Wall clock time and date at job start Tue Mar 31 2020 05:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46495 * 109.46793 * 165.62658 * 3 2 1 5 5 C 1.37099 * 119.99977 * 264.43639 * 4 3 2 6 6 H 1.07999 * 120.00127 * 208.56744 * 5 4 3 7 7 C 1.38954 * 120.00049 * 28.56869 * 5 4 3 8 8 N 1.31409 * 119.99539 * 357.09644 * 7 5 4 9 9 Si 1.86794 * 119.99892 * 177.09232 * 7 5 4 10 10 H 1.48500 * 109.47524 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.47051 * 120.00281 * 9 7 5 12 12 H 1.48505 * 109.47282 * 239.99532 * 9 7 5 13 13 C 1.34775 * 120.00143 * 84.43481 * 4 3 2 14 14 O 1.21300 * 120.00084 * 179.97438 * 13 4 3 15 15 C 1.50699 * 120.00018 * 0.02562 * 13 4 3 16 16 C 1.53004 * 109.47060 * 179.97438 * 15 13 4 17 17 N 1.46907 * 109.46836 * 179.97438 * 16 15 13 18 18 C 1.48554 * 110.99879 * 285.17910 * 17 16 15 19 19 C 1.54390 * 104.59093 * 200.95821 * 18 17 16 20 20 C 1.54262 * 105.05724 * 23.85638 * 19 18 17 21 21 C 1.48718 * 111.01314 * 169.66414 * 17 16 15 22 22 H 1.09010 * 110.38572 * 40.25034 * 21 17 16 23 23 C 1.52993 * 110.51386 * 277.75740 * 21 17 16 24 24 C 1.50699 * 109.47466 * 178.59677 * 23 21 17 25 25 C 1.38273 * 119.98373 * 274.65640 * 24 23 21 26 26 C 1.38214 * 120.04909 * 179.76361 * 25 24 23 27 27 C 1.38225 * 120.03124 * 0.51158 * 26 25 24 28 28 C 1.38443 * 119.96779 * 359.74298 * 27 26 25 29 29 F 1.35095 * 120.02308 * 179.97438 * 28 27 26 30 30 C 1.38172 * 119.99365 * 94.93063 * 24 23 21 31 31 H 1.09001 * 109.47041 * 45.62443 * 3 2 1 32 32 H 1.08997 * 109.47166 * 285.62478 * 3 2 1 33 33 H 0.97004 * 119.99456 * 180.02562 * 8 7 5 34 34 H 1.09005 * 109.46993 * 59.99510 * 15 13 4 35 35 H 1.08997 * 109.47417 * 299.99943 * 15 13 4 36 36 H 1.08997 * 109.46802 * 60.00617 * 16 15 13 37 37 H 1.08994 * 109.47607 * 299.99740 * 16 15 13 38 38 H 1.08995 * 110.41630 * 82.18574 * 18 17 16 39 39 H 1.08994 * 110.41590 * 319.73118 * 18 17 16 40 40 H 1.08997 * 110.32537 * 264.95826 * 19 18 17 41 41 H 1.08998 * 110.40806 * 142.79397 * 19 18 17 42 42 H 1.08996 * 110.32418 * 118.89776 * 20 19 18 43 43 H 1.09001 * 110.31789 * 241.00079 * 20 19 18 44 44 H 1.09005 * 109.46528 * 298.59081 * 23 21 17 45 45 H 1.08997 * 109.47557 * 58.58666 * 23 21 17 46 46 H 1.08004 * 119.96958 * 0.02562 * 25 24 23 47 47 H 1.08004 * 119.99055 * 180.25377 * 26 25 24 48 48 H 1.07993 * 120.01721 * 179.71899 * 27 26 25 49 49 H 1.08008 * 120.01152 * 0.02562 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0957 1.3388 -0.3429 5 6 3.4326 1.6345 -1.6385 6 1 4.1842 2.3824 -1.8438 7 6 2.8069 0.9721 -2.6876 8 7 1.9340 0.0223 -2.4373 9 14 3.2067 1.4318 -4.4534 10 1 4.2140 2.5229 -4.4650 11 1 3.7532 0.2466 -5.1619 12 1 1.9710 1.8909 -5.1373 13 6 3.2132 2.2793 0.6153 14 8 3.6174 3.3872 0.3315 15 6 2.8434 1.9541 2.0396 16 6 3.0684 3.1859 2.9189 17 7 2.7074 2.8691 4.3072 18 6 1.2323 2.8143 4.4744 19 6 1.0045 3.0187 5.9876 20 6 2.2592 3.7662 6.4844 21 6 3.1417 3.9504 5.2312 22 1 2.9647 4.9277 4.7819 23 6 4.6198 3.7869 5.5907 24 6 5.0435 4.9123 6.4989 25 6 5.4515 6.1187 5.9602 26 6 5.8358 7.1535 6.7920 27 6 5.8226 6.9800 8.1633 28 6 5.4193 5.7709 8.7035 29 9 5.4065 5.6000 10.0436 30 6 5.0295 4.7366 7.8693 31 1 2.9717 -0.7179 -0.7346 32 1 2.9715 -0.2760 0.9897 33 1 1.4975 -0.4405 -3.1697 34 1 3.4652 1.1337 2.3981 35 1 1.7944 1.6616 2.0850 36 1 2.4469 4.0065 2.5605 37 1 4.1175 3.4780 2.8736 38 1 0.8499 1.8431 4.1603 39 1 0.7554 3.6133 3.9069 40 1 0.9137 2.0558 6.4903 41 1 0.1123 3.6206 6.1598 42 1 1.9829 4.7357 6.8988 43 1 2.7831 3.1709 7.2322 44 1 4.7666 2.8343 6.0999 45 1 5.2196 3.8086 4.6808 46 1 5.4660 6.2538 4.8887 47 1 6.1504 8.0967 6.3703 48 1 6.1272 7.7872 8.8128 49 1 4.7154 3.7926 8.2897 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069534968.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:02 Heat of formation + Delta-G solvation = -35.541353 kcal Electronic energy + Delta-G solvation = -31439.016980 eV Core-core repulsion = 27086.942566 eV Total energy + Delta-G solvation = -4352.074414 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 359.175 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -49.86591 -40.93571 -40.43077 -39.39955 -37.58123 -36.15134 -34.68995 -33.92130 -33.56543 -31.51453 -30.57930 -29.97698 -29.04829 -26.83861 -26.49035 -24.23866 -23.65778 -22.72839 -21.79517 -20.98681 -20.50626 -19.65695 -18.28057 -18.13457 -17.99012 -17.33832 -17.08376 -16.78273 -16.64759 -16.53420 -16.13318 -16.01278 -15.89118 -15.43572 -14.82009 -14.76852 -14.68552 -14.57742 -14.25326 -14.05509 -13.96675 -13.68763 -13.50898 -13.37130 -13.22222 -13.00901 -12.98677 -12.83595 -12.71210 -12.63984 -12.40380 -12.30959 -12.11669 -12.09648 -12.06350 -11.81434 -11.71239 -11.60153 -11.35360 -11.04637 -10.42563 -9.88024 -9.85638 -9.60531 -9.48965 -8.36114 -6.05184 0.20941 0.29035 1.37657 1.45074 1.56219 1.86055 2.07068 2.29137 2.37624 2.60291 2.82134 3.05333 3.26005 3.35951 3.62797 3.66740 3.76379 3.82879 3.93313 4.06095 4.08306 4.16124 4.18338 4.26146 4.31067 4.37530 4.41204 4.49882 4.58430 4.59408 4.70325 4.76127 4.83919 4.91071 4.98081 5.00536 5.05743 5.06966 5.08997 5.12956 5.17669 5.23008 5.28021 5.32921 5.41532 5.45858 5.62239 5.92837 5.97880 6.03075 6.11118 6.43208 7.06110 7.13593 7.36214 7.93273 8.65003 Molecular weight = 359.18amu Principal moments of inertia in cm(-1) A = 0.016709 B = 0.002061 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.328899 B =13579.866124 C =14811.174848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C 0.264 3.736 3 C 0.224 3.776 4 N -0.462 5.462 5 C -0.327 4.327 6 H 0.081 0.919 7 C 0.002 3.998 8 N -0.901 5.901 9 Si 0.985 3.015 10 H -0.271 1.271 11 H -0.266 1.266 12 H -0.290 1.290 13 C 0.458 3.542 14 O -0.615 6.615 15 C -0.115 4.115 16 C 0.076 3.924 17 N -0.503 5.503 18 C 0.025 3.975 19 C -0.119 4.119 20 C -0.112 4.112 21 C 0.069 3.931 22 H 0.043 0.957 23 C -0.062 4.062 24 C -0.050 4.050 25 C -0.136 4.136 26 C -0.088 4.088 27 C -0.163 4.163 28 C 0.079 3.921 29 F -0.150 7.150 30 C -0.150 4.150 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.272 0.728 34 H 0.121 0.879 35 H 0.079 0.921 36 H 0.018 0.982 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.030 0.970 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.083 0.917 44 H 0.091 0.909 45 H 0.074 0.926 46 H 0.133 0.867 47 H 0.154 0.846 48 H 0.148 0.852 49 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.588 6.070 21.546 23.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.199 5.199 2 C -0.053 4.053 3 C 0.098 3.902 4 N -0.182 5.182 5 C -0.455 4.455 6 H 0.099 0.901 7 C -0.199 4.199 8 N -0.541 5.541 9 Si 0.811 3.189 10 H -0.195 1.195 11 H -0.191 1.191 12 H -0.217 1.217 13 C 0.248 3.752 14 O -0.500 6.500 15 C -0.155 4.155 16 C -0.053 4.053 17 N -0.227 5.227 18 C -0.103 4.103 19 C -0.157 4.157 20 C -0.150 4.150 21 C -0.039 4.039 22 H 0.061 0.939 23 C -0.100 4.100 24 C -0.051 4.051 25 C -0.154 4.154 26 C -0.106 4.106 27 C -0.182 4.182 28 C 0.060 3.940 29 F -0.129 7.129 30 C -0.169 4.169 31 H 0.146 0.854 32 H 0.149 0.851 33 H 0.082 0.918 34 H 0.139 0.861 35 H 0.097 0.903 36 H 0.036 0.964 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.049 0.951 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.102 0.898 44 H 0.110 0.890 45 H 0.092 0.908 46 H 0.151 0.849 47 H 0.171 0.829 48 H 0.166 0.834 49 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.271 5.948 21.439 22.865 hybrid contribution -0.178 0.982 -1.546 1.840 sum 5.094 6.931 19.893 21.673 Atomic orbital electron populations 1.80894 1.14812 1.09707 1.14456 1.29787 0.95846 0.91323 0.88328 1.19072 0.80006 0.87387 1.03763 1.43739 1.57402 1.09464 1.07610 1.19614 1.21005 1.23172 0.81666 0.90102 1.25974 0.94773 0.95780 1.03367 1.69741 1.27494 1.23287 1.33568 0.84965 0.77560 0.78555 0.77862 1.19548 1.19072 1.21663 1.21121 0.81467 0.84050 0.88604 1.90512 1.51620 1.23676 1.84192 1.21431 1.03112 1.00965 0.90033 1.21747 1.01240 0.94837 0.87486 1.65292 1.11082 1.41828 1.04487 1.23200 0.88304 1.01223 0.97555 1.22282 0.98132 1.01593 0.93660 1.22334 0.95392 1.00784 0.96495 1.22625 0.95061 0.92798 0.93425 0.93885 1.20479 0.94252 0.96703 0.98554 1.19715 0.96908 0.95485 0.92958 1.21405 0.99844 0.93075 1.01071 1.21279 0.97345 0.99893 0.92114 1.21385 1.03180 0.96751 0.96881 1.17932 1.03117 0.96111 0.76832 1.91473 1.94518 1.96091 1.30821 1.21157 1.03114 0.99490 0.93097 0.85383 0.85076 0.91814 0.86066 0.90294 0.96352 0.90391 0.90070 0.95126 0.89974 0.90740 0.91186 0.89829 0.89048 0.90768 0.84925 0.82853 0.83393 0.83788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -24.10 18.54 20.01 0.37 -23.73 16 2 C 0.26 11.29 12.80 89.44 1.14 12.44 16 3 C 0.22 8.42 4.91 84.58 0.42 8.84 16 4 N -0.46 -20.92 2.60 -645.42 -1.68 -22.60 16 5 C -0.33 -16.70 9.18 84.04 0.77 -15.93 16 6 H 0.08 4.41 7.50 -2.91 -0.02 4.39 16 7 C 0.00 0.09 5.32 84.93 0.45 0.54 16 8 N -0.90 -44.52 8.81 21.66 0.19 -44.33 16 9 Si 0.99 40.94 29.55 68.60 2.03 42.97 16 10 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 11 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 12 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 13 C 0.46 19.91 7.57 87.66 0.66 20.57 16 14 O -0.61 -31.53 15.74 -3.09 -0.05 -31.58 16 15 C -0.12 -3.66 4.42 29.85 0.13 -3.53 16 16 C 0.08 2.25 4.07 86.30 0.35 2.60 16 17 N -0.50 -11.87 5.02 -856.31 -4.30 -16.17 16 18 C 0.03 0.57 5.93 86.46 0.51 1.08 16 19 C -0.12 -2.04 7.00 31.49 0.22 -1.82 16 20 C -0.11 -1.85 5.75 31.49 0.18 -1.67 16 21 C 0.07 1.38 2.31 45.03 0.10 1.48 16 22 H 0.04 0.97 8.00 -2.38 -0.02 0.95 16 23 C -0.06 -1.10 4.98 29.85 0.15 -0.95 16 24 C -0.05 -0.84 4.80 -19.87 -0.10 -0.94 16 25 C -0.14 -2.21 9.72 22.27 0.22 -1.99 16 26 C -0.09 -1.23 10.04 22.26 0.22 -1.00 16 27 C -0.16 -2.43 10.03 22.32 0.22 -2.20 16 28 C 0.08 1.39 7.30 22.38 0.16 1.56 16 29 F -0.15 -2.93 17.27 44.97 0.78 -2.15 16 30 C -0.15 -2.46 9.00 22.31 0.20 -2.26 16 31 H 0.13 5.05 6.53 -2.39 -0.02 5.04 16 32 H 0.13 3.51 6.67 -2.39 -0.02 3.50 16 33 H 0.27 13.14 8.31 -92.71 -0.77 12.37 16 34 H 0.12 3.13 7.41 -2.38 -0.02 3.11 16 35 H 0.08 2.54 6.86 -2.39 -0.02 2.52 16 36 H 0.02 0.63 7.72 -2.39 -0.02 0.61 16 37 H 0.08 2.36 7.11 -2.39 -0.02 2.35 16 38 H 0.08 1.88 7.85 -2.39 -0.02 1.86 16 39 H 0.03 0.78 7.75 -2.39 -0.02 0.76 16 40 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.08 1.21 7.18 -2.39 -0.02 1.19 16 44 H 0.09 1.49 7.97 -2.38 -0.02 1.47 16 45 H 0.07 1.43 7.24 -2.39 -0.02 1.41 16 46 H 0.13 2.05 8.06 -2.91 -0.02 2.03 16 47 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 48 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 49 H 0.14 2.00 7.69 -2.91 -0.02 1.97 16 Total: -1.00 -65.10 404.35 4.34 -60.76 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.97 Total: 20.01 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: 6.03 Total: 16.83 kcal Atomic # 7 Polarization: -101.42 SS G_CDS: -5.41 Total: -106.83 kcal Atomic # 8 Polarization: -31.53 SS G_CDS: -0.05 Total: -31.58 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.78 Total: -2.15 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Total: -65.10 4.34 -60.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069534968.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.217 kcal (2) G-P(sol) polarization free energy of solvation -65.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds