Wall clock time and date at job start Tue Mar 31 2020 06:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34817 * 117.00120 * 2 1 4 4 O 1.21554 * 120.00049 * 359.97438 * 3 2 1 5 5 C 1.47013 * 120.00159 * 179.97438 * 3 2 1 6 6 C 1.36685 * 125.16403 * 179.97438 * 5 3 2 7 7 C 1.36777 * 114.73079 * 179.76382 * 6 5 3 8 8 C 1.36628 * 114.75365 * 0.50550 * 7 6 5 9 9 C 1.47199 * 125.15765 * 179.78764 * 8 7 6 10 10 O 1.21614 * 120.00011 * 6.86636 * 9 8 7 11 11 N 1.34778 * 119.99854 * 186.86901 * 9 8 7 12 12 C 1.46502 * 119.99907 * 5.71933 * 11 9 8 13 13 C 1.50709 * 109.46591 * 274.42940 * 12 11 9 14 14 H 1.07996 * 120.00117 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99853 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00262 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00013 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46827 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47163 * 119.99745 * 17 15 13 20 20 H 1.48504 * 109.47120 * 239.99827 * 17 15 13 21 21 C 1.46497 * 119.99727 * 185.71148 * 11 9 8 22 22 C 1.50700 * 109.47418 * 269.99772 * 21 11 9 23 23 C 1.38233 * 119.61470 * 94.98120 * 22 21 11 24 24 C 1.38625 * 119.16000 * 179.79253 * 23 22 21 25 25 C 1.38673 * 118.41856 * 0.47568 * 24 23 22 26 26 C 1.38178 * 119.16739 * 359.50322 * 25 24 23 27 27 N 1.31851 * 119.62250 * 275.00542 * 22 21 11 28 28 S 1.75837 * 125.16358 * 0.02586 * 5 3 2 29 29 H 1.09000 * 109.46521 * 300.00073 * 1 2 3 30 30 H 1.08997 * 109.46930 * 60.00293 * 1 2 3 31 31 H 1.09001 * 109.47148 * 180.02562 * 1 2 3 32 32 H 1.08000 * 122.64084 * 0.04426 * 6 5 3 33 33 H 1.08000 * 122.62150 * 180.29768 * 7 6 5 34 34 H 1.08996 * 109.47405 * 34.42544 * 12 11 9 35 35 H 1.08997 * 109.46987 * 154.43861 * 12 11 9 36 36 H 0.96996 * 120.00498 * 180.02562 * 16 15 13 37 37 H 1.09004 * 109.47027 * 150.00286 * 21 11 9 38 38 H 1.08994 * 109.47220 * 30.00509 * 21 11 9 39 39 H 1.07998 * 120.41829 * 359.97438 * 23 22 21 40 40 H 1.08004 * 120.79088 * 180.23025 * 24 23 22 41 41 H 1.08002 * 120.41963 * 179.78243 * 25 24 23 42 42 H 1.08001 * 119.62394 * 180.26199 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0642 1.2012 0.0000 4 8 1.4022 2.2207 -0.0005 5 6 3.5323 1.2782 0.0006 6 6 4.2599 2.4352 0.0001 7 6 5.6162 2.2583 0.0059 8 6 6.0230 0.9540 0.0003 9 6 7.4242 0.5032 0.0002 10 8 8.3231 1.3117 0.1314 11 7 7.7110 -0.8057 -0.1452 12 6 6.6391 -1.7633 -0.4283 13 6 6.0067 -2.2064 0.8659 14 1 6.3669 -1.8136 1.8052 15 6 4.9682 -3.1133 0.8508 16 7 4.5292 -3.5912 -0.2931 17 14 4.1839 -3.6619 2.4549 18 1 4.8547 -2.9819 3.5919 19 1 2.7417 -3.3082 2.4471 20 1 4.3322 -5.1323 2.6009 21 6 9.0946 -1.2706 -0.0204 22 6 9.7610 -1.2332 -1.3715 23 6 10.5100 -0.1291 -1.7333 24 6 11.1225 -0.1065 -2.9767 25 6 10.9499 -1.1957 -3.8174 26 6 10.1871 -2.2644 -3.3869 27 7 9.6227 -2.2536 -2.1949 28 16 4.6188 -0.1043 0.0006 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.8001 3.4125 0.0000 33 1 6.3111 3.0850 0.0110 34 1 5.8855 -1.2897 -1.0574 35 1 7.0526 -2.6290 -0.9456 36 1 3.7984 -4.2289 -0.3038 37 1 9.1017 -2.2921 0.3600 38 1 9.6349 -0.6224 0.6694 39 1 10.6190 0.7040 -1.0548 40 1 11.7167 0.7411 -3.2850 41 1 11.4096 -1.2106 -4.7946 42 1 10.0513 -3.1184 -4.0339 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069566856.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:28 Heat of formation + Delta-G solvation = -40.961767 kcal Electronic energy + Delta-G solvation = -29600.733568 eV Core-core repulsion = 25445.252432 eV Total energy + Delta-G solvation = -4155.481136 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 360.098 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.14199 -39.91293 -39.00876 -36.84529 -35.85724 -35.24253 -33.25131 -32.26291 -31.68681 -29.81343 -28.03981 -27.59847 -26.43436 -24.62486 -23.46730 -23.10183 -22.13573 -21.40396 -19.97391 -18.51176 -17.57885 -17.12923 -16.87584 -16.54743 -16.28881 -16.04607 -15.80029 -15.40388 -15.30970 -14.74115 -14.62801 -14.35523 -13.91130 -13.47442 -13.25727 -13.11264 -12.95554 -12.80457 -12.64681 -12.49226 -12.35343 -11.96335 -11.89125 -11.63276 -11.56985 -11.46864 -11.15060 -10.93839 -10.57468 -10.48702 -10.35696 -10.07292 -9.71474 -9.50558 -9.44239 -9.22569 -8.88471 -8.81279 -8.33158 -8.01049 -7.72281 -6.52108 -4.53218 0.67631 1.23873 1.46259 2.30196 2.44883 2.70403 3.02227 3.09801 3.18454 3.20998 3.33974 3.58501 3.79075 4.08519 4.17571 4.52929 4.84308 4.92520 4.97997 5.19683 5.22893 5.24660 5.28076 5.31091 5.34075 5.64854 5.71276 5.75372 5.82131 5.91697 5.95805 6.08647 6.28495 6.33390 6.39243 6.42517 6.53634 6.75608 6.83672 6.86402 6.89379 7.22139 7.43196 7.60163 7.99651 8.05151 8.23660 8.44609 8.72275 9.02197 10.50356 Molecular weight = 360.10amu Principal moments of inertia in cm(-1) A = 0.010412 B = 0.003909 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.577762 B = 7161.680276 C = 8673.177916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.350 6.350 3 C 0.543 3.457 4 O -0.519 6.519 5 C -0.351 4.351 6 C -0.081 4.081 7 C -0.102 4.102 8 C -0.269 4.269 9 C 0.588 3.412 10 O -0.556 6.556 11 N -0.587 5.587 12 C 0.220 3.780 13 C -0.533 4.533 14 H 0.076 0.924 15 C 0.079 3.921 16 N -0.857 5.857 17 Si 0.890 3.110 18 H -0.265 1.265 19 H -0.273 1.273 20 H -0.276 1.276 21 C 0.172 3.828 22 C 0.116 3.884 23 C -0.148 4.148 24 C -0.083 4.083 25 C -0.179 4.179 26 C 0.094 3.906 27 N -0.465 5.465 28 S 0.456 5.544 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.101 0.899 32 H 0.134 0.866 33 H 0.142 0.858 34 H 0.041 0.959 35 H 0.066 0.934 36 H 0.275 0.725 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.140 0.860 40 H 0.130 0.870 41 H 0.129 0.871 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.738 2.606 -3.530 5.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.267 6.267 3 C 0.389 3.611 4 O -0.410 6.410 5 C -0.469 4.469 6 C -0.115 4.115 7 C -0.135 4.135 8 C -0.392 4.392 9 C 0.376 3.624 10 O -0.438 6.438 11 N -0.317 5.317 12 C 0.098 3.902 13 C -0.579 4.579 14 H 0.094 0.906 15 C -0.131 4.131 16 N -0.491 5.491 17 Si 0.715 3.285 18 H -0.189 1.189 19 H -0.199 1.199 20 H -0.202 1.202 21 C 0.048 3.952 22 C -0.023 4.023 23 C -0.169 4.169 24 C -0.110 4.110 25 C -0.200 4.200 26 C -0.063 4.063 27 N -0.174 5.174 28 S 0.740 5.260 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.119 0.881 32 H 0.151 0.849 33 H 0.160 0.840 34 H 0.058 0.942 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.119 0.881 38 H 0.111 0.889 39 H 0.157 0.843 40 H 0.148 0.852 41 H 0.147 0.853 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.003 0.887 -3.319 4.563 hybrid contribution -0.096 1.980 0.386 2.020 sum 2.907 2.867 -2.932 5.027 Atomic orbital electron populations 1.23225 0.76507 1.03586 1.02194 1.86667 1.23109 1.32428 1.84460 1.20081 0.87746 0.81215 0.72086 1.90777 1.66707 1.36110 1.47446 1.25562 0.95551 1.06362 1.19471 1.20091 0.92334 0.97690 1.01382 1.20089 0.94769 0.95639 1.03016 1.25176 0.98915 0.99245 1.15891 1.17179 0.86647 0.82173 0.76360 1.90670 1.47154 1.53525 1.52444 1.47998 1.08008 1.07068 1.68587 1.19822 0.84361 0.88959 0.97079 1.21670 1.17263 1.25407 0.93532 0.90624 1.24997 0.96153 0.94737 0.97177 1.69914 1.25767 1.28385 1.25084 0.86512 0.79791 0.79075 0.83093 1.18945 1.19862 1.20176 1.20185 0.81900 1.02227 0.90862 1.21817 0.93983 0.89628 0.96867 1.22147 0.97808 0.99381 0.97549 1.21562 0.97681 0.97993 0.93719 1.22101 1.01497 0.95482 1.00871 1.22751 0.93181 0.97656 0.92751 1.67565 1.18718 1.27475 1.03678 1.87661 0.88213 0.95507 1.54649 0.92113 0.92036 0.88099 0.84865 0.84025 0.94185 0.91562 0.91532 0.88128 0.88949 0.84254 0.85215 0.85256 0.82994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.57 101.05 1.07 1.59 16 2 O -0.35 -6.37 10.41 -40.81 -0.43 -6.79 16 3 C 0.54 10.56 7.94 34.29 0.27 10.83 16 4 O -0.52 -10.53 16.61 -19.31 -0.32 -10.85 16 5 C -0.35 -6.86 6.46 -36.59 -0.24 -7.10 16 6 C -0.08 -1.46 9.88 -40.67 -0.40 -1.87 16 7 C -0.10 -1.86 9.89 -40.69 -0.40 -2.26 16 8 C -0.27 -5.42 6.20 -36.53 -0.23 -5.65 16 9 C 0.59 12.18 7.61 -12.62 -0.10 12.08 16 10 O -0.56 -11.83 16.17 5.26 0.09 -11.75 16 11 N -0.59 -11.76 2.45 -177.79 -0.44 -12.20 16 12 C 0.22 4.81 4.71 -5.19 -0.02 4.78 16 13 C -0.53 -12.13 6.58 -34.44 -0.23 -12.36 16 14 H 0.08 1.76 7.81 -52.49 -0.41 1.35 16 15 C 0.08 1.82 4.84 -17.82 -0.09 1.74 16 16 N -0.86 -20.58 13.29 55.43 0.74 -19.85 16 17 Si 0.89 18.49 29.54 -169.99 -5.02 13.47 16 18 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 19 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 20 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 21 C 0.17 3.01 5.65 -5.20 -0.03 2.98 16 22 C 0.12 1.94 6.36 -82.59 -0.53 1.42 16 23 C -0.15 -2.21 9.70 -39.44 -0.38 -2.60 16 24 C -0.08 -1.04 10.18 -39.28 -0.40 -1.44 16 25 C -0.18 -2.11 10.11 -39.44 -0.40 -2.51 16 26 C 0.09 1.29 11.18 -17.55 -0.20 1.09 16 27 N -0.47 -7.89 10.27 -9.47 -0.10 -7.99 16 28 S 0.46 9.37 15.53 -107.50 -1.67 7.70 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.13 2.19 8.04 -52.49 -0.42 1.76 16 33 H 0.14 2.37 8.05 -52.49 -0.42 1.95 16 34 H 0.04 0.93 4.95 -26.03 -0.13 0.80 16 35 H 0.07 1.55 8.04 -51.93 -0.42 1.14 16 36 H 0.27 6.28 8.31 -40.82 -0.34 5.94 16 37 H 0.10 1.73 8.07 -51.93 -0.42 1.31 16 38 H 0.09 1.50 7.41 -51.93 -0.38 1.12 16 39 H 0.14 2.05 7.78 -52.49 -0.41 1.64 16 40 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 41 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 42 H 0.15 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 380.50 15.07 5.73 5.73 Total: -1.00 -28.03 380.50 -8.39 -36.42 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -4.68 Total: 5.37 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -2.29 Total: 0.73 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.20 Total: -40.03 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -0.66 Total: -29.38 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.02 Total: 13.47 kcal Atomic # 16 Polarization: 9.37 SS G_CDS: -1.67 Total: 7.70 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -28.03 -8.39 -36.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069566856.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.544 kcal (2) G-P(sol) polarization free energy of solvation -28.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds