Wall clock time and date at job start Tue Mar 31 2020 05:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47165 * 277.34769 * 3 2 1 5 5 C 1.37099 * 119.99930 * 264.23213 * 4 3 2 6 6 H 1.07999 * 119.99764 * 197.72082 * 5 4 3 7 7 C 1.38939 * 120.00019 * 17.72561 * 5 4 3 8 8 N 1.31415 * 120.00152 * 21.39480 * 7 5 4 9 9 Si 1.86806 * 119.99978 * 201.39727 * 7 5 4 10 10 H 1.48499 * 109.47300 * 89.99877 * 9 7 5 11 11 H 1.48497 * 109.46960 * 209.99725 * 9 7 5 12 12 H 1.48498 * 109.46934 * 329.99872 * 9 7 5 13 13 C 1.34780 * 120.00036 * 84.23757 * 4 3 2 14 14 O 1.21290 * 120.00003 * 180.02562 * 13 4 3 15 15 C 1.50699 * 119.99813 * 359.97438 * 13 4 3 16 16 C 1.52996 * 109.47193 * 180.02562 * 15 13 4 17 17 N 1.46899 * 109.47532 * 179.97438 * 16 15 13 18 18 C 1.48539 * 110.99948 * 52.60237 * 17 16 15 19 19 C 1.54927 * 103.22844 * 159.72028 * 18 17 16 20 20 C 1.54600 * 102.92605 * 322.59002 * 19 18 17 21 21 C 1.47899 * 111.00472 * 169.99909 * 17 16 15 22 22 H 1.09001 * 110.07741 * 333.60587 * 21 17 16 23 23 C 1.53003 * 109.91719 * 94.80281 * 21 17 16 24 24 C 1.50701 * 109.47034 * 294.04731 * 23 21 17 25 25 C 1.38260 * 119.98870 * 270.25175 * 24 23 21 26 26 C 1.38223 * 120.05187 * 180.25663 * 25 24 23 27 27 C 1.38216 * 120.02584 * 359.49274 * 26 25 24 28 28 C 1.38440 * 119.97387 * 0.25158 * 27 26 25 29 29 F 1.35095 * 120.02482 * 179.97438 * 28 27 26 30 30 C 1.38174 * 119.98609 * 90.00296 * 24 23 21 31 31 H 1.09007 * 109.46764 * 157.34774 * 3 2 1 32 32 H 1.09004 * 109.47439 * 37.35080 * 3 2 1 33 33 H 0.97006 * 119.99884 * 179.97438 * 8 7 5 34 34 H 1.08996 * 109.47326 * 60.00285 * 15 13 4 35 35 H 1.09004 * 109.47166 * 300.00656 * 15 13 4 36 36 H 1.09003 * 109.47175 * 60.00135 * 16 15 13 37 37 H 1.08997 * 109.47206 * 299.99986 * 16 15 13 38 38 H 1.09001 * 110.66150 * 41.28645 * 18 17 16 39 39 H 1.08996 * 110.66871 * 278.15920 * 18 17 16 40 40 H 1.08997 * 110.72757 * 204.22767 * 19 18 17 41 41 H 1.09003 * 110.72531 * 80.94575 * 19 18 17 42 42 H 1.09002 * 110.30887 * 263.03988 * 20 19 18 43 43 H 1.08997 * 110.39509 * 140.91313 * 20 19 18 44 44 H 1.08999 * 109.47020 * 174.04236 * 23 21 17 45 45 H 1.09000 * 109.46948 * 54.04921 * 23 21 17 46 46 H 1.08009 * 119.97204 * 0.02562 * 25 24 23 47 47 H 1.08001 * 119.98301 * 179.76400 * 26 25 24 48 48 H 1.08005 * 120.01073 * 180.22978 * 27 26 25 49 49 H 1.08003 * 120.01456 * 359.97077 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0964 -0.1758 1.3698 5 6 3.4369 0.9184 2.1224 6 1 4.0533 0.7988 3.0011 7 6 2.9889 2.1812 1.7548 8 7 1.9355 2.3045 0.9788 9 14 3.8841 3.7037 2.3633 10 1 4.9487 4.0719 1.3956 11 1 2.9208 4.8266 2.4904 12 1 4.4945 3.4228 3.6875 13 6 3.2111 -1.4137 1.8902 14 8 3.6150 -1.5598 3.0245 15 6 2.8364 -2.6164 1.0631 16 6 3.0578 -3.8887 1.8835 17 7 2.6919 -5.0611 1.0775 18 6 3.3892 -5.0440 -0.2340 19 6 3.3214 -6.5228 -0.6908 20 6 3.5125 -7.3021 0.6306 21 6 3.1132 -6.3135 1.7418 22 1 3.9660 -6.1229 2.3933 23 6 1.9525 -6.8869 2.5572 24 6 1.6275 -5.9526 3.6941 25 6 2.2610 -6.1017 4.9139 26 6 1.9600 -5.2487 5.9591 27 6 1.0328 -4.2391 5.7827 28 6 0.4016 -4.0855 4.5602 29 9 -0.5053 -3.0993 4.3868 30 6 0.7001 -4.9440 3.5154 31 1 2.9708 0.9493 -0.3958 32 1 2.9718 -0.8161 -0.6235 33 1 1.6225 3.1862 0.7225 34 1 3.4565 -2.6489 0.1673 35 1 1.7870 -2.5474 0.7762 36 1 2.4373 -3.8561 2.7791 37 1 4.1069 -3.9579 2.1707 38 1 4.4247 -4.7252 -0.1149 39 1 2.8657 -4.3989 -0.9396 40 1 4.1259 -6.7475 -1.3910 41 1 2.3503 -6.7458 -1.1331 42 1 4.5544 -7.6008 0.7464 43 1 2.8639 -8.1778 0.6524 44 1 2.2355 -7.8608 2.9568 45 1 1.0779 -6.9974 1.9163 46 1 2.9891 -6.8876 5.0513 47 1 2.4528 -5.3686 6.9126 48 1 0.8005 -3.5704 6.5985 49 1 0.2086 -4.8248 2.5611 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069534971.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:08 Heat of formation + Delta-G solvation = -32.589297 kcal Electronic energy + Delta-G solvation = -33211.734850 eV Core-core repulsion = 28859.788447 eV Total energy + Delta-G solvation = -4351.946403 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 359.175 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -49.93079 -41.09055 -40.41685 -39.29169 -37.63003 -36.21970 -34.61425 -33.92995 -33.65313 -31.49059 -30.43268 -30.06956 -29.09850 -26.91513 -26.48444 -24.24941 -23.65418 -22.52476 -21.89951 -20.97389 -20.39987 -19.74769 -18.31364 -18.25356 -18.04208 -17.37896 -17.10346 -16.78517 -16.74196 -16.44160 -16.26831 -15.97855 -15.77914 -15.37640 -14.95815 -14.73911 -14.66318 -14.46588 -14.24659 -14.20774 -13.84932 -13.71751 -13.56271 -13.31373 -13.24969 -13.15050 -12.91650 -12.79010 -12.67996 -12.44622 -12.34199 -12.29750 -12.19459 -12.14817 -12.07385 -11.94509 -11.63709 -11.48709 -11.30013 -11.13063 -10.43228 -9.94109 -9.81273 -9.60575 -9.24849 -8.41908 -5.97968 0.22327 0.30922 1.37759 1.45448 1.56081 1.79341 2.04924 2.23952 2.33941 2.64998 2.86265 2.98358 3.30143 3.33266 3.57703 3.65084 3.82787 3.86456 3.95325 4.01891 4.10381 4.15558 4.21966 4.27187 4.33016 4.39372 4.43500 4.48599 4.55443 4.67402 4.72842 4.77046 4.83325 4.88547 4.97606 5.01499 5.09546 5.10716 5.12660 5.18149 5.20743 5.25338 5.36649 5.40343 5.45741 5.46868 5.60449 5.98491 6.01346 6.11590 6.13892 6.38632 6.99054 7.10661 7.33931 7.91218 8.62066 Molecular weight = 359.18amu Principal moments of inertia in cm(-1) A = 0.009865 B = 0.003588 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2837.616119 B = 7802.981492 C = 9102.618964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C 0.257 3.743 3 C 0.223 3.777 4 N -0.456 5.456 5 C -0.341 4.341 6 H 0.080 0.920 7 C 0.005 3.995 8 N -0.894 5.894 9 Si 0.987 3.013 10 H -0.256 1.256 11 H -0.287 1.287 12 H -0.279 1.279 13 C 0.449 3.551 14 O -0.615 6.615 15 C -0.120 4.120 16 C 0.076 3.924 17 N -0.516 5.516 18 C 0.022 3.978 19 C -0.116 4.116 20 C -0.118 4.118 21 C 0.067 3.933 22 H 0.047 0.953 23 C -0.060 4.060 24 C -0.051 4.051 25 C -0.129 4.129 26 C -0.090 4.090 27 C -0.174 4.174 28 C 0.060 3.940 29 F -0.165 7.165 30 C -0.142 4.142 31 H 0.125 0.875 32 H 0.137 0.863 33 H 0.274 0.726 34 H 0.114 0.886 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.025 0.975 38 H 0.045 0.955 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.091 0.909 44 H 0.108 0.892 45 H 0.082 0.918 46 H 0.160 0.840 47 H 0.159 0.841 48 H 0.132 0.868 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.839 -21.457 -2.750 22.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.189 5.189 2 C -0.061 4.061 3 C 0.097 3.903 4 N -0.176 5.176 5 C -0.468 4.468 6 H 0.098 0.902 7 C -0.197 4.197 8 N -0.532 5.532 9 Si 0.811 3.189 10 H -0.181 1.181 11 H -0.213 1.213 12 H -0.204 1.204 13 C 0.239 3.761 14 O -0.501 6.501 15 C -0.161 4.161 16 C -0.053 4.053 17 N -0.241 5.241 18 C -0.105 4.105 19 C -0.154 4.154 20 C -0.156 4.156 21 C -0.042 4.042 22 H 0.065 0.935 23 C -0.097 4.097 24 C -0.051 4.051 25 C -0.147 4.147 26 C -0.108 4.108 27 C -0.193 4.193 28 C 0.041 3.959 29 F -0.144 7.144 30 C -0.161 4.161 31 H 0.143 0.857 32 H 0.154 0.846 33 H 0.084 0.916 34 H 0.132 0.868 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.043 0.957 38 H 0.063 0.937 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.109 0.891 44 H 0.126 0.874 45 H 0.101 0.899 46 H 0.178 0.822 47 H 0.176 0.824 48 H 0.150 0.850 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.661 -21.298 -2.348 21.738 hybrid contribution 0.791 2.197 0.831 2.479 sum 4.453 -19.101 -1.518 19.672 Atomic orbital electron populations 1.80898 1.14839 1.13384 1.09773 1.29793 0.95864 0.89158 0.91249 1.19060 0.80052 1.06151 0.85074 1.43825 1.56699 1.05206 1.11887 1.19598 1.30879 0.85039 1.11311 0.90187 1.25903 0.95137 1.01290 0.97405 1.69956 1.20286 1.25586 1.37394 0.85025 0.78181 0.76892 0.78789 1.18067 1.21258 1.20376 1.20999 0.82266 0.85186 0.87600 1.90506 1.51853 1.86366 1.21354 1.21550 1.02936 0.91956 0.99609 1.21893 0.98393 0.88813 0.96195 1.64746 1.54819 1.00979 1.03557 1.23399 0.96990 0.99008 0.91143 1.22452 1.02984 0.92702 0.97262 1.22446 1.02459 0.97871 0.92863 1.22480 0.95645 0.90150 0.95879 0.93506 1.20756 0.99031 0.96758 0.93200 1.19981 0.93754 0.95155 0.96181 1.21495 1.00377 1.00743 0.92038 1.21314 0.95451 0.93164 1.00880 1.21351 1.00019 1.01719 0.96220 1.18271 0.92153 0.88662 0.96834 1.91446 1.65709 1.61000 1.96240 1.21069 1.01103 0.96323 0.97603 0.85725 0.84611 0.91579 0.86804 0.90274 0.91557 0.95693 0.93711 0.89751 0.89513 0.90601 0.90313 0.89083 0.87352 0.89932 0.82220 0.82386 0.85014 0.85597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -25.08 18.54 20.01 0.37 -24.71 16 2 C 0.26 11.58 12.95 89.44 1.16 12.74 16 3 C 0.22 8.76 4.91 84.57 0.42 9.18 16 4 N -0.46 -21.79 2.60 -645.42 -1.68 -23.47 16 5 C -0.34 -18.24 9.32 84.04 0.78 -17.46 16 6 H 0.08 4.64 7.39 -2.91 -0.02 4.62 16 7 C 0.00 0.23 4.87 84.92 0.41 0.65 16 8 N -0.89 -45.92 9.48 21.66 0.21 -45.72 16 9 Si 0.99 41.02 29.60 68.60 2.03 43.05 16 10 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 11 H -0.29 -11.94 7.11 99.48 0.71 -11.23 16 12 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 13 C 0.45 21.00 7.57 87.66 0.66 21.66 16 14 O -0.62 -33.76 15.63 -3.06 -0.05 -33.81 16 15 C -0.12 -4.19 3.96 29.85 0.12 -4.07 16 16 C 0.08 2.46 3.79 86.30 0.33 2.79 16 17 N -0.52 -12.43 4.75 -858.11 -4.08 -16.50 16 18 C 0.02 0.42 5.10 86.64 0.44 0.87 16 19 C -0.12 -1.56 7.06 31.80 0.22 -1.34 16 20 C -0.12 -1.47 6.57 31.47 0.21 -1.27 16 21 C 0.07 1.24 2.60 45.06 0.12 1.36 16 22 H 0.05 0.98 7.58 -2.39 -0.02 0.96 16 23 C -0.06 -1.02 4.81 29.85 0.14 -0.88 16 24 C -0.05 -1.19 4.09 -19.87 -0.08 -1.27 16 25 C -0.13 -2.70 9.70 22.27 0.22 -2.48 16 26 C -0.09 -2.12 10.04 22.26 0.22 -1.90 16 27 C -0.17 -5.32 10.03 22.31 0.22 -5.10 16 28 C 0.06 2.12 7.24 22.38 0.16 2.29 16 29 F -0.16 -6.90 17.27 44.97 0.78 -6.12 16 30 C -0.14 -4.38 6.94 22.31 0.15 -4.23 16 31 H 0.13 4.99 6.46 -2.38 -0.02 4.98 16 32 H 0.14 3.79 6.68 -2.38 -0.02 3.77 16 33 H 0.27 13.58 8.31 -92.70 -0.77 12.81 16 34 H 0.11 3.11 6.07 -2.39 -0.01 3.09 16 35 H 0.08 2.89 7.51 -2.38 -0.02 2.87 16 36 H 0.07 2.53 4.56 -2.39 -0.01 2.52 16 37 H 0.02 0.87 7.77 -2.39 -0.02 0.85 16 38 H 0.04 0.88 8.00 -2.39 -0.02 0.86 16 39 H 0.08 1.61 7.66 -2.39 -0.02 1.59 16 40 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.09 0.85 7.69 -2.39 -0.02 0.83 16 44 H 0.11 1.17 8.09 -2.39 -0.02 1.15 16 45 H 0.08 1.44 8.08 -2.39 -0.02 1.42 16 46 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 47 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 48 H 0.13 3.79 8.06 -2.91 -0.02 3.76 16 49 H 0.13 4.02 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -74.19 399.25 4.46 -69.72 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: 0.97 Total: 26.01 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: 5.91 Total: 11.54 kcal Atomic # 7 Polarization: -105.22 SS G_CDS: -5.18 Total: -110.40 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -0.05 Total: -33.81 kcal Atomic # 9 Polarization: -6.90 SS G_CDS: 0.78 Total: -6.12 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Total: -74.19 4.46 -69.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069534971.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.135 kcal (2) G-P(sol) polarization free energy of solvation -74.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds