1 7.5580 -5.0109 0.4652 44 1 7.8946 -8.1738 -1.6882 45 1 6.2054 -10.0519 -0.7317 46 1 4.7208 -8.8928 1.0901 47 1 5.5224 -1.1426 0.7311 48 1 5.2405 -1.5334 -0.9860 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069528261.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:24 Heat of formation + Delta-G solvation = 86.559655 kcal Electronic energy + Delta-G solvation = -33001.708937 eV Core-core repulsion = 28674.849181 eV Total energy + Delta-G solvation = -4326.859756 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 359.174 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.21415 -42.46623 -39.96210 -37.48873 -35.44453 -34.62533 -32.96170 -32.84354 -32.41417 -30.43827 -30.30089 -29.27112 -27.71612 -26.65591 -25.55098 -24.81109 -23.48045 -22.27669 -21.62299 -21.19849 -20.64203 -19.78691 -18.76669 -17.47329 -17.21183 -16.89646 -16.65490 -16.40544 -16.00743 -15.75257 -15.42099 -14.98961 -14.84323 -14.48470 -14.35554 -14.09984 -13.87270 -13.57258 -13.31747 -13.01226 -12.83265 -12.77291 -12.73112 -12.64424 -12.41378 -12.30699 -11.89213 -11.78641 -11.60181 -11.44493 -11.35158 -11.23565 -10.96944 -10.72809 -10.32302 -10.28138 -10.07534 -9.96881 -9.83419 -9.76033 -8.95691 -8.55031 -8.46081 -8.15188 -7.98814 -6.15820 -4.21461 1.75947 1.88072 2.47834 2.69363 2.90779 2.93882 3.17372 3.24218 3.33277 3.36495 3.48904 3.74659 4.22044 4.35040 4.37002 4.38761 4.70003 4.73566 4.83063 4.86410 4.95815 5.05037 5.12393 5.14406 5.20012 5.23097 5.32579 5.39099 5.41365 5.49702 5.53596 5.70738 5.74984 5.77984 5.88517 5.90561 5.98007 6.06062 6.16812 6.23621 6.54484 6.58509 6.65593 6.81794 6.93800 7.16540 7.27704 7.32201 7.79254 8.06968 8.09496 8.65403 8.82598 8.85025 9.44783 10.92322 Molecular weight = 359.17amu Principal moments of inertia in cm(-1) A = 0.007637 B = 0.003685 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3665.473900 B = 7596.039981 C =10498.121307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.170 3.830 3 N -0.302 5.302 4 N -0.292 5.292 5 C 0.196 3.804 6 N -0.466 5.466 7 C 0.114 3.886 8 C 0.019 3.981 9 N -0.516 5.516 10 C 0.032 3.968 11 C 0.478 3.522 12 O -0.535 6.535 13 N -0.587 5.587 14 C 0.246 3.754 15 C -0.530 4.530 16 H 0.060 0.940 17 C 0.064 3.936 18 N -0.892 5.892 19 Si 0.897 3.103 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.282 1.282 23 C 0.189 3.811 24 C -0.029 4.029 25 C -0.191 4.191 26 C -0.213 4.213 27 C -0.049 4.049 28 O -0.178 6.178 29 C 0.125 3.875 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.034 0.966 40 H 0.043 0.957 41 H 0.264 0.736 42 H 0.118 0.882 43 H 0.086 0.914 44 H 0.150 0.850 45 H 0.145 0.855 46 H 0.198 0.802 47 H 0.108 0.892 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.448 -6.230 15.051 19.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.098 4.098 3 N -0.143 5.143 4 N -0.132 5.132 5 C -0.072 4.072 6 N -0.157 5.157 7 C -0.010 4.010 8 C -0.109 4.109 9 N -0.239 5.239 10 C -0.100 4.100 11 C 0.264 3.736 12 O -0.413 6.413 13 N -0.318 5.318 14 C 0.127 3.873 15 C -0.569 4.569 16 H 0.078 0.922 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.725 3.275 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.208 1.208 23 C 0.064 3.936 24 C -0.081 4.081 25 C -0.211 4.211 26 C -0.232 4.232 27 C -0.116 4.116 28 O -0.074 6.074 29 C -0.005 4.005 30 H 0.102 0.898 31 H 0.111 0.889 32 H 0.094 0.906 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.126 0.874 38 H 0.129 0.871 39 H 0.052 0.948 40 H 0.061 0.939 41 H 0.073 0.927 42 H 0.136 0.864 43 H 0.104 0.896 44 H 0.168 0.832 45 H 0.163 0.837 46 H 0.215 0.785 47 H 0.126 0.874 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.587 -4.258 15.065 19.477 hybrid contribution 0.648 -1.278 -1.338 1.961 sum -10.939 -5.536 13.726 18.404 Atomic orbital electron populations 1.20148 0.83926 1.04310 1.03719 1.24536 0.96955 0.83126 1.05159 1.74509 0.96045 1.23734 1.20056 1.73949 1.12138 1.07952 1.19138 1.24577 0.86606 0.92375 1.03659 1.45933 1.06933 1.08486 1.54390 1.22146 0.99090 0.76157 1.03585 1.22764 0.88819 0.99422 0.99938 1.62585 1.06249 1.01582 1.53463 1.22418 0.95033 0.98173 0.94339 1.21578 0.80489 0.80115 0.91449 1.90612 1.53356 1.45452 1.51917 1.48461 1.33171 1.40088 1.10054 1.19347 0.96449 0.97216 0.74253 1.21415 1.20744 1.18345 0.96410 0.92226 1.24922 0.97041 0.95915 0.96007 1.69935 1.42776 1.37089 1.03279 0.86453 0.81208 0.81237 0.78625 1.19636 1.20899 1.20847 1.19925 0.95722 0.85146 0.92769 1.23229 0.92520 0.98464 0.93842 1.21725 1.03584 0.92416 1.03339 1.21846 0.99563 1.01054 1.00761 1.23941 1.02745 0.81998 1.02954 1.83977 1.43785 1.28534 1.51133 1.20909 0.90607 0.84757 1.04223 0.89817 0.88855 0.90642 0.88602 0.88951 0.89026 0.88617 0.87424 0.87077 0.94833 0.93879 0.92669 0.86390 0.89590 0.83223 0.83741 0.78489 0.87392 0.88178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.51 10.31 36.01 0.37 -0.14 16 2 C 0.17 2.34 8.08 -155.63 -1.26 1.09 16 3 N -0.30 -5.33 12.24 32.66 0.40 -4.93 16 4 N -0.29 -5.51 12.20 32.76 0.40 -5.11 16 5 C 0.20 3.24 7.86 -155.28 -1.22 2.02 16 6 N -0.47 -6.45 3.12 -110.79 -0.35 -6.80 16 7 C 0.11 1.15 7.06 -3.90 -0.03 1.13 16 8 C 0.02 0.23 4.84 -3.55 -0.02 0.21 16 9 N -0.52 -6.76 4.86 -236.69 -1.15 -7.91 16 10 C 0.03 0.41 4.35 -4.97 -0.02 0.38 16 11 C 0.48 8.49 7.01 -10.98 -0.08 8.41 16 12 O -0.53 -11.55 11.35 5.56 0.06 -11.49 16 13 N -0.59 -10.84 2.44 -176.43 -0.43 -11.27 16 14 C 0.25 5.89 5.16 -5.19 -0.03 5.86 16 15 C -0.53 -14.00 9.39 -34.44 -0.32 -14.33 16 16 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 18 N -0.89 -25.47 13.29 55.43 0.74 -24.74 16 19 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 C 0.19 2.66 5.74 -5.19 -0.03 2.63 16 24 C -0.03 -0.40 6.85 -35.62 -0.24 -0.65 16 25 C -0.19 -2.65 10.81 -39.70 -0.43 -3.08 16 26 C -0.21 -2.50 10.91 -39.70 -0.43 -2.93 16 27 C -0.05 -0.51 12.09 29.42 0.36 -0.15 16 28 O -0.18 -2.21 9.55 5.74 0.05 -2.15 16 29 C 0.12 1.89 5.61 -4.68 -0.03 1.87 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.47 7.92 -51.93 -0.41 0.05 16 33 H 0.10 0.75 7.98 -51.93 -0.41 0.34 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.09 1.48 5.68 -51.93 -0.29 1.19 16 36 H 0.10 1.02 8.00 -51.93 -0.42 0.60 16 37 H 0.11 1.19 7.38 -51.93 -0.38 0.80 16 38 H 0.11 1.28 6.90 -51.93 -0.36 0.92 16 39 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 40 H 0.04 1.20 7.42 -51.93 -0.39 0.81 16 41 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.12 1.65 8.07 -51.93 -0.42 1.23 16 43 H 0.09 0.95 6.44 -51.93 -0.33 0.61 16 44 H 0.15 2.10 8.06 -52.48 -0.42 1.68 16 45 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 46 H 0.20 1.27 8.06 -52.48 -0.42 0.84 16 47 H 0.11 1.47 8.14 -51.93 -0.42 1.05 16 48 H 0.10 1.83 5.85 -51.93 -0.30 1.53 16 LS Contribution 394.02 15.07 5.94 5.94 Total: -1.00 -35.51 394.02 -9.51 -45.01 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -6.64 Total: 3.32 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: -3.51 Total: 3.97 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: -0.39 Total: -60.75 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.12 Total: -13.64 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.51 -9.51 -45.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069528261.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.572 kcal (2) G-P(sol) polarization free energy of solvation -35.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds