Wall clock time and date at job start Tue Mar 31 2020 06:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46430 * 2 1 4 4 C 1.53035 * 109.45233 * 240.02471 * 2 1 3 5 5 C 1.53120 * 109.27710 * 180.80829 * 4 2 1 6 6 C 1.53124 * 109.15990 * 57.65651 * 5 4 2 7 7 C 1.53033 * 109.27741 * 302.34345 * 6 5 4 8 8 N 1.46846 * 109.46133 * 119.97812 * 2 1 3 9 9 C 1.46899 * 111.00110 * 305.83927 * 8 2 1 10 10 C 1.53006 * 109.47038 * 161.96891 * 9 8 2 11 11 O 1.42902 * 109.46736 * 68.46510 * 10 9 8 12 12 C 1.35651 * 116.99714 * 179.97438 * 11 10 9 13 13 C 1.38712 * 120.15066 * 359.97438 * 12 11 10 14 14 C 1.38052 * 120.08028 * 179.72472 * 13 12 11 15 15 C 1.38549 * 120.39563 * 0.27764 * 14 13 12 16 16 C 1.37784 * 120.29763 * 359.97438 * 15 14 13 17 17 C 1.39707 * 119.91082 * 359.97438 * 16 15 14 18 18 C 1.47536 * 120.19515 * 179.97438 * 17 16 15 19 19 O 1.21585 * 119.99646 * 137.87514 * 18 17 16 20 20 N 1.34779 * 119.99937 * 317.88437 * 18 17 16 21 21 C 1.46497 * 120.00245 * 4.71324 * 20 18 17 22 22 C 1.46507 * 119.99646 * 184.71865 * 20 18 17 23 23 C 1.50696 * 109.46984 * 89.99819 * 22 20 18 24 24 H 1.07999 * 120.00151 * 359.97438 * 23 22 20 25 25 C 1.37880 * 119.99849 * 180.02562 * 23 22 20 26 26 N 1.31507 * 119.99939 * 180.02562 * 25 23 22 27 27 Si 1.86805 * 119.99921 * 359.97438 * 25 23 22 28 28 H 1.48496 * 109.47124 * 89.99887 * 27 25 23 29 29 H 1.48496 * 109.46951 * 210.00358 * 27 25 23 30 30 H 1.48498 * 109.47081 * 330.00226 * 27 25 23 31 31 H 1.09008 * 109.47163 * 308.47074 * 1 2 3 32 32 H 1.08994 * 109.47289 * 68.46886 * 1 2 3 33 33 H 1.08995 * 109.47166 * 188.47602 * 1 2 3 34 34 H 1.08995 * 109.50390 * 300.75389 * 4 2 1 35 35 H 1.09004 * 109.50313 * 60.83017 * 4 2 1 36 36 H 1.09001 * 109.52129 * 177.56048 * 5 4 2 37 37 H 1.09001 * 109.52654 * 297.75161 * 5 4 2 38 38 H 1.08998 * 109.50404 * 62.28377 * 6 5 4 39 39 H 1.08995 * 109.50438 * 182.36318 * 6 5 4 40 40 H 1.08997 * 109.46663 * 299.16461 * 7 6 5 41 41 H 1.09002 * 109.46472 * 179.19519 * 7 6 5 42 42 H 1.09002 * 109.47095 * 41.97483 * 9 8 2 43 43 H 1.08994 * 109.47633 * 281.97362 * 9 8 2 44 44 H 1.09000 * 109.47365 * 308.45971 * 10 9 8 45 45 H 1.09003 * 109.46963 * 188.46025 * 10 9 8 46 46 H 1.07995 * 119.95737 * 359.97438 * 13 12 11 47 47 H 1.08008 * 119.80379 * 180.25217 * 14 13 12 48 48 H 1.07992 * 119.84950 * 179.97438 * 15 14 13 49 49 H 1.07995 * 120.04939 * 179.97438 * 16 15 14 50 50 H 1.08997 * 109.46870 * 87.63024 * 21 20 18 51 51 H 1.08996 * 109.47292 * 207.63306 * 21 20 18 52 52 H 1.09004 * 109.47062 * 327.63517 * 21 20 18 53 53 H 1.08998 * 109.46764 * 209.99644 * 22 20 18 54 54 H 1.08994 * 109.46886 * 329.99627 * 22 20 18 55 55 H 0.97007 * 119.99859 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0397 -0.7210 -1.2500 5 6 3.5707 -0.7363 -1.2358 6 6 4.0546 -1.4192 0.0465 7 6 3.4865 -0.6780 1.2589 8 7 2.0193 -0.6918 1.1993 9 6 1.4376 -0.1105 2.4166 10 6 1.5924 -1.0960 3.5767 11 8 2.9743 -1.2124 3.9215 12 6 3.2862 -2.0531 4.9394 13 6 2.2852 -2.7535 5.5962 14 6 2.6049 -3.6130 6.6281 15 6 3.9236 -3.7787 7.0194 16 6 4.9301 -3.0870 6.3815 17 6 4.6209 -2.2147 5.3349 18 6 5.6937 -1.4705 4.6478 19 8 5.6764 -1.3583 3.4373 20 7 6.6927 -0.9152 5.3620 21 6 6.7705 -1.1371 6.8080 22 6 7.7008 -0.0896 4.6922 23 6 7.2475 1.3475 4.6828 24 1 6.3028 1.6188 5.1305 25 6 8.0383 2.3160 4.1016 26 7 7.6430 3.5702 4.0938 27 14 9.6720 1.8467 3.3267 28 1 9.4626 1.5111 1.8954 29 1 10.6168 2.9872 3.4347 30 1 10.2351 0.6687 4.0340 31 1 -0.3634 0.6394 0.8046 32 1 -0.3633 0.3771 -0.9559 33 1 -0.3633 -1.0164 0.1515 34 1 1.6655 -1.7446 -1.2576 35 1 1.6886 -0.1986 -2.1400 36 1 3.9375 -1.2866 -2.1022 37 1 3.9456 0.2867 -1.2674 38 1 3.7121 -2.4539 0.0593 39 1 5.1437 -1.3959 0.0825 40 1 3.8405 0.3529 1.2530 41 1 3.8175 -1.1702 2.1734 42 1 0.3795 0.0935 2.2520 43 1 1.9535 0.8187 2.6579 44 1 1.2088 -2.0717 3.2783 45 1 1.0321 -0.7335 4.4386 46 1 1.2549 -2.6294 5.2972 47 1 1.8223 -4.1593 7.1338 48 1 4.1637 -4.4530 7.8280 49 1 5.9566 -3.2189 6.6900 50 1 7.3321 -2.0501 7.0057 51 1 7.2732 -0.2922 7.2787 52 1 5.7642 -1.2341 7.2154 53 1 8.6479 -0.1684 5.2260 54 1 7.8315 -0.4362 3.6672 55 1 8.1996 4.2516 3.6853 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069622023.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:22 Heat of formation + Delta-G solvation = -56.063599 kcal Electronic energy + Delta-G solvation = -34487.994775 eV Core-core repulsion = 30296.605187 eV Total energy + Delta-G solvation = -4191.389588 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 360.220 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.63943 -40.49016 -39.77646 -38.23380 -36.59000 -34.97083 -34.75339 -33.42159 -32.53286 -31.14612 -30.31090 -29.78225 -27.87851 -27.53671 -25.44331 -25.34879 -23.87226 -23.11682 -22.72607 -21.86971 -20.69977 -20.57486 -19.17303 -18.95128 -18.05567 -17.47654 -17.41901 -16.88706 -16.53770 -16.22881 -16.20040 -15.84610 -15.63460 -15.38278 -15.24485 -15.11403 -15.00114 -14.71411 -14.30940 -14.24424 -13.99619 -13.79392 -13.66976 -13.39166 -13.33219 -13.15125 -12.93741 -12.86734 -12.80003 -12.69121 -12.62303 -12.47305 -12.41239 -12.09911 -12.02457 -11.95193 -11.84086 -11.78737 -11.65371 -11.20632 -10.93140 -10.86931 -10.62100 -9.88666 -9.41404 -9.40060 -9.09871 -8.37606 -6.42370 0.08505 0.49779 1.27929 1.32735 1.41256 1.91777 2.24666 2.27269 2.37880 2.82518 2.89779 2.96864 3.67147 3.77682 3.81714 3.88892 3.92446 3.95406 4.09274 4.15188 4.23169 4.24921 4.28575 4.35554 4.42796 4.44622 4.46795 4.49088 4.55857 4.59660 4.64162 4.68736 4.73649 4.76382 4.88513 4.90934 4.91919 4.94810 4.99522 5.00022 5.04129 5.08943 5.17278 5.27017 5.27756 5.40592 5.41993 5.43695 5.52030 5.53906 5.64102 5.87570 6.04060 6.18357 6.22157 6.50234 6.58142 6.70961 7.18291 7.45231 8.79787 Molecular weight = 360.22amu Principal moments of inertia in cm(-1) A = 0.006758 B = 0.004478 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4142.143401 B = 6251.610471 C = 9274.474264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.067 3.933 3 H 0.015 0.985 4 C -0.100 4.100 5 C -0.122 4.122 6 C -0.107 4.107 7 C 0.050 3.950 8 N -0.522 5.522 9 C 0.047 3.953 10 C 0.058 3.942 11 O -0.322 6.322 12 C 0.152 3.848 13 C -0.218 4.218 14 C -0.052 4.052 15 C -0.160 4.160 16 C -0.057 4.057 17 C -0.193 4.193 18 C 0.546 3.454 19 O -0.571 6.571 20 N -0.606 5.606 21 C 0.076 3.924 22 C 0.228 3.772 23 C -0.533 4.533 24 H 0.021 0.979 25 C 0.012 3.988 26 N -0.946 5.946 27 Si 0.948 3.052 28 H -0.279 1.279 29 H -0.272 1.272 30 H -0.236 1.236 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.040 0.960 38 H 0.071 0.929 39 H 0.041 0.959 40 H -0.019 1.019 41 H 0.103 0.897 42 H 0.133 0.867 43 H 0.011 0.989 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.154 0.846 47 H 0.167 0.833 48 H 0.165 0.835 49 H 0.150 0.850 50 H 0.087 0.913 51 H 0.065 0.935 52 H 0.080 0.920 53 H 0.052 0.948 54 H 0.018 0.982 55 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.910 -17.134 1.388 23.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.041 4.041 3 H 0.033 0.967 4 C -0.138 4.138 5 C -0.159 4.159 6 C -0.145 4.145 7 C -0.077 4.077 8 N -0.247 5.247 9 C -0.081 4.081 10 C -0.016 4.016 11 O -0.235 6.235 12 C 0.105 3.895 13 C -0.236 4.236 14 C -0.070 4.070 15 C -0.178 4.178 16 C -0.075 4.075 17 C -0.197 4.197 18 C 0.335 3.665 19 O -0.451 6.451 20 N -0.337 5.337 21 C -0.066 4.066 22 C 0.106 3.894 23 C -0.572 4.572 24 H 0.040 0.960 25 C -0.186 4.186 26 N -0.586 5.586 27 Si 0.770 3.230 28 H -0.204 1.204 29 H -0.197 1.197 30 H -0.158 1.158 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.059 0.941 38 H 0.090 0.910 39 H 0.060 0.940 40 H -0.001 1.001 41 H 0.120 0.880 42 H 0.151 0.849 43 H 0.030 0.970 44 H 0.106 0.894 45 H 0.105 0.895 46 H 0.172 0.828 47 H 0.184 0.816 48 H 0.183 0.817 49 H 0.168 0.832 50 H 0.105 0.895 51 H 0.084 0.916 52 H 0.098 0.902 53 H 0.070 0.930 54 H 0.036 0.964 55 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.875 -17.237 0.567 23.440 hybrid contribution 1.270 1.939 -0.409 2.353 sum -14.604 -15.299 0.158 21.151 Atomic orbital electron populations 1.21884 0.91738 1.03165 1.02796 1.21835 0.97200 0.94425 0.90667 0.96736 1.21583 0.93996 1.01791 0.96430 1.21623 0.97253 0.99718 0.97346 1.21443 0.98718 0.99958 0.94382 1.22321 0.87286 0.96695 1.01426 1.62186 1.06512 1.53975 1.02030 1.22424 1.01966 0.94505 0.89225 1.23157 0.79792 1.01275 0.97407 1.86313 1.29162 1.60238 1.47797 1.19367 0.92944 0.89846 0.87386 1.21477 0.98897 1.02157 1.01075 1.21564 0.97645 0.94254 0.93493 1.21383 0.92119 1.01936 1.02379 1.21599 1.01893 0.92658 0.91356 1.19407 0.91055 1.06045 1.03170 1.18716 0.81887 0.79032 0.86824 1.90665 1.76725 1.62084 1.15652 1.47812 1.27239 1.48974 1.09653 1.22181 1.03159 1.02371 0.78856 1.19301 0.88200 0.88494 0.93454 1.21520 1.05269 0.92555 1.37811 0.96050 1.25846 1.02530 0.94455 0.95746 1.70058 1.40170 1.02042 1.46369 0.85719 0.78708 0.79408 0.79146 1.20450 1.19666 1.15847 0.92127 0.90432 0.90750 0.90282 0.89630 0.90173 0.94127 0.91004 0.94023 1.00103 0.87963 0.84924 0.97022 0.89425 0.89513 0.82817 0.81572 0.81744 0.83241 0.89511 0.91590 0.90197 0.93005 0.96398 0.92304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 8.55 71.98 0.62 -1.79 16 2 C 0.07 1.71 2.44 44.94 0.11 1.82 16 3 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 4 C -0.10 -2.30 5.36 30.65 0.16 -2.14 16 5 C -0.12 -3.44 6.00 30.68 0.18 -3.26 16 6 C -0.11 -3.78 6.09 30.65 0.19 -3.59 16 7 C 0.05 2.03 5.18 86.32 0.45 2.47 16 8 N -0.52 -15.94 4.43 -871.10 -3.86 -19.80 16 9 C 0.05 1.30 5.34 86.31 0.46 1.76 16 10 C 0.06 1.53 5.02 71.98 0.36 1.90 16 11 O -0.32 -12.04 6.19 -75.51 -0.47 -12.50 16 12 C 0.15 5.03 6.67 22.85 0.15 5.19 16 13 C -0.22 -4.90 9.03 22.34 0.20 -4.70 16 14 C -0.05 -0.87 10.03 22.30 0.22 -0.64 16 15 C -0.16 -2.82 10.02 22.24 0.22 -2.60 16 16 C -0.06 -1.42 7.56 22.52 0.17 -1.25 16 17 C -0.19 -6.87 5.15 -20.01 -0.10 -6.97 16 18 C 0.55 25.21 7.11 86.70 0.62 25.83 16 19 O -0.57 -31.08 14.04 10.16 0.14 -30.94 16 20 N -0.61 -27.10 2.86 -854.94 -2.44 -29.54 16 21 C 0.08 2.44 8.93 127.77 1.14 3.59 16 22 C 0.23 11.84 4.25 85.63 0.36 12.21 16 23 C -0.53 -33.18 9.94 25.60 0.25 -32.93 16 24 H 0.02 1.50 8.06 -2.91 -0.02 1.48 16 25 C 0.01 0.74 5.47 84.66 0.46 1.20 16 26 N -0.95 -62.16 13.96 21.45 0.30 -61.86 16 27 Si 0.95 46.42 27.47 68.60 1.88 48.30 16 28 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 29 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 30 H -0.24 -10.32 6.54 99.48 0.65 -9.67 16 31 H 0.06 0.97 6.46 -2.38 -0.02 0.96 16 32 H 0.08 1.09 8.13 -2.39 -0.02 1.07 16 33 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 34 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 36 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 40 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 41 H 0.10 4.69 3.30 -2.39 -0.01 4.68 16 42 H 0.13 2.63 5.50 -2.39 -0.01 2.61 16 43 H 0.01 0.40 8.03 -2.39 -0.02 0.38 16 44 H 0.09 1.96 7.66 -2.39 -0.02 1.94 16 45 H 0.09 1.80 7.66 -2.39 -0.02 1.78 16 46 H 0.15 2.59 6.30 -2.91 -0.02 2.57 16 47 H 0.17 1.43 8.06 -2.91 -0.02 1.40 16 48 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 49 H 0.15 3.19 5.67 -2.91 -0.02 3.17 16 50 H 0.09 2.05 7.06 -2.39 -0.02 2.04 16 51 H 0.07 2.20 8.05 -2.39 -0.02 2.18 16 52 H 0.08 2.32 5.78 -2.38 -0.01 2.30 16 53 H 0.05 2.44 7.13 -2.39 -0.02 2.43 16 54 H 0.02 1.00 6.79 -2.39 -0.02 0.98 16 55 H 0.27 16.32 8.31 -92.70 -0.77 15.55 16 Total: -1.00 -87.46 417.14 2.61 -84.85 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: 0.82 Total: 25.41 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: 6.24 Total: -3.91 kcal Atomic # 7 Polarization: -105.20 SS G_CDS: -6.00 Total: -111.20 kcal Atomic # 8 Polarization: -43.12 SS G_CDS: -0.32 Total: -43.44 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 1.88 Total: 48.30 kcal Total: -87.46 2.61 -84.85 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069622023.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.787 kcal (2) G-P(sol) polarization free energy of solvation -87.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds