Wall clock time and date at job start Tue Mar 31 2020 06:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99491 * 2 1 4 4 H 1.48502 * 109.46658 * 269.99487 * 3 2 1 5 5 H 1.48496 * 109.47417 * 29.99769 * 3 2 1 6 6 H 1.48500 * 109.47126 * 150.00076 * 3 2 1 7 7 C 1.37875 * 120.00566 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00489 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99874 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47175 * 179.97438 * 9 7 2 11 11 O 1.42894 * 109.47184 * 179.97438 * 10 9 7 12 12 C 1.35985 * 117.00127 * 180.02562 * 11 10 9 13 13 C 1.38793 * 120.49800 * 0.02562 * 12 11 10 14 14 C 1.38775 * 118.44899 * 179.97438 * 13 12 11 15 15 C 1.38081 * 119.35675 * 359.97438 * 14 13 12 16 16 N 1.31960 * 120.94943 * 359.97438 * 15 14 13 17 17 C 1.32272 * 121.69603 * 0.02562 * 16 15 14 18 18 N 1.39573 * 119.72873 * 180.02562 * 17 16 15 19 19 C 1.34783 * 120.00065 * 359.97438 * 18 17 16 20 20 O 1.21283 * 119.99880 * 359.97438 * 19 18 17 21 21 C 1.50702 * 120.00113 * 179.97438 * 19 18 17 22 22 C 1.50699 * 109.47196 * 180.02562 * 21 19 18 23 23 C 1.38228 * 120.00785 * 99.99919 * 22 21 19 24 24 C 1.38217 * 120.01423 * 179.97438 * 23 22 21 25 25 C 1.38266 * 120.02680 * 0.04615 * 24 23 22 26 26 C 1.38191 * 120.00983 * 359.97438 * 25 24 23 27 27 C 1.38335 * 120.00326 * 279.72663 * 22 21 19 28 28 Cl 1.73599 * 120.01365 * 359.97438 * 27 22 21 29 29 H 0.96995 * 120.00545 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.47079 * 59.99501 * 9 7 2 31 31 H 1.09001 * 109.46724 * 299.99835 * 9 7 2 32 32 H 1.09004 * 109.47159 * 59.99997 * 10 9 7 33 33 H 1.09001 * 109.47525 * 299.99793 * 10 9 7 34 34 H 1.08002 * 120.77284 * 0.24595 * 13 12 11 35 35 H 1.08001 * 120.31757 * 180.02562 * 14 13 12 36 36 H 1.07996 * 119.53007 * 179.97438 * 15 14 13 37 37 H 0.97005 * 120.00328 * 179.97438 * 18 17 16 38 38 H 1.09005 * 109.47030 * 300.00534 * 21 19 18 39 39 H 1.08999 * 109.47075 * 59.99585 * 21 19 18 40 40 H 1.08004 * 119.99696 * 0.02562 * 23 22 21 41 41 H 1.07999 * 119.98968 * 180.02562 * 24 23 22 42 42 H 1.07999 * 119.99415 * 179.97438 * 25 24 23 43 43 H 1.08002 * 120.00782 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2455 -3.6620 0.0005 11 8 1.5311 -4.8995 0.0011 12 6 2.2718 -6.0399 0.0018 13 6 3.6584 -5.9793 0.0023 14 6 4.3722 -7.1694 0.0035 15 6 3.6883 -8.3689 0.0046 16 7 2.3690 -8.3980 0.0050 17 6 1.6494 -7.2881 0.0040 18 7 0.2559 -7.3667 0.0051 19 6 -0.3512 -8.5700 0.0067 20 8 0.3134 -9.5845 0.0067 21 6 -1.8559 -8.6549 0.0084 22 6 -2.2774 -10.1017 0.0106 23 6 -2.6690 -10.7058 1.1906 24 6 -3.0562 -12.0327 1.1927 25 6 -3.0511 -12.7568 0.0148 26 6 -2.6594 -12.1539 -1.1654 27 6 -2.2779 -10.8239 -1.1693 28 17 -1.7936 -10.0636 -2.6529 29 1 -0.4851 0.8400 0.0004 30 1 0.6248 -2.5571 -0.8897 31 1 0.6242 -2.5567 0.8903 32 1 2.8721 -3.6042 0.8905 33 1 2.8721 -3.6043 -0.8895 34 1 4.1699 -5.0281 0.0063 35 1 5.4521 -7.1574 0.0044 36 1 4.2409 -9.2968 0.0051 37 1 -0.2757 -6.5553 0.0047 38 1 -2.2466 -8.1615 0.8984 39 1 -2.2485 -8.1629 -0.8815 40 1 -2.6733 -10.1408 2.1110 41 1 -3.3625 -12.5042 2.1148 42 1 -3.3533 -13.7936 0.0171 43 1 -2.6558 -12.7195 -2.0855 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069568103.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:19 Heat of formation + Delta-G solvation = -33.018952 kcal Electronic energy + Delta-G solvation = -28185.678699 eV Core-core repulsion = 24028.498283 eV Total energy + Delta-G solvation = -4157.180416 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 360.103 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.06175 -40.86399 -39.78841 -39.02740 -37.41391 -35.94625 -35.43993 -34.01675 -32.88388 -32.25128 -31.65516 -30.56148 -28.58500 -27.16657 -25.08723 -24.07020 -23.66517 -23.07895 -22.42774 -21.26477 -19.64347 -18.91818 -18.32645 -18.05933 -17.85879 -17.24532 -16.99434 -16.90400 -16.46202 -16.36181 -15.95038 -15.81545 -15.24485 -15.08353 -14.83530 -14.75452 -14.39152 -14.29635 -14.09629 -13.94508 -13.65382 -13.30130 -13.14022 -12.80709 -12.74843 -12.61820 -12.47169 -12.44093 -12.22564 -11.84086 -11.73768 -11.70046 -11.63265 -11.44249 -11.33451 -10.60679 -10.40232 -10.21268 -9.84699 -9.62170 -8.85259 -8.25492 -6.37925 0.09571 0.18086 0.29022 0.30615 1.17940 1.42550 1.43428 1.54331 1.66545 1.86358 2.11557 2.44434 2.70151 2.88014 3.09739 3.43230 3.52251 3.74318 3.79045 3.85746 4.07828 4.08554 4.18559 4.27209 4.29355 4.33544 4.40980 4.45248 4.46906 4.57240 4.74698 4.76616 4.95211 4.98839 5.13638 5.27145 5.28629 5.31471 5.39597 5.48238 5.50836 5.53433 5.73733 5.88707 6.08164 6.20814 6.33693 6.76879 6.94972 7.27755 7.32031 8.87063 Molecular weight = 360.10amu Principal moments of inertia in cm(-1) A = 0.012800 B = 0.002140 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.958776 B =13082.861960 C =14305.125381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.004 3.996 3 Si 0.970 3.030 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.544 4.544 8 H 0.070 0.930 9 C 0.030 3.970 10 C 0.084 3.916 11 O -0.328 6.328 12 C 0.040 3.960 13 C -0.149 4.149 14 C -0.146 4.146 15 C 0.072 3.928 16 N -0.472 5.472 17 C 0.313 3.687 18 N -0.654 5.654 19 C 0.508 3.492 20 O -0.503 6.503 21 C -0.103 4.103 22 C -0.075 4.075 23 C -0.105 4.105 24 C -0.116 4.116 25 C -0.107 4.107 26 C -0.123 4.123 27 C -0.038 4.038 28 Cl -0.083 7.083 29 H 0.266 0.734 30 H 0.001 0.999 31 H 0.003 0.997 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.156 0.844 35 H 0.175 0.825 36 H 0.184 0.816 37 H 0.428 0.572 38 H 0.137 0.863 39 H 0.116 0.884 40 H 0.148 0.852 41 H 0.157 0.843 42 H 0.159 0.841 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.670 -23.883 1.294 24.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.794 3.206 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.582 4.582 8 H 0.089 0.911 9 C -0.007 4.007 10 C 0.010 3.990 11 O -0.241 6.241 12 C -0.010 4.010 13 C -0.176 4.176 14 C -0.167 4.167 15 C -0.084 4.084 16 N -0.187 5.187 17 C 0.081 3.919 18 N -0.302 5.302 19 C 0.295 3.705 20 O -0.374 6.374 21 C -0.142 4.142 22 C -0.077 4.077 23 C -0.123 4.123 24 C -0.134 4.134 25 C -0.125 4.125 26 C -0.142 4.142 27 C -0.064 4.064 28 Cl -0.055 7.055 29 H 0.075 0.925 30 H 0.019 0.981 31 H 0.021 0.979 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.174 0.826 35 H 0.192 0.808 36 H 0.201 0.799 37 H 0.267 0.733 38 H 0.155 0.845 39 H 0.134 0.866 40 H 0.165 0.835 41 H 0.175 0.825 42 H 0.177 0.823 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.035 -25.232 1.160 25.440 hybrid contribution 0.556 2.517 -0.399 2.608 sum -2.479 -22.715 0.761 22.863 Atomic orbital electron populations 1.70092 1.07865 1.28119 1.50693 1.25957 0.95777 1.03426 0.94356 0.85370 0.78684 0.78017 0.78526 1.19795 1.20878 1.18366 1.21396 0.93852 0.91057 1.51892 0.91139 1.18944 0.94513 0.90956 0.96313 1.22946 0.95622 0.79658 1.00820 1.86025 1.36595 1.12996 1.88530 1.19760 0.92134 0.86273 1.02861 1.21896 0.91508 1.01787 1.02403 1.22259 1.03022 0.91087 1.00316 1.23030 0.88195 0.99685 0.97520 1.67683 1.09381 1.27174 1.14487 1.18015 0.85674 0.86964 1.01219 1.43591 1.03471 1.10909 1.72258 1.21109 0.91065 0.82476 0.75816 1.90773 1.66739 1.34729 1.45206 1.20773 0.90248 0.95372 1.07842 1.19290 1.00611 0.94967 0.92798 1.21321 0.98014 0.96127 0.96843 1.21597 0.98419 0.93728 0.99628 1.21496 0.98251 1.01401 0.91346 1.21289 0.99892 0.92283 1.00711 1.21036 1.03494 0.94809 0.87110 1.98367 1.90518 1.82069 1.34510 0.92522 0.98052 0.97881 0.91801 0.91934 0.82623 0.80805 0.79898 0.73344 0.84491 0.86570 0.83454 0.82545 0.82297 0.83974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.27 13.29 21.45 0.28 -53.98 16 2 C 0.00 0.20 5.46 84.65 0.46 0.66 16 3 Si 0.97 41.99 29.54 68.60 2.03 44.02 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 5 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 7 C -0.54 -29.05 9.11 25.60 0.23 -28.82 16 8 H 0.07 3.51 7.74 -2.91 -0.02 3.48 16 9 C 0.03 1.51 5.34 29.85 0.16 1.67 16 10 C 0.08 3.29 4.70 71.98 0.34 3.63 16 11 O -0.33 -12.24 9.39 -93.38 -0.88 -13.12 16 12 C 0.04 1.34 6.72 22.70 0.15 1.50 16 13 C -0.15 -4.12 9.14 22.53 0.21 -3.92 16 14 C -0.15 -3.27 10.10 22.36 0.23 -3.05 16 15 C 0.07 1.86 11.17 84.64 0.95 2.81 16 16 N -0.47 -15.76 7.88 -192.59 -1.52 -17.27 16 17 C 0.31 10.53 7.45 132.99 0.99 11.52 16 18 N -0.65 -19.62 5.39 -308.02 -1.66 -21.28 16 19 C 0.51 14.70 7.58 87.66 0.66 15.36 16 20 O -0.50 -17.87 14.21 -3.04 -0.04 -17.91 16 21 C -0.10 -2.15 5.30 29.10 0.15 -1.99 16 22 C -0.08 -1.63 4.42 -19.84 -0.09 -1.72 16 23 C -0.10 -1.82 9.67 22.26 0.22 -1.60 16 24 C -0.12 -1.62 10.05 22.27 0.22 -1.40 16 25 C -0.11 -1.51 10.05 22.27 0.22 -1.29 16 26 C -0.12 -2.27 9.83 22.29 0.22 -2.05 16 27 C -0.04 -0.87 6.21 22.32 0.14 -0.73 16 28 Cl -0.08 -2.07 27.34 -2.72 -0.07 -2.14 16 29 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 30 H 0.00 0.06 8.14 -2.38 -0.02 0.04 16 31 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 32 H 0.06 2.34 7.69 -2.38 -0.02 2.32 16 33 H 0.06 2.30 7.70 -2.39 -0.02 2.28 16 34 H 0.16 3.87 6.44 -2.91 -0.02 3.85 16 35 H 0.17 2.46 8.06 -2.91 -0.02 2.44 16 36 H 0.18 3.50 8.06 -2.91 -0.02 3.47 16 37 H 0.43 11.53 8.05 -92.70 -0.75 10.78 16 38 H 0.14 2.02 8.00 -2.38 -0.02 2.01 16 39 H 0.12 2.26 7.34 -2.39 -0.02 2.24 16 40 H 0.15 1.94 8.04 -2.91 -0.02 1.92 16 41 H 0.16 1.24 8.06 -2.91 -0.02 1.22 16 42 H 0.16 1.24 8.06 -2.91 -0.02 1.21 16 43 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -73.70 386.52 3.91 -69.79 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: 0.31 Total: 21.32 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: 5.46 Total: -9.41 kcal Atomic # 7 Polarization: -89.64 SS G_CDS: -2.89 Total: -92.53 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -0.92 Total: -31.03 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Atomic # 17 Polarization: -2.07 SS G_CDS: -0.07 Total: -2.14 kcal Total: -73.70 3.91 -69.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069568103.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.769 kcal (2) G-P(sol) polarization free energy of solvation -73.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds