Wall clock time and date at job start Tue Mar 31 2020 07:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47239 * 2 1 4 4 C 1.53008 * 109.46965 * 119.99636 * 2 1 3 5 5 C 1.52997 * 117.50108 * 8.62082 * 4 2 1 6 6 C 1.53000 * 117.49764 * 299.99536 * 4 2 1 7 7 N 1.46497 * 109.47431 * 239.99556 * 2 1 3 8 8 C 1.46505 * 119.99889 * 300.00550 * 7 2 1 9 9 C 1.50704 * 109.46681 * 274.99445 * 8 7 2 10 10 H 1.07993 * 120.00129 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99520 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00601 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99780 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.46718 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.47189 * 119.99769 * 13 11 9 16 16 H 1.48493 * 109.46968 * 240.00527 * 13 11 9 17 17 S 1.65593 * 120.00440 * 119.99728 * 7 2 1 18 18 O 1.42108 * 106.39889 * 336.46762 * 17 7 2 19 19 O 1.42100 * 106.40810 * 203.54589 * 17 7 2 20 20 C 1.76199 * 107.21782 * 90.00149 * 17 7 2 21 21 C 1.38244 * 119.98267 * 114.98041 * 20 17 7 22 22 C 1.38185 * 120.04308 * 180.02562 * 21 20 17 23 23 C 1.38485 * 119.99760 * 359.97438 * 22 21 20 24 24 F 1.35106 * 120.01880 * 180.02562 * 23 22 21 25 25 C 1.38418 * 119.96235 * 359.78675 * 23 22 21 26 26 C 1.38332 * 119.96484 * 0.49104 * 25 23 22 27 27 Cl 1.73599 * 120.00615 * 179.74436 * 26 25 23 28 28 H 1.09001 * 109.46869 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47125 * 300.00692 * 1 2 3 30 30 H 1.08997 * 109.46952 * 60.00151 * 1 2 3 31 31 H 1.09002 * 115.54488 * 154.33167 * 4 2 1 32 32 H 1.09004 * 117.49435 * 359.97438 * 5 4 2 33 33 H 1.08999 * 117.49895 * 145.01948 * 5 4 2 34 34 H 1.08997 * 117.50091 * 214.98017 * 6 4 2 35 35 H 1.09003 * 117.50120 * 359.97438 * 6 4 2 36 36 H 1.08999 * 109.47344 * 34.98936 * 8 7 2 37 37 H 1.08994 * 109.47096 * 154.99621 * 8 7 2 38 38 H 0.96991 * 120.00261 * 180.02562 * 12 11 9 39 39 H 1.08002 * 119.98030 * 0.02562 * 21 20 17 40 40 H 1.08000 * 120.00147 * 180.02562 * 22 21 20 41 41 H 1.08005 * 120.02197 * 180.25797 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.0104 -1.4540 2.1118 6 6 1.6358 -0.1493 2.6097 7 7 2.0184 -0.6907 -1.1961 8 6 1.6644 -2.0933 -1.4279 9 6 2.6338 -2.9838 -0.6941 10 1 3.4333 -2.5485 -0.1130 11 6 2.4994 -4.3543 -0.7640 12 7 1.5256 -4.8843 -1.4712 13 14 3.7006 -5.4581 0.1461 14 1 4.6959 -4.6213 0.8634 15 1 2.9604 -6.2943 1.1249 16 1 4.4001 -6.3360 -0.8261 17 16 2.9704 0.1139 -2.2862 18 8 2.6904 1.4971 -2.1193 19 8 2.8228 -0.5648 -3.5258 20 6 4.6445 -0.1184 -1.7880 21 6 5.5138 -0.8270 -2.5962 22 6 6.8268 -1.0104 -2.2064 23 6 7.2726 -0.4837 -1.0058 24 9 8.5564 -0.6622 -0.6245 25 6 6.4035 0.2301 -0.1988 26 6 5.0880 0.4079 -0.5878 27 17 3.9954 1.2972 0.4266 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.0324 -1.1640 1.1643 32 1 -0.0303 -1.4219 1.7894 33 1 1.3253 -2.3792 2.5944 34 1 2.3620 -0.2163 3.4197 35 1 1.0069 0.7410 2.6146 36 1 0.6540 -2.2781 -1.0632 37 1 1.7104 -2.3080 -2.4954 38 1 1.4308 -5.8484 -1.5200 39 1 5.1666 -1.2376 -3.5328 40 1 7.5055 -1.5637 -2.8385 41 1 6.7513 0.6449 0.7358 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069619854.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:34 Heat of formation + Delta-G solvation = -72.601942 kcal Electronic energy + Delta-G solvation = -30040.731427 eV Core-core repulsion = 25796.099547 eV Total energy + Delta-G solvation = -4244.631879 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 361.070 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -50.26183 -40.27142 -39.64216 -38.39848 -37.69980 -36.93707 -36.23658 -34.42144 -32.33890 -31.92930 -30.96664 -28.59052 -25.89645 -24.58386 -24.38956 -23.94080 -23.01641 -20.79267 -19.85368 -19.40412 -18.75401 -18.60066 -18.19958 -17.96819 -17.14418 -16.93182 -16.47904 -16.26055 -16.14876 -15.54143 -15.38692 -15.12532 -14.82445 -14.62137 -14.50297 -14.44242 -14.13807 -13.66973 -13.24553 -13.20147 -13.08834 -13.03814 -12.85753 -12.67868 -12.61520 -12.55763 -12.49038 -12.32731 -12.23578 -11.97667 -11.84929 -11.57091 -11.27862 -11.00305 -10.55605 -10.48092 -10.40950 -10.11696 -9.72108 -8.09636 -6.17469 -0.75724 -0.49356 -0.18253 0.63841 1.38668 1.42927 1.50516 1.82474 2.10696 2.44932 2.67645 2.89676 3.12754 3.18858 3.26379 3.52650 3.72692 3.92398 3.95826 3.99926 4.17584 4.31717 4.35696 4.37337 4.46397 4.57789 4.64110 4.70893 4.76838 4.77866 4.92625 5.03813 5.12090 5.27544 5.35247 5.40842 5.43338 5.45126 5.61322 5.65760 5.84884 6.00573 6.20826 6.91575 7.49595 8.99056 Molecular weight = 361.07amu Principal moments of inertia in cm(-1) A = 0.008144 B = 0.006638 C = 0.005287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3437.429271 B = 4217.345804 C = 5294.610112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.170 3.830 3 H 0.103 0.897 4 C -0.150 4.150 5 C -0.177 4.177 6 C -0.164 4.164 7 N -0.970 5.970 8 C 0.262 3.738 9 C -0.514 4.514 10 H 0.066 0.934 11 C 0.020 3.980 12 N -0.925 5.925 13 Si 0.938 3.062 14 H -0.266 1.266 15 H -0.284 1.284 16 H -0.285 1.285 17 S 2.689 3.311 18 O -0.969 6.969 19 O -0.983 6.983 20 C -0.685 4.685 21 C 0.013 3.987 22 C -0.164 4.164 23 C 0.161 3.839 24 F -0.121 7.121 25 C -0.166 4.166 26 C 0.069 3.931 27 Cl -0.019 7.019 28 H 0.058 0.942 29 H 0.089 0.911 30 H 0.055 0.945 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.035 0.965 37 H 0.022 0.978 38 H 0.262 0.738 39 H 0.163 0.837 40 H 0.180 0.820 41 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.360 11.049 5.365 14.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.065 3.935 3 H 0.120 0.880 4 C -0.170 4.170 5 C -0.214 4.214 6 C -0.202 4.202 7 N -0.809 5.809 8 C 0.139 3.861 9 C -0.554 4.554 10 H 0.084 0.916 11 C -0.179 4.179 12 N -0.566 5.566 13 Si 0.765 3.235 14 H -0.190 1.190 15 H -0.210 1.210 16 H -0.211 1.211 17 S 2.780 3.220 18 O -0.959 6.959 19 O -0.974 6.974 20 C -0.772 4.772 21 C -0.007 4.007 22 C -0.183 4.183 23 C 0.141 3.859 24 F -0.099 7.099 25 C -0.186 4.186 26 C 0.041 3.959 27 Cl 0.010 6.990 28 H 0.077 0.923 29 H 0.107 0.893 30 H 0.074 0.926 31 H 0.112 0.888 32 H 0.117 0.883 33 H 0.094 0.906 34 H 0.117 0.883 35 H 0.125 0.875 36 H 0.053 0.947 37 H 0.040 0.960 38 H 0.071 0.929 39 H 0.180 0.820 40 H 0.197 0.803 41 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 6.960 11.436 4.690 14.186 hybrid contribution 1.138 -1.495 0.775 2.032 sum 8.098 9.941 5.465 13.938 Atomic orbital electron populations 1.22254 0.94383 1.02604 1.02696 1.20741 0.95023 0.95057 0.82714 0.87998 1.22495 0.99965 1.03748 0.90806 1.22941 0.98929 0.95580 1.03902 1.23071 1.03610 0.97328 0.96184 1.57283 1.62935 1.23468 1.37183 1.18802 0.96741 0.74588 0.96010 1.21738 1.13200 0.90909 1.29532 0.91585 1.25522 0.96786 0.99387 0.96225 1.70032 1.32819 1.11825 1.41931 0.85812 0.79691 0.79388 0.78658 1.19002 1.20994 1.21141 1.01806 0.73745 0.72982 0.73472 1.93543 1.84221 1.31498 1.86633 1.93513 1.86043 1.75668 1.42186 1.30980 1.27033 1.14226 1.05005 1.20997 0.91959 0.89476 0.98220 1.21626 0.97152 1.02765 0.96745 1.17722 0.78882 0.95687 0.93606 1.91568 1.34356 1.93034 1.90990 1.21239 0.91310 1.03013 1.03025 1.20249 0.91993 0.93318 0.90362 1.98438 1.60103 1.73304 1.67109 0.92267 0.89280 0.92601 0.88791 0.88307 0.90587 0.88255 0.87531 0.94692 0.96030 0.92909 0.81954 0.80260 0.80523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.84 7.76 71.98 0.56 -4.28 16 2 C 0.17 5.67 2.03 44.99 0.09 5.77 16 3 H 0.10 3.21 4.41 -2.39 -0.01 3.20 16 4 C -0.15 -4.80 2.89 -10.79 -0.03 -4.83 16 5 C -0.18 -5.37 9.57 30.59 0.29 -5.08 16 6 C -0.16 -4.04 9.90 30.60 0.30 -3.74 16 7 N -0.97 -38.40 2.73 -497.40 -1.36 -39.75 16 8 C 0.26 12.42 5.13 85.63 0.44 12.86 16 9 C -0.51 -25.40 8.22 25.60 0.21 -25.19 16 10 H 0.07 3.17 6.27 -2.91 -0.02 3.15 16 11 C 0.02 1.04 5.46 84.66 0.46 1.50 16 12 N -0.93 -51.76 13.29 21.45 0.28 -51.47 16 13 Si 0.94 41.59 29.54 68.60 2.03 43.62 16 14 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 15 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 16 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 17 S 2.69 104.54 5.19 -56.49 -0.29 104.24 16 18 O -0.97 -37.39 15.23 -128.00 -1.95 -39.34 16 19 O -0.98 -43.71 15.52 -128.00 -1.99 -45.70 16 20 C -0.69 -23.17 5.91 22.30 0.13 -23.03 16 21 C 0.01 0.39 9.54 22.26 0.21 0.60 16 22 C -0.16 -4.02 10.03 22.32 0.22 -3.79 16 23 C 0.16 3.93 7.30 22.37 0.16 4.09 16 24 F -0.12 -2.74 17.27 44.97 0.78 -1.96 16 25 C -0.17 -4.14 9.81 22.34 0.22 -3.92 16 26 C 0.07 2.07 6.30 22.32 0.14 2.21 16 27 Cl -0.02 -0.54 20.84 -2.72 -0.06 -0.59 16 28 H 0.06 1.97 5.53 -2.39 -0.01 1.96 16 29 H 0.09 2.11 7.07 -2.39 -0.02 2.09 16 30 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.09 3.38 6.21 -2.39 -0.01 3.36 16 32 H 0.10 2.93 5.85 -2.38 -0.01 2.91 16 33 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.11 2.21 7.61 -2.39 -0.02 2.19 16 36 H 0.04 1.74 6.45 -2.39 -0.02 1.73 16 37 H 0.02 1.16 6.91 -2.39 -0.02 1.14 16 38 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 39 H 0.16 4.77 7.33 -2.91 -0.02 4.75 16 40 H 0.18 3.19 8.06 -2.91 -0.02 3.16 16 41 H 0.18 3.35 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -61.64 353.26 1.95 -59.69 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 1.09 Total: 18.11 kcal Atomic # 6 Polarization: -50.26 SS G_CDS: 3.42 Total: -46.84 kcal Atomic # 7 Polarization: -90.16 SS G_CDS: -1.07 Total: -91.23 kcal Atomic # 8 Polarization: -81.11 SS G_CDS: -3.94 Total: -85.04 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.78 Total: -1.96 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Atomic # 16 Polarization: 104.54 SS G_CDS: -0.29 Total: 104.24 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -0.06 Total: -0.59 kcal Total: -61.64 1.95 -59.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069619854.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.911 kcal (2) G-P(sol) polarization free energy of solvation -61.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds