Wall clock time and date at job start Tue Mar 31 2020 05:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30921 * 126.48449 * 2 1 4 4 N 1.28981 * 109.75369 * 179.97438 * 3 2 1 5 5 C 1.29636 * 109.47705 * 359.95534 * 4 3 2 6 6 N 1.34413 * 126.48399 * 180.02562 * 2 1 3 7 7 C 1.46316 * 129.75606 * 0.20996 * 6 2 1 8 8 C 1.53467 * 108.17366 * 163.61603 * 7 6 2 9 9 N 1.46966 * 109.74070 * 49.61263 * 8 7 6 10 10 C 1.46901 * 110.99901 * 165.13335 * 9 8 7 11 11 C 1.50701 * 109.47362 * 58.23193 * 10 9 8 12 12 O 1.21279 * 119.99962 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00163 * 180.02562 * 11 10 9 14 14 C 1.46501 * 119.99871 * 180.02562 * 13 11 10 15 15 C 1.50698 * 109.47218 * 89.99872 * 14 13 11 16 16 H 1.07995 * 120.00235 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99648 * 179.97438 * 15 14 13 18 18 N 1.31508 * 119.99974 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99695 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46887 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47060 * 119.99762 * 19 17 15 22 22 H 1.48501 * 109.46826 * 239.99943 * 19 17 15 23 23 C 1.46502 * 119.99745 * 359.97438 * 13 11 10 24 24 C 1.50701 * 109.46649 * 90.00044 * 23 13 11 25 25 C 1.34520 * 125.78719 * 90.00412 * 24 23 13 26 26 C 1.41378 * 106.84084 * 179.97438 * 25 24 23 27 27 C 1.34517 * 106.83923 * 359.97438 * 26 25 24 28 28 O 1.34296 * 125.79391 * 269.69057 * 24 23 13 29 29 C 1.47386 * 111.25143 * 289.26757 * 9 8 7 30 30 H 1.09002 * 109.47099 * 269.97639 * 1 2 3 31 31 H 1.09002 * 109.46777 * 29.97150 * 1 2 3 32 32 H 1.08997 * 109.47054 * 149.96836 * 1 2 3 33 33 H 1.09001 * 109.71824 * 43.95001 * 7 6 2 34 34 H 1.08993 * 109.75898 * 283.30541 * 7 6 2 35 35 H 1.09003 * 109.42569 * 289.52890 * 8 7 6 36 36 H 1.09001 * 109.38069 * 169.66581 * 8 7 6 37 37 H 1.09003 * 109.47174 * 178.22906 * 10 9 8 38 38 H 1.08995 * 109.47197 * 298.23216 * 10 9 8 39 39 H 1.08999 * 109.46432 * 209.99990 * 14 13 11 40 40 H 1.08998 * 109.46984 * 329.99553 * 14 13 11 41 41 H 0.97003 * 119.99588 * 179.97438 * 18 17 15 42 42 H 1.09000 * 109.46836 * 209.99790 * 23 13 11 43 43 H 1.08995 * 109.47156 * 330.00196 * 23 13 11 44 44 H 1.08005 * 126.58119 * 0.02562 * 25 24 23 45 45 H 1.07999 * 126.58305 * 179.97438 * 26 25 24 46 46 H 1.08006 * 125.78967 * 180.02562 * 27 26 25 47 47 H 1.09004 * 109.75687 * 169.70951 * 29 9 8 48 48 H 1.09002 * 109.75539 * 290.44522 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2855 1.0526 0.0000 4 7 3.5207 0.6813 0.0005 5 6 3.5828 -0.6135 0.0019 6 7 2.3063 -1.0807 -0.0005 7 6 1.9583 -2.5019 -0.0052 8 6 3.2044 -3.2985 -0.4150 9 7 4.3564 -2.8659 0.3885 10 6 5.4630 -3.8262 0.2817 11 6 5.8644 -3.9715 -1.1636 12 8 5.2853 -3.3379 -2.0204 13 7 6.8661 -4.8063 -1.5041 14 6 7.2566 -4.9471 -2.9091 15 6 8.3252 -3.9364 -3.2372 16 1 8.6779 -3.2569 -2.4755 17 6 8.8526 -3.8794 -4.5099 18 7 8.4235 -4.7072 -5.4372 19 14 10.1777 -2.6270 -4.9164 20 1 10.4833 -1.8198 -3.7079 21 1 11.4051 -3.3328 -5.3643 22 1 9.6976 -1.7325 -6.0002 23 6 7.5653 -5.5721 -0.4691 24 6 6.8703 -6.8939 -0.2668 25 6 7.1436 -8.0351 -0.9245 26 6 6.2599 -9.0183 -0.4235 27 6 5.4998 -8.4193 0.5109 28 8 5.8773 -7.1339 0.6048 29 6 4.7943 -1.5109 0.0083 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8903 -0.5134 32 1 -0.3633 -0.8897 -0.5143 33 1 1.1554 -2.6815 -0.7202 34 1 1.6384 -2.8062 0.9912 35 1 3.4136 -3.1264 -1.4708 36 1 3.0252 -4.3608 -0.2493 37 1 6.3136 -3.4662 0.8605 38 1 5.1433 -4.7935 0.6690 39 1 7.6423 -5.9522 -3.0799 40 1 6.3886 -4.7779 -3.5461 41 1 8.7943 -4.6668 -6.3326 42 1 8.5953 -5.7469 -0.7800 43 1 7.5580 -5.0109 0.4652 44 1 7.8946 -8.1738 -1.6882 45 1 6.2054 -10.0519 -0.7317 46 1 4.7208 -8.8928 1.0901 47 1 5.5224 -1.1426 0.7311 48 1 5.2405 -1.5334 -0.9860 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069528261.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:23 Heat of formation + Delta-G solvation = 62.492480 kcal Electronic energy + Delta-G solvation = -33002.752568 eV Core-core repulsion = 28674.849181 eV Total energy + Delta-G solvation = -4327.903387 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 359.174 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -44.34489 -43.41390 -41.29209 -38.70113 -36.87275 -35.74555 -34.88970 -33.83815 -33.48199 -31.55380 -31.44996 -30.49116 -29.08055 -27.88866 -26.76222 -26.02544 -24.90252 -23.72311 -22.58895 -22.25305 -21.66454 -20.92640 -20.06057 -18.85486 -18.41672 -18.14528 -17.92485 -17.70832 -17.36400 -16.83555 -16.52757 -16.40056 -16.20970 -15.86125 -15.42190 -15.25281 -14.92796 -14.78936 -14.41023 -14.25955 -13.98951 -13.79034 -13.71329 -13.59899 -13.52017 -13.44967 -13.33798 -13.04929 -12.83848 -12.80151 -12.69182 -12.61341 -12.47181 -12.38738 -12.23349 -11.72300 -11.45302 -11.34631 -11.08107 -10.79246 -10.67048 -10.14958 -9.67501 -9.45676 -9.30817 -8.25438 -6.38756 0.78522 0.79344 1.34530 1.37914 1.48202 1.49437 1.62255 1.73424 1.73914 2.13753 2.30990 2.40698 2.46234 3.06132 3.18413 3.41318 3.46973 3.59850 3.79405 3.84433 4.04381 4.10650 4.15666 4.19304 4.26414 4.36615 4.41252 4.43990 4.50973 4.52671 4.61739 4.65096 4.69520 4.88051 4.92668 4.94637 4.98429 4.98902 5.08409 5.15879 5.20850 5.25941 5.48526 5.50277 5.55001 5.64387 5.76677 5.94512 6.02831 6.24855 6.59859 6.72631 7.23190 7.37374 7.64720 8.82012 Molecular weight = 359.17amu Principal moments of inertia in cm(-1) A = 0.007637 B = 0.003685 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3665.473900 B = 7596.039981 C =10498.121307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.183 3.817 3 N -0.351 5.351 4 N -0.335 5.335 5 C 0.180 3.820 6 N -0.466 5.466 7 C 0.113 3.887 8 C 0.017 3.983 9 N -0.499 5.499 10 C 0.046 3.954 11 C 0.470 3.530 12 O -0.580 6.580 13 N -0.593 5.593 14 C 0.268 3.732 15 C -0.538 4.538 16 H 0.058 0.942 17 C 0.011 3.989 18 N -0.927 5.927 19 Si 0.960 3.040 20 H -0.265 1.265 21 H -0.270 1.270 22 H -0.288 1.288 23 C 0.188 3.812 24 C -0.042 4.042 25 C -0.212 4.212 26 C -0.234 4.234 27 C -0.028 4.028 28 O -0.177 6.177 29 C 0.132 3.868 30 H 0.108 0.892 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.049 0.951 36 H 0.120 0.880 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.021 0.979 40 H -0.006 1.006 41 H 0.265 0.735 42 H 0.112 0.888 43 H 0.124 0.876 44 H 0.135 0.865 45 H 0.163 0.837 46 H 0.245 0.755 47 H 0.121 0.879 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.175 -7.461 18.084 23.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.085 4.085 3 N -0.192 5.192 4 N -0.174 5.174 5 C -0.090 4.090 6 N -0.157 5.157 7 C -0.008 4.008 8 C -0.111 4.111 9 N -0.222 5.222 10 C -0.085 4.085 11 C 0.259 3.741 12 O -0.461 6.461 13 N -0.323 5.323 14 C 0.146 3.854 15 C -0.576 4.576 16 H 0.076 0.924 17 C -0.188 4.188 18 N -0.567 5.567 19 Si 0.785 3.215 20 H -0.189 1.189 21 H -0.195 1.195 22 H -0.214 1.214 23 C 0.065 3.935 24 C -0.094 4.094 25 C -0.233 4.233 26 C -0.253 4.253 27 C -0.096 4.096 28 O -0.073 6.073 29 C 0.002 3.998 30 H 0.126 0.874 31 H 0.116 0.884 32 H 0.122 0.878 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.068 0.932 36 H 0.138 0.862 37 H 0.152 0.848 38 H 0.154 0.846 39 H 0.039 0.961 40 H 0.013 0.987 41 H 0.074 0.926 42 H 0.130 0.870 43 H 0.142 0.858 44 H 0.153 0.847 45 H 0.180 0.820 46 H 0.260 0.740 47 H 0.139 0.861 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.311 -5.513 18.145 23.170 hybrid contribution 1.072 -0.997 -2.288 2.716 sum -12.239 -6.510 15.857 21.063 Atomic orbital electron populations 1.20453 0.79846 1.05909 1.05740 1.25527 0.98882 0.82163 1.01959 1.74402 0.96154 1.25849 1.22754 1.73820 1.13428 1.09515 1.20628 1.24681 0.88074 0.92106 1.04096 1.46181 1.05955 1.09946 1.53628 1.22474 0.98478 0.73635 1.06247 1.22789 0.89531 1.01283 0.97472 1.62706 1.06333 1.00549 1.52579 1.22536 0.96003 0.99424 0.90503 1.22580 0.79409 0.78747 0.93374 1.90621 1.54712 1.46948 1.53836 1.48388 1.33997 1.41186 1.08740 1.18668 0.93641 0.95790 0.77264 1.21733 1.20944 1.18484 0.96485 0.92352 1.25765 0.99250 0.97710 0.96063 1.70050 1.44227 1.38768 1.03670 0.85477 0.78925 0.78865 0.78240 1.18859 1.19506 1.21414 1.20083 0.95013 0.85626 0.92770 1.22923 0.93612 0.97935 0.94880 1.21891 1.04118 0.93877 1.03375 1.22125 0.99736 1.01789 1.01621 1.24815 1.02117 0.80867 1.01755 1.83964 1.43161 1.29594 1.50586 1.20761 0.90596 0.86009 1.02467 0.87381 0.88426 0.87850 0.85809 0.85692 0.93232 0.86236 0.84830 0.84568 0.96076 0.98743 0.92564 0.87015 0.85800 0.84738 0.81987 0.73951 0.86133 0.91978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.80 10.31 71.24 0.73 -0.07 16 2 C 0.18 4.79 8.08 138.21 1.12 5.91 16 3 N -0.35 -12.48 12.24 -50.58 -0.62 -13.10 16 4 N -0.33 -13.00 12.20 -50.27 -0.61 -13.61 16 5 C 0.18 6.01 7.86 138.11 1.09 7.10 16 6 N -0.47 -12.20 3.12 -504.43 -1.57 -13.78 16 7 C 0.11 1.94 7.06 86.57 0.61 2.55 16 8 C 0.02 0.40 4.84 86.45 0.42 0.82 16 9 N -0.50 -12.21 4.86 -902.75 -4.39 -16.60 16 10 C 0.05 1.09 4.35 85.56 0.37 1.46 16 11 C 0.47 16.90 7.01 87.66 0.61 17.52 16 12 O -0.58 -26.39 11.35 -3.03 -0.03 -26.42 16 13 N -0.59 -22.38 2.44 -830.50 -2.03 -24.41 16 14 C 0.27 13.54 5.16 85.63 0.44 13.98 16 15 C -0.54 -29.48 9.39 25.60 0.24 -29.24 16 16 H 0.06 3.14 7.81 -2.91 -0.02 3.12 16 17 C 0.01 0.64 5.46 84.66 0.46 1.10 16 18 N -0.93 -55.02 13.29 21.45 0.28 -54.73 16 19 Si 0.96 44.38 29.54 68.60 2.03 46.41 16 20 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 23 C 0.19 5.15 5.74 85.63 0.49 5.64 16 24 C -0.04 -1.11 6.85 24.83 0.17 -0.94 16 25 C -0.21 -5.89 10.81 22.19 0.24 -5.65 16 26 C -0.23 -5.05 10.91 22.19 0.24 -4.80 16 27 C -0.03 -0.49 12.09 66.97 0.81 0.32 16 28 O -0.18 -3.82 9.55 -2.37 -0.02 -3.84 16 29 C 0.13 4.04 5.61 85.49 0.48 4.52 16 30 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.10 0.81 7.92 -2.39 -0.02 0.79 16 33 H 0.12 1.46 7.98 -2.39 -0.02 1.44 16 34 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.05 1.63 5.68 -2.39 -0.01 1.62 16 36 H 0.12 2.17 8.00 -2.39 -0.02 2.15 16 37 H 0.13 2.50 7.38 -2.39 -0.02 2.48 16 38 H 0.14 2.61 6.90 -2.39 -0.02 2.60 16 39 H 0.02 1.11 8.07 -2.39 -0.02 1.09 16 40 H -0.01 -0.33 7.42 -2.39 -0.02 -0.35 16 41 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 42 H 0.11 3.17 8.07 -2.39 -0.02 3.15 16 43 H 0.12 2.40 6.44 -2.39 -0.02 2.39 16 44 H 0.13 4.02 8.06 -2.91 -0.02 4.00 16 45 H 0.16 2.78 8.06 -2.91 -0.02 2.76 16 46 H 0.24 1.75 8.06 -2.91 -0.02 1.73 16 47 H 0.12 3.27 8.14 -2.39 -0.02 3.25 16 48 H 0.06 2.42 5.85 -2.39 -0.01 2.40 16 Total: -1.00 -85.17 394.02 2.56 -82.61 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.99 Total: 17.27 kcal Atomic # 6 Polarization: 11.68 SS G_CDS: 8.53 Total: 20.21 kcal Atomic # 7 Polarization: -127.30 SS G_CDS: -8.93 Total: -136.23 kcal Atomic # 8 Polarization: -30.21 SS G_CDS: -0.06 Total: -30.27 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -85.17 2.56 -82.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069528261.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.101 kcal (2) G-P(sol) polarization free energy of solvation -85.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds