Wall clock time and date at job start Tue Mar 31 2020 06:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34817 * 117.00120 * 2 1 4 4 O 1.21554 * 120.00049 * 359.97438 * 3 2 1 5 5 C 1.47013 * 120.00159 * 179.97438 * 3 2 1 6 6 C 1.36685 * 125.16403 * 179.97438 * 5 3 2 7 7 C 1.36777 * 114.73079 * 179.76382 * 6 5 3 8 8 C 1.36628 * 114.75365 * 0.50550 * 7 6 5 9 9 C 1.47199 * 125.15765 * 179.78764 * 8 7 6 10 10 O 1.21614 * 120.00011 * 6.86636 * 9 8 7 11 11 N 1.34778 * 119.99854 * 186.86901 * 9 8 7 12 12 C 1.46502 * 119.99907 * 5.71933 * 11 9 8 13 13 C 1.50709 * 109.46591 * 274.42940 * 12 11 9 14 14 H 1.07996 * 120.00117 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99853 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00262 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00013 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46827 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47163 * 119.99745 * 17 15 13 20 20 H 1.48504 * 109.47120 * 239.99827 * 17 15 13 21 21 C 1.46497 * 119.99727 * 185.71148 * 11 9 8 22 22 C 1.50700 * 109.47418 * 269.99772 * 21 11 9 23 23 C 1.38233 * 119.61470 * 94.98120 * 22 21 11 24 24 C 1.38625 * 119.16000 * 179.79253 * 23 22 21 25 25 C 1.38673 * 118.41856 * 0.47568 * 24 23 22 26 26 C 1.38178 * 119.16739 * 359.50322 * 25 24 23 27 27 N 1.31851 * 119.62250 * 275.00542 * 22 21 11 28 28 S 1.75837 * 125.16358 * 0.02586 * 5 3 2 29 29 H 1.09000 * 109.46521 * 300.00073 * 1 2 3 30 30 H 1.08997 * 109.46930 * 60.00293 * 1 2 3 31 31 H 1.09001 * 109.47148 * 180.02562 * 1 2 3 32 32 H 1.08000 * 122.64084 * 0.04426 * 6 5 3 33 33 H 1.08000 * 122.62150 * 180.29768 * 7 6 5 34 34 H 1.08996 * 109.47405 * 34.42544 * 12 11 9 35 35 H 1.08997 * 109.46987 * 154.43861 * 12 11 9 36 36 H 0.96996 * 120.00498 * 180.02562 * 16 15 13 37 37 H 1.09004 * 109.47027 * 150.00286 * 21 11 9 38 38 H 1.08994 * 109.47220 * 30.00509 * 21 11 9 39 39 H 1.07998 * 120.41829 * 359.97438 * 23 22 21 40 40 H 1.08004 * 120.79088 * 180.23025 * 24 23 22 41 41 H 1.08002 * 120.41963 * 179.78243 * 25 24 23 42 42 H 1.08001 * 119.62394 * 180.26199 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0642 1.2012 0.0000 4 8 1.4022 2.2207 -0.0005 5 6 3.5323 1.2782 0.0006 6 6 4.2599 2.4352 0.0001 7 6 5.6162 2.2583 0.0059 8 6 6.0230 0.9540 0.0003 9 6 7.4242 0.5032 0.0002 10 8 8.3231 1.3117 0.1314 11 7 7.7110 -0.8057 -0.1452 12 6 6.6391 -1.7633 -0.4283 13 6 6.0067 -2.2064 0.8659 14 1 6.3669 -1.8136 1.8052 15 6 4.9682 -3.1133 0.8508 16 7 4.5292 -3.5912 -0.2931 17 14 4.1839 -3.6619 2.4549 18 1 4.8547 -2.9819 3.5919 19 1 2.7417 -3.3082 2.4471 20 1 4.3322 -5.1323 2.6009 21 6 9.0946 -1.2706 -0.0204 22 6 9.7610 -1.2332 -1.3715 23 6 10.5100 -0.1291 -1.7333 24 6 11.1225 -0.1065 -2.9767 25 6 10.9499 -1.1957 -3.8174 26 6 10.1871 -2.2644 -3.3869 27 7 9.6227 -2.2536 -2.1949 28 16 4.6188 -0.1043 0.0006 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.8001 3.4125 0.0000 33 1 6.3111 3.0850 0.0110 34 1 5.8855 -1.2897 -1.0574 35 1 7.0526 -2.6290 -0.9456 36 1 3.7984 -4.2289 -0.3038 37 1 9.1017 -2.2921 0.3600 38 1 9.6349 -0.6224 0.6694 39 1 10.6190 0.7040 -1.0548 40 1 11.7167 0.7411 -3.2850 41 1 11.4096 -1.2106 -4.7946 42 1 10.0513 -3.1184 -4.0339 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069566856.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:27 Heat of formation + Delta-G solvation = -55.162158 kcal Electronic energy + Delta-G solvation = -29601.349343 eV Core-core repulsion = 25445.252432 eV Total energy + Delta-G solvation = -4156.096911 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 360.098 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.39967 -41.36274 -40.44977 -38.33703 -37.33984 -36.85088 -34.88569 -33.39351 -32.98085 -31.25599 -29.57984 -28.96565 -27.78780 -26.08316 -25.02966 -24.31798 -23.37944 -22.83813 -21.46516 -19.99384 -19.13349 -18.79897 -18.34629 -17.88915 -17.62994 -17.42661 -17.00698 -16.87189 -16.53526 -16.32442 -16.19309 -15.78707 -15.32655 -14.72475 -14.55920 -14.40677 -14.31433 -14.21403 -14.18013 -13.93866 -13.86076 -13.36453 -13.20111 -13.10502 -12.98057 -12.81410 -12.60814 -12.56183 -12.15756 -11.89785 -11.86718 -11.78134 -11.13582 -11.01336 -10.77753 -10.60063 -10.40073 -9.96314 -9.89577 -9.56927 -9.31797 -8.28545 -6.35077 -0.86543 0.14820 0.41676 0.72299 0.93688 1.14761 1.43550 1.47796 1.54999 1.69414 1.80807 2.11925 2.22080 2.39427 2.99031 3.05853 3.38649 3.62756 3.85958 3.89474 4.05452 4.21681 4.24159 4.28431 4.29019 4.31419 4.45456 4.48918 4.59711 4.63065 4.68911 4.78468 4.90363 4.97704 5.07070 5.10783 5.25501 5.28069 5.30217 5.38821 5.53707 5.66948 5.83654 5.84401 6.36112 6.58847 6.67252 7.09071 7.12924 7.25110 8.74800 Molecular weight = 360.10amu Principal moments of inertia in cm(-1) A = 0.010412 B = 0.003909 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2688.577762 B = 7161.680276 C = 8673.177916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.365 6.365 3 C 0.544 3.456 4 O -0.530 6.530 5 C -0.351 4.351 6 C -0.070 4.070 7 C -0.088 4.088 8 C -0.280 4.280 9 C 0.583 3.417 10 O -0.565 6.565 11 N -0.586 5.586 12 C 0.237 3.763 13 C -0.538 4.538 14 H 0.066 0.934 15 C 0.053 3.947 16 N -0.884 5.884 17 Si 0.930 3.070 18 H -0.267 1.267 19 H -0.271 1.271 20 H -0.274 1.274 21 C 0.171 3.829 22 C 0.092 3.908 23 C -0.159 4.159 24 C -0.081 4.081 25 C -0.164 4.164 26 C 0.079 3.921 27 N -0.502 5.502 28 S 0.415 5.585 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.128 0.872 32 H 0.157 0.843 33 H 0.163 0.837 34 H 0.033 0.967 35 H 0.044 0.956 36 H 0.276 0.724 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.136 0.864 40 H 0.164 0.836 41 H 0.170 0.830 42 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.997 3.872 -4.411 7.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.282 6.282 3 C 0.390 3.610 4 O -0.423 6.423 5 C -0.470 4.470 6 C -0.104 4.104 7 C -0.122 4.122 8 C -0.403 4.403 9 C 0.372 3.628 10 O -0.448 6.448 11 N -0.316 5.316 12 C 0.114 3.886 13 C -0.583 4.583 14 H 0.084 0.916 15 C -0.154 4.154 16 N -0.519 5.519 17 Si 0.755 3.245 18 H -0.191 1.191 19 H -0.196 1.196 20 H -0.199 1.199 21 C 0.048 3.952 22 C -0.046 4.046 23 C -0.180 4.180 24 C -0.106 4.106 25 C -0.184 4.184 26 C -0.078 4.078 27 N -0.212 5.212 28 S 0.698 5.302 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.146 0.854 32 H 0.175 0.825 33 H 0.180 0.820 34 H 0.050 0.950 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.111 0.889 38 H 0.117 0.883 39 H 0.154 0.846 40 H 0.182 0.818 41 H 0.188 0.812 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 3.281 2.114 -4.186 5.724 hybrid contribution -0.185 1.697 0.555 1.795 sum 3.096 3.811 -3.632 6.107 Atomic orbital electron populations 1.23619 0.73918 1.05752 1.03105 1.86653 1.25772 1.31761 1.83989 1.20031 0.87631 0.81503 0.71859 1.90764 1.66880 1.36450 1.48158 1.25634 0.95911 1.06096 1.19380 1.20362 0.92080 0.98288 0.99657 1.20366 0.95272 0.95420 1.01106 1.25280 0.98483 0.99872 1.16703 1.17294 0.86885 0.82242 0.76366 1.90650 1.47390 1.53574 1.53188 1.48002 1.08704 1.06718 1.68144 1.19474 0.84370 0.88337 0.96414 1.21613 1.17568 1.25831 0.93280 0.91603 1.25419 0.96348 0.94713 0.98908 1.69970 1.26462 1.29229 1.26268 0.85890 0.79189 0.78718 0.80714 1.19101 1.19558 1.19902 1.20252 0.80839 1.01789 0.92333 1.21600 0.95584 0.90822 0.96594 1.22193 0.98244 0.98647 0.98888 1.21986 0.96951 0.99217 0.92495 1.22522 0.99735 0.93987 1.02120 1.23268 0.93169 0.99319 0.92040 1.67483 1.20271 1.28231 1.05247 1.87757 0.89271 0.96596 1.56613 0.91274 0.91086 0.85423 0.82503 0.81953 0.95048 0.93837 0.91428 0.88889 0.88276 0.84597 0.81829 0.81202 0.80805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.57 113.37 1.20 1.92 16 2 O -0.37 -12.95 10.41 -57.29 -0.60 -13.54 16 3 C 0.54 20.56 7.94 70.12 0.56 21.12 16 4 O -0.53 -20.65 16.61 19.66 0.33 -20.32 16 5 C -0.35 -13.44 6.46 24.21 0.16 -13.29 16 6 C -0.07 -2.40 9.88 21.56 0.21 -2.18 16 7 C -0.09 -3.07 9.89 21.55 0.21 -2.86 16 8 C -0.28 -11.26 6.20 24.25 0.15 -11.11 16 9 C 0.58 24.41 7.61 86.60 0.66 25.07 16 10 O -0.57 -23.95 16.17 -4.08 -0.07 -24.01 16 11 N -0.59 -24.28 2.45 -834.66 -2.04 -26.33 16 12 C 0.24 10.79 4.71 85.64 0.40 11.20 16 13 C -0.54 -25.33 6.58 25.60 0.17 -25.16 16 14 H 0.07 3.17 7.81 -2.91 -0.02 3.15 16 15 C 0.05 2.50 4.84 84.65 0.41 2.91 16 16 N -0.88 -43.47 13.29 21.45 0.28 -43.19 16 17 Si 0.93 38.15 29.54 68.60 2.03 40.18 16 18 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 19 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 20 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 21 C 0.17 6.23 5.65 85.63 0.48 6.71 16 22 C 0.09 3.14 6.36 42.55 0.27 3.41 16 23 C -0.16 -4.65 9.70 22.36 0.22 -4.44 16 24 C -0.08 -1.80 10.18 22.47 0.23 -1.57 16 25 C -0.16 -3.38 10.11 22.36 0.23 -3.15 16 26 C 0.08 2.08 11.18 84.67 0.95 3.03 16 27 N -0.50 -17.30 10.27 -183.88 -1.89 -19.19 16 28 S 0.42 17.25 15.53 -56.49 -0.88 16.37 16 29 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.16 4.67 8.04 -2.91 -0.02 4.65 16 33 H 0.16 5.02 8.05 -2.91 -0.02 5.00 16 34 H 0.03 1.53 4.95 -18.86 -0.09 1.44 16 35 H 0.04 2.16 8.04 -2.39 -0.02 2.14 16 36 H 0.28 12.86 8.31 -92.71 -0.77 12.09 16 37 H 0.09 3.42 8.07 -2.38 -0.02 3.40 16 38 H 0.10 3.36 7.41 -2.39 -0.02 3.34 16 39 H 0.14 3.97 7.78 -2.91 -0.02 3.95 16 40 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 41 H 0.17 2.10 8.06 -2.91 -0.02 2.07 16 42 H 0.17 3.55 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -60.92 380.50 4.65 -56.28 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: 0.98 Total: 22.15 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 6.50 Total: 11.60 kcal Atomic # 7 Polarization: -85.05 SS G_CDS: -3.65 Total: -88.70 kcal Atomic # 8 Polarization: -57.54 SS G_CDS: -0.34 Total: -57.88 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 2.03 Total: 40.18 kcal Atomic # 16 Polarization: 17.25 SS G_CDS: -0.88 Total: 16.37 kcal Total: -60.92 4.65 -56.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069566856.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.117 kcal (2) G-P(sol) polarization free energy of solvation -60.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds