Wall clock time and date at job start Tue Mar 31 2020 05:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47172 * 2 1 4 4 C 1.50706 * 109.46766 * 119.99587 * 2 1 3 5 5 N 1.30834 * 125.60594 * 300.02595 * 4 2 1 6 6 C 1.33371 * 109.12894 * 179.97438 * 5 4 2 7 7 C 1.35308 * 107.99041 * 0.03630 * 6 5 4 8 8 N 1.35557 * 125.61619 * 119.90124 * 4 2 1 9 9 C 1.46499 * 126.53423 * 0.07239 * 8 4 2 10 10 C 1.50699 * 123.50817 * 179.81782 * 7 6 5 11 11 C 1.53548 * 107.84031 * 344.31899 * 10 7 6 12 12 N 1.46945 * 109.58827 * 48.88600 * 11 10 7 13 13 C 1.46899 * 111.00086 * 164.40126 * 12 11 10 14 14 C 1.53001 * 109.47215 * 190.65795 * 13 12 11 15 15 C 1.50699 * 109.47454 * 179.97438 * 14 13 12 16 16 O 1.21297 * 119.99426 * 359.97438 * 15 14 13 17 17 N 1.34773 * 120.00068 * 179.97438 * 15 14 13 18 18 C 1.37110 * 119.99673 * 180.02562 * 17 15 14 19 19 H 1.07990 * 119.99992 * 20.21310 * 18 17 15 20 20 C 1.38946 * 119.99455 * 200.22062 * 18 17 15 21 21 N 1.31406 * 120.00415 * 21.42105 * 20 18 17 22 22 Si 1.86805 * 119.99585 * 201.42331 * 20 18 17 23 23 H 1.48501 * 109.47202 * 89.99820 * 22 20 18 24 24 H 1.48502 * 109.47120 * 210.00048 * 22 20 18 25 25 H 1.48497 * 109.47038 * 330.00046 * 22 20 18 26 26 C 1.46500 * 120.00267 * 359.97438 * 17 15 14 27 27 C 1.47202 * 109.46624 * 83.95491 * 26 17 15 28 28 N 8.89671 * 100.43034 * 178.46982 * 4 1 2 29 29 C 1.47277 * 111.50782 * 288.72551 * 12 11 10 30 30 H 1.09004 * 109.47392 * 300.00478 * 1 2 3 31 31 H 1.09009 * 109.47009 * 59.99969 * 1 2 3 32 32 H 1.08995 * 109.47184 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47258 * 239.99964 * 2 1 3 34 34 H 1.09000 * 109.46813 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.46659 * 300.00031 * 3 2 1 36 36 H 1.08998 * 109.46931 * 59.99405 * 3 2 1 37 37 H 1.09005 * 109.46718 * 269.86812 * 9 8 4 38 38 H 1.08998 * 109.47299 * 29.86706 * 9 8 4 39 39 H 1.08999 * 109.47131 * 149.86835 * 9 8 4 40 40 H 1.09009 * 109.78422 * 224.73244 * 10 7 6 41 41 H 1.08996 * 109.83229 * 103.93423 * 10 7 6 42 42 H 1.08998 * 109.44955 * 288.85244 * 11 10 7 43 43 H 1.08993 * 109.45143 * 168.92640 * 11 10 7 44 44 H 1.08999 * 109.46906 * 310.65541 * 13 12 11 45 45 H 1.08998 * 109.47264 * 70.66140 * 13 12 11 46 46 H 1.09000 * 109.47537 * 300.00220 * 14 13 12 47 47 H 1.09001 * 109.47194 * 59.99829 * 14 13 12 48 48 H 0.97006 * 120.00100 * 180.02562 * 21 20 18 49 49 H 1.09000 * 109.46651 * 203.95089 * 26 17 15 50 50 H 1.08991 * 109.46968 * 323.95535 * 26 17 15 51 51 H 1.09006 * 109.69670 * 171.11556 * 29 12 11 52 52 H 1.08993 * 109.69792 * 291.66951 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 7 1.7843 -0.3605 2.4666 6 6 2.3885 -1.2157 3.2926 7 6 3.0389 -2.1338 2.5409 8 7 2.8133 -1.8183 1.2390 9 6 3.3203 -2.5369 0.0674 10 6 3.8445 -3.2663 3.1236 11 6 4.1048 -2.9461 4.6026 12 7 2.8454 -2.5560 5.2513 13 6 2.9707 -2.6012 6.7142 14 6 1.5868 -2.4516 7.3495 15 6 1.7152 -2.4986 8.8503 16 8 2.8063 -2.6384 9.3615 17 7 0.6178 -2.3852 9.6244 18 6 0.7348 -2.4274 10.9898 19 1 1.6870 -2.2240 11.4567 20 6 -0.3720 -2.7320 11.7727 21 7 -1.3904 -3.3762 11.2486 22 14 -0.4122 -2.2256 13.5704 23 1 -1.0108 -0.8719 13.6900 24 1 -1.2290 -3.1979 14.3403 25 1 0.9712 -2.2046 14.1097 26 6 -0.6999 -2.2158 9.0069 27 6 -1.2420 -3.5338 8.6382 28 7 -1.6595 -4.5531 8.3549 29 6 2.3947 -1.2282 4.8009 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 2.6071 -3.3088 -0.2220 38 1 3.4537 -1.8376 -0.7581 39 1 4.2771 -2.9989 0.3105 40 1 4.7925 -3.3559 2.5930 41 1 3.2858 -4.1985 3.0406 42 1 4.8200 -2.1269 4.6762 43 1 4.5109 -3.8276 5.0987 44 1 3.4061 -3.5549 7.0123 45 1 3.6139 -1.7874 7.0491 46 1 1.1512 -1.4980 7.0514 47 1 0.9434 -3.2653 7.0146 48 1 -2.1632 -3.5886 11.7951 49 1 -1.3729 -1.7311 9.7142 50 1 -0.6058 -1.5987 8.1135 51 1 1.3888 -1.0355 5.1740 52 1 3.0768 -0.4633 5.1719 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069528775.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:00 Heat of formation + Delta-G solvation = 41.958902 kcal Electronic energy + Delta-G solvation = -32266.979843 eV Core-core repulsion = 28074.019148 eV Total energy + Delta-G solvation = -4192.960695 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.206 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -43.30652 -40.71561 -39.06963 -37.55152 -36.27950 -36.08834 -35.18994 -34.03917 -33.53677 -30.98727 -30.08294 -29.10337 -28.06976 -28.00872 -26.91803 -25.78354 -24.14592 -23.03295 -22.70179 -20.62148 -20.16231 -20.01266 -19.70272 -18.31430 -18.07605 -17.63660 -17.11470 -16.62613 -16.57185 -16.04903 -15.85323 -15.70208 -15.51795 -15.18085 -14.96327 -14.67926 -14.55248 -14.38191 -14.25695 -14.14321 -13.96187 -13.73787 -13.58687 -13.41290 -13.32240 -13.11866 -13.08592 -12.96709 -12.86996 -12.72463 -12.40868 -12.34574 -12.27819 -12.21204 -12.13330 -12.08675 -12.00814 -11.83674 -11.73078 -11.09314 -10.77244 -10.45142 -10.39531 -9.89234 -9.34859 -8.90352 -8.38446 -5.95845 1.05927 1.41273 1.49030 1.59294 1.83109 1.85777 2.08104 2.09002 2.27128 2.36525 2.67056 3.01934 3.22660 3.42336 3.60600 3.62758 3.83568 3.93050 3.98643 4.06414 4.09560 4.13498 4.16565 4.21886 4.36258 4.40218 4.48019 4.50064 4.54415 4.56151 4.66670 4.68995 4.76714 4.82636 4.84016 4.84407 4.86953 4.96007 4.98246 5.02299 5.06607 5.07939 5.10960 5.37533 5.38934 5.49163 5.50459 5.76756 6.01014 6.08017 6.09591 6.35558 6.41589 7.03111 7.14009 7.20437 7.37291 7.94482 8.65649 Molecular weight = 359.21amu Principal moments of inertia in cm(-1) A = 0.015805 B = 0.002124 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.130185 B =13180.508336 C =13798.258522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.003 4.003 3 C -0.135 4.135 4 C 0.194 3.806 5 N -0.507 5.507 6 C -0.030 4.030 7 C -0.024 4.024 8 N -0.449 5.449 9 C 0.061 3.939 10 C -0.025 4.025 11 C 0.058 3.942 12 N -0.543 5.543 13 C 0.092 3.908 14 C -0.119 4.119 15 C 0.454 3.546 16 O -0.615 6.615 17 N -0.456 5.456 18 C -0.340 4.340 19 H 0.083 0.917 20 C 0.004 3.996 21 N -0.893 5.893 22 Si 0.987 3.013 23 H -0.259 1.259 24 H -0.288 1.288 25 H -0.277 1.277 26 C 0.224 3.776 27 C 0.257 3.743 28 N -0.507 5.507 29 C 0.145 3.855 30 H 0.046 0.954 31 H 0.086 0.914 32 H 0.046 0.954 33 H 0.108 0.892 34 H 0.050 0.950 35 H 0.086 0.914 36 H 0.046 0.954 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.086 0.914 42 H 0.040 0.960 43 H 0.095 0.905 44 H 0.072 0.928 45 H 0.037 0.963 46 H 0.108 0.892 47 H 0.085 0.915 48 H 0.273 0.727 49 H 0.122 0.878 50 H 0.135 0.865 51 H 0.085 0.915 52 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.531 7.180 -27.312 29.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.023 4.023 3 C -0.193 4.193 4 C -0.068 4.068 5 N -0.226 5.226 6 C -0.160 4.160 7 C -0.141 4.141 8 N -0.130 5.130 9 C -0.080 4.080 10 C -0.064 4.064 11 C -0.070 4.070 12 N -0.268 5.268 13 C -0.036 4.036 14 C -0.159 4.159 15 C 0.244 3.756 16 O -0.501 6.501 17 N -0.176 5.176 18 C -0.467 4.467 19 H 0.100 0.900 20 C -0.198 4.198 21 N -0.531 5.531 22 Si 0.812 3.188 23 H -0.184 1.184 24 H -0.214 1.214 25 H -0.202 1.202 26 C 0.097 3.903 27 C -0.060 4.060 28 N -0.188 5.188 29 C 0.017 3.983 30 H 0.065 0.935 31 H 0.105 0.895 32 H 0.066 0.934 33 H 0.126 0.874 34 H 0.069 0.931 35 H 0.105 0.895 36 H 0.065 0.935 37 H 0.106 0.894 38 H 0.127 0.873 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.104 0.896 42 H 0.058 0.942 43 H 0.113 0.887 44 H 0.090 0.910 45 H 0.055 0.945 46 H 0.126 0.874 47 H 0.103 0.897 48 H 0.083 0.917 49 H 0.139 0.861 50 H 0.152 0.848 51 H 0.103 0.897 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 6.507 5.782 -27.437 28.785 hybrid contribution 0.835 0.076 1.692 1.888 sum 7.342 5.858 -25.745 27.405 Atomic orbital electron populations 1.21746 0.93062 1.01766 1.02829 1.19695 0.96591 0.95803 0.90214 1.21742 1.00650 0.94064 1.02826 1.23873 0.97899 0.89457 0.95530 1.69655 1.24378 1.28512 1.00051 1.20490 1.03281 0.96553 0.95715 1.21153 1.06860 1.02366 0.83735 1.45043 1.38494 1.22774 1.06691 1.22389 1.01595 0.98167 0.85803 1.20174 0.98715 0.93802 0.93672 1.22164 0.89523 1.01142 0.94141 1.61847 1.31697 1.27405 1.05853 1.21550 0.95145 1.01676 0.85278 1.21489 0.99733 1.04638 0.90053 1.20952 0.84247 0.80501 0.89880 1.90504 1.27838 1.55148 1.76599 1.43804 1.04575 1.63285 1.05960 1.19602 0.97964 1.48173 0.80989 0.89955 1.25927 0.95440 0.94603 1.03849 1.69938 1.08592 1.35395 1.39197 0.85014 0.77950 0.78518 0.77342 1.18412 1.21365 1.20158 1.18989 0.85472 0.85920 0.99895 1.29786 0.91962 0.95500 0.88770 1.80939 1.10679 1.12173 1.14981 1.20218 1.01017 0.89036 0.88047 0.93517 0.89474 0.93441 0.87423 0.93072 0.89521 0.93527 0.89400 0.87343 0.88070 0.87943 0.89594 0.94217 0.88657 0.90967 0.94470 0.87391 0.89682 0.91665 0.86071 0.84767 0.89670 0.93911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.18 71.98 0.66 -1.29 16 2 C 0.00 -0.04 3.25 -11.54 -0.04 -0.08 16 3 C -0.13 -1.78 9.18 71.98 0.66 -1.12 16 4 C 0.19 4.22 6.42 137.87 0.89 5.11 16 5 N -0.51 -14.68 11.24 -175.62 -1.97 -16.65 16 6 C -0.03 -0.87 7.09 41.69 0.30 -0.57 16 7 C -0.02 -0.56 6.80 41.26 0.28 -0.28 16 8 N -0.45 -8.38 3.14 -522.68 -1.64 -10.02 16 9 C 0.06 0.48 10.74 127.77 1.37 1.85 16 10 C -0.03 -0.45 6.26 30.03 0.19 -0.26 16 11 C 0.06 1.27 5.53 86.48 0.48 1.75 16 12 N -0.54 -14.96 4.61 -898.27 -4.14 -19.10 16 13 C 0.09 2.92 4.25 86.30 0.37 3.28 16 14 C -0.12 -4.11 4.23 29.85 0.13 -3.98 16 15 C 0.45 20.67 7.56 87.66 0.66 21.33 16 16 O -0.62 -32.59 15.65 -3.08 -0.05 -32.64 16 17 N -0.46 -21.48 2.60 -645.43 -1.68 -23.16 16 18 C -0.34 -17.87 9.27 84.04 0.78 -17.09 16 19 H 0.08 4.66 7.43 -2.92 -0.02 4.64 16 20 C 0.00 0.20 4.84 84.93 0.41 0.61 16 21 N -0.89 -45.62 9.59 21.66 0.21 -45.42 16 22 Si 0.99 40.66 29.60 68.60 2.03 42.69 16 23 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 24 H -0.29 -11.88 7.11 99.48 0.71 -11.18 16 25 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 26 C 0.22 8.81 4.91 84.57 0.42 9.22 16 27 C 0.26 11.51 12.83 89.43 1.15 12.65 16 28 N -0.51 -24.65 18.55 20.02 0.37 -24.28 16 29 C 0.15 4.10 5.46 85.53 0.47 4.57 16 30 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.11 0.84 6.75 -2.39 -0.02 0.83 16 34 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 38 H 0.11 0.35 7.07 -2.39 -0.02 0.34 16 39 H 0.10 0.49 7.91 -2.39 -0.02 0.47 16 40 H 0.10 1.22 8.02 -2.38 -0.02 1.20 16 41 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.04 0.86 8.07 -2.39 -0.02 0.85 16 43 H 0.10 1.88 7.81 -2.39 -0.02 1.86 16 44 H 0.07 2.45 7.81 -2.39 -0.02 2.43 16 45 H 0.04 1.23 8.05 -2.39 -0.02 1.21 16 46 H 0.11 3.15 5.93 -2.39 -0.01 3.13 16 47 H 0.08 3.04 7.49 -2.39 -0.02 3.02 16 48 H 0.27 13.51 8.31 -92.70 -0.77 12.74 16 49 H 0.12 4.85 6.63 -2.39 -0.02 4.84 16 50 H 0.13 3.90 6.69 -2.39 -0.02 3.88 16 51 H 0.09 2.46 6.71 -2.38 -0.02 2.44 16 52 H 0.04 1.22 8.11 -2.39 -0.02 1.20 16 Total: -1.00 -75.82 418.02 3.21 -72.60 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: 0.93 Total: 20.25 kcal Atomic # 6 Polarization: 26.56 SS G_CDS: 9.16 Total: 35.72 kcal Atomic # 7 Polarization: -129.77 SS G_CDS: -8.86 Total: -138.62 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -0.05 Total: -32.64 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.69 kcal Total: -75.82 3.21 -72.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069528775.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.563 kcal (2) G-P(sol) polarization free energy of solvation -75.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds