Wall clock time and date at job start Tue Mar 31 2020 05:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47172 * 2 1 4 4 C 1.50706 * 109.46766 * 119.99587 * 2 1 3 5 5 N 1.30834 * 125.60594 * 300.02595 * 4 2 1 6 6 C 1.33371 * 109.12894 * 179.97438 * 5 4 2 7 7 C 1.35308 * 107.99041 * 0.03630 * 6 5 4 8 8 N 1.35557 * 125.61619 * 119.90124 * 4 2 1 9 9 C 1.46499 * 126.53423 * 0.07239 * 8 4 2 10 10 C 1.50699 * 123.50817 * 179.81782 * 7 6 5 11 11 C 1.53548 * 107.84031 * 344.31899 * 10 7 6 12 12 N 1.46945 * 109.58827 * 48.88600 * 11 10 7 13 13 C 1.46899 * 111.00086 * 164.40126 * 12 11 10 14 14 C 1.53001 * 109.47215 * 190.65795 * 13 12 11 15 15 C 1.50699 * 109.47454 * 179.97438 * 14 13 12 16 16 O 1.21297 * 119.99426 * 359.97438 * 15 14 13 17 17 N 1.34773 * 120.00068 * 179.97438 * 15 14 13 18 18 C 1.37110 * 119.99673 * 180.02562 * 17 15 14 19 19 H 1.07990 * 119.99992 * 20.21310 * 18 17 15 20 20 C 1.38946 * 119.99455 * 200.22062 * 18 17 15 21 21 N 1.31406 * 120.00415 * 21.42105 * 20 18 17 22 22 Si 1.86805 * 119.99585 * 201.42331 * 20 18 17 23 23 H 1.48501 * 109.47202 * 89.99820 * 22 20 18 24 24 H 1.48502 * 109.47120 * 210.00048 * 22 20 18 25 25 H 1.48497 * 109.47038 * 330.00046 * 22 20 18 26 26 C 1.46500 * 120.00267 * 359.97438 * 17 15 14 27 27 C 1.47202 * 109.46624 * 83.95491 * 26 17 15 28 28 N 8.89671 * 100.43034 * 178.46982 * 4 1 2 29 29 C 1.47277 * 111.50782 * 288.72551 * 12 11 10 30 30 H 1.09004 * 109.47392 * 300.00478 * 1 2 3 31 31 H 1.09009 * 109.47009 * 59.99969 * 1 2 3 32 32 H 1.08995 * 109.47184 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47258 * 239.99964 * 2 1 3 34 34 H 1.09000 * 109.46813 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.46659 * 300.00031 * 3 2 1 36 36 H 1.08998 * 109.46931 * 59.99405 * 3 2 1 37 37 H 1.09005 * 109.46718 * 269.86812 * 9 8 4 38 38 H 1.08998 * 109.47299 * 29.86706 * 9 8 4 39 39 H 1.08999 * 109.47131 * 149.86835 * 9 8 4 40 40 H 1.09009 * 109.78422 * 224.73244 * 10 7 6 41 41 H 1.08996 * 109.83229 * 103.93423 * 10 7 6 42 42 H 1.08998 * 109.44955 * 288.85244 * 11 10 7 43 43 H 1.08993 * 109.45143 * 168.92640 * 11 10 7 44 44 H 1.08999 * 109.46906 * 310.65541 * 13 12 11 45 45 H 1.08998 * 109.47264 * 70.66140 * 13 12 11 46 46 H 1.09000 * 109.47537 * 300.00220 * 14 13 12 47 47 H 1.09001 * 109.47194 * 59.99829 * 14 13 12 48 48 H 0.97006 * 120.00100 * 180.02562 * 21 20 18 49 49 H 1.09000 * 109.46651 * 203.95089 * 26 17 15 50 50 H 1.08991 * 109.46968 * 323.95535 * 26 17 15 51 51 H 1.09006 * 109.69670 * 171.11556 * 29 12 11 52 52 H 1.08993 * 109.69792 * 291.66951 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 7 1.7843 -0.3605 2.4666 6 6 2.3885 -1.2157 3.2926 7 6 3.0389 -2.1338 2.5409 8 7 2.8133 -1.8183 1.2390 9 6 3.3203 -2.5369 0.0674 10 6 3.8445 -3.2663 3.1236 11 6 4.1048 -2.9461 4.6026 12 7 2.8454 -2.5560 5.2513 13 6 2.9707 -2.6012 6.7142 14 6 1.5868 -2.4516 7.3495 15 6 1.7152 -2.4986 8.8503 16 8 2.8063 -2.6384 9.3615 17 7 0.6178 -2.3852 9.6244 18 6 0.7348 -2.4274 10.9898 19 1 1.6870 -2.2240 11.4567 20 6 -0.3720 -2.7320 11.7727 21 7 -1.3904 -3.3762 11.2486 22 14 -0.4122 -2.2256 13.5704 23 1 -1.0108 -0.8719 13.6900 24 1 -1.2290 -3.1979 14.3403 25 1 0.9712 -2.2046 14.1097 26 6 -0.6999 -2.2158 9.0069 27 6 -1.2420 -3.5338 8.6382 28 7 -1.6595 -4.5531 8.3549 29 6 2.3947 -1.2282 4.8009 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 2.6071 -3.3088 -0.2220 38 1 3.4537 -1.8376 -0.7581 39 1 4.2771 -2.9989 0.3105 40 1 4.7925 -3.3559 2.5930 41 1 3.2858 -4.1985 3.0406 42 1 4.8200 -2.1269 4.6762 43 1 4.5109 -3.8276 5.0987 44 1 3.4061 -3.5549 7.0123 45 1 3.6139 -1.7874 7.0491 46 1 1.1512 -1.4980 7.0514 47 1 0.9434 -3.2653 7.0146 48 1 -2.1632 -3.5886 11.7951 49 1 -1.3729 -1.7311 9.7142 50 1 -0.6058 -1.5987 8.1135 51 1 1.3888 -1.0355 5.1740 52 1 3.0768 -0.4633 5.1719 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069528775.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:01 Heat of formation + Delta-G solvation = 62.656939 kcal Electronic energy + Delta-G solvation = -32266.082309 eV Core-core repulsion = 28074.019148 eV Total energy + Delta-G solvation = -4192.063161 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.206 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.46947 -39.02260 -37.92197 -35.76624 -35.50298 -34.42782 -34.25652 -32.78030 -31.79433 -29.81611 -29.04785 -27.46744 -27.41897 -27.28598 -25.46164 -24.55306 -23.05345 -22.17843 -21.56068 -19.46993 -19.13155 -18.87686 -17.83276 -17.15307 -16.48707 -16.29855 -16.18089 -15.61103 -15.07218 -14.77606 -14.68285 -14.44102 -14.35129 -14.06126 -13.90533 -13.67399 -13.52375 -13.35382 -13.06691 -12.94899 -12.88018 -12.51400 -12.47396 -12.38173 -12.13288 -11.84020 -11.82013 -11.64848 -11.55180 -11.43363 -11.29336 -11.23299 -11.21655 -11.09944 -11.01891 -10.65349 -10.45715 -10.36295 -10.20647 -9.86117 -9.62025 -9.21235 -8.54771 -8.26100 -7.99579 -7.97635 -6.45657 -3.96606 1.89096 2.54112 3.02406 3.13529 3.25114 3.29156 3.59560 3.76173 3.88734 4.05484 4.12846 4.19310 4.33599 4.36990 4.60206 4.70698 4.78894 4.85062 4.86997 4.91017 4.96613 4.97951 5.12822 5.22332 5.24527 5.29766 5.37876 5.45029 5.48055 5.53461 5.57824 5.59459 5.63536 5.65509 5.69905 5.80512 5.84978 5.92470 5.97580 5.98896 6.08778 6.23420 6.28153 6.37141 6.41492 6.53356 6.69492 7.02345 7.15691 7.20575 7.51517 7.96743 8.08090 8.32765 8.82747 9.04992 9.24647 9.79385 10.60642 Molecular weight = 359.21amu Principal moments of inertia in cm(-1) A = 0.015805 B = 0.002124 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.130185 B =13180.508336 C =13798.258522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.003 4.003 3 C -0.140 4.140 4 C 0.197 3.803 5 N -0.468 5.468 6 C 0.008 3.992 7 C -0.021 4.021 8 N -0.450 5.450 9 C 0.072 3.928 10 C -0.033 4.033 11 C 0.063 3.937 12 N -0.541 5.541 13 C 0.081 3.919 14 C -0.133 4.133 15 C 0.460 3.540 16 O -0.576 6.576 17 N -0.444 5.444 18 C -0.314 4.314 19 H 0.107 0.893 20 C 0.032 3.968 21 N -0.875 5.875 22 Si 0.926 3.074 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.269 1.269 26 C 0.223 3.777 27 C 0.246 3.754 28 N -0.472 5.472 29 C 0.141 3.859 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.051 0.949 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.039 0.961 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.045 0.955 46 H 0.081 0.919 47 H 0.087 0.913 48 H 0.273 0.727 49 H 0.123 0.877 50 H 0.085 0.915 51 H 0.094 0.906 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.256 6.833 -24.729 26.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.023 4.023 3 C -0.198 4.198 4 C -0.063 4.063 5 N -0.186 5.186 6 C -0.123 4.123 7 C -0.137 4.137 8 N -0.132 5.132 9 C -0.071 4.071 10 C -0.072 4.072 11 C -0.066 4.066 12 N -0.266 5.266 13 C -0.047 4.047 14 C -0.174 4.174 15 C 0.248 3.752 16 O -0.460 6.460 17 N -0.165 5.165 18 C -0.441 4.441 19 H 0.125 0.875 20 C -0.172 4.172 21 N -0.514 5.514 22 Si 0.753 3.247 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.194 1.194 26 C 0.095 3.905 27 C -0.073 4.073 28 N -0.152 5.152 29 C 0.013 3.987 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.090 0.910 41 H 0.101 0.899 42 H 0.057 0.943 43 H 0.104 0.896 44 H 0.102 0.898 45 H 0.063 0.937 46 H 0.100 0.900 47 H 0.105 0.895 48 H 0.083 0.917 49 H 0.141 0.859 50 H 0.103 0.897 51 H 0.112 0.888 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.240 5.437 -24.813 26.157 hybrid contribution 0.888 0.192 0.956 1.319 sum 7.128 5.629 -23.857 25.527 Atomic orbital electron populations 1.21782 0.93005 1.02213 1.02789 1.19489 0.96700 0.95573 0.90579 1.21783 1.00795 0.94375 1.02808 1.23237 0.98485 0.89251 0.95351 1.69724 1.22986 1.27311 0.98588 1.20374 1.01327 0.94960 0.95609 1.20871 1.07382 1.02522 0.82911 1.44768 1.39240 1.23092 1.06145 1.22003 1.00699 0.97540 0.86884 1.20155 0.97512 0.94696 0.94839 1.22031 0.90655 1.00814 0.93086 1.61858 1.30125 1.27346 1.07301 1.21760 0.96470 1.02607 0.83825 1.21589 0.98508 1.03400 0.93879 1.20125 0.85071 0.82042 0.87962 1.90536 1.26342 1.53715 1.75360 1.43624 1.03182 1.63271 1.06375 1.19688 0.98386 1.46655 0.79393 0.87525 1.25288 0.96137 0.95273 1.00502 1.69855 1.08336 1.35183 1.38019 0.85920 0.78578 0.78314 0.81904 1.20174 1.21186 1.19381 1.18673 0.87132 0.86563 0.98100 1.29320 0.92820 0.95322 0.89811 1.80943 1.09517 1.11159 1.13587 1.20333 1.01728 0.89291 0.87380 0.91114 0.91989 0.92787 0.90472 0.92946 0.91970 0.91150 0.90492 0.89613 0.89661 0.90993 0.89851 0.94267 0.89597 0.89838 0.93722 0.90050 0.89452 0.91687 0.85948 0.89703 0.88786 0.93328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.18 37.16 0.34 -0.76 16 2 C 0.00 -0.02 3.25 -91.77 -0.30 -0.32 16 3 C -0.14 -1.04 9.18 37.16 0.34 -0.70 16 4 C 0.20 2.27 6.42 -154.66 -0.99 1.28 16 5 N -0.47 -6.74 11.24 -6.86 -0.08 -6.82 16 6 C 0.01 0.11 7.09 -82.90 -0.59 -0.47 16 7 C -0.02 -0.26 6.80 -81.86 -0.56 -0.82 16 8 N -0.45 -4.68 3.14 -116.56 -0.37 -5.05 16 9 C 0.07 0.40 10.74 59.85 0.64 1.05 16 10 C -0.03 -0.33 6.26 -27.60 -0.17 -0.51 16 11 C 0.06 0.72 5.53 -3.52 -0.02 0.70 16 12 N -0.54 -7.55 4.61 -235.27 -1.09 -8.63 16 13 C 0.08 1.28 4.25 -3.82 -0.02 1.26 16 14 C -0.13 -2.32 4.23 -27.88 -0.12 -2.44 16 15 C 0.46 10.33 7.56 -10.99 -0.08 10.25 16 16 O -0.58 -14.84 15.65 5.54 0.09 -14.76 16 17 N -0.44 -10.39 2.60 -117.94 -0.31 -10.70 16 18 C -0.31 -8.12 9.27 -14.93 -0.14 -8.26 16 19 H 0.11 2.91 7.43 -52.49 -0.39 2.52 16 20 C 0.03 0.79 4.84 -17.47 -0.08 0.71 16 21 N -0.88 -22.44 9.59 55.50 0.53 -21.91 16 22 Si 0.93 19.82 29.60 -169.99 -5.03 14.78 16 23 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 24 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 26 C 0.22 4.47 4.91 -6.83 -0.03 4.44 16 27 C 0.25 5.53 12.83 -20.71 -0.27 5.27 16 28 N -0.47 -11.49 18.55 42.21 0.78 -10.70 16 29 C 0.14 1.98 5.46 -4.70 -0.03 1.95 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.45 6.75 -51.93 -0.35 0.10 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.09 0.32 7.07 -51.93 -0.37 -0.05 16 39 H 0.08 0.37 7.91 -51.93 -0.41 -0.04 16 40 H 0.07 0.55 8.02 -51.92 -0.42 0.13 16 41 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.04 0.44 8.07 -51.93 -0.42 0.02 16 43 H 0.09 0.90 7.81 -51.93 -0.41 0.49 16 44 H 0.08 1.40 7.81 -51.93 -0.41 0.99 16 45 H 0.04 0.73 8.05 -51.93 -0.42 0.31 16 46 H 0.08 1.23 5.93 -51.93 -0.31 0.92 16 47 H 0.09 1.58 7.49 -51.93 -0.39 1.19 16 48 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 49 H 0.12 2.50 6.63 -51.93 -0.34 2.16 16 50 H 0.09 1.32 6.69 -51.93 -0.35 0.97 16 51 H 0.09 1.34 6.71 -51.93 -0.35 0.99 16 52 H 0.05 0.67 8.11 -51.93 -0.42 0.25 16 LS Contribution 418.02 15.07 6.30 6.30 Total: -1.00 -33.82 418.02 -9.49 -43.31 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -8.26 Total: 1.55 kcal Atomic # 6 Polarization: 14.69 SS G_CDS: -2.07 Total: 12.62 kcal Atomic # 7 Polarization: -63.29 SS G_CDS: -0.52 Total: -63.81 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: 0.09 Total: -14.76 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.03 Total: 14.78 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -33.82 -9.49 -43.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069528775.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.968 kcal (2) G-P(sol) polarization free energy of solvation -33.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds