Wall clock time and date at job start Tue Mar 31 2020 06:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38254 * 119.99739 * 2 1 4 4 C 1.38215 * 120.00008 * 180.02562 * 3 2 1 5 5 C 1.38252 * 119.99976 * 0.02562 * 4 3 2 6 6 C 1.50706 * 120.00006 * 179.97438 * 5 4 3 7 7 C 1.38209 * 119.99922 * 359.97438 * 5 4 3 8 8 S 1.76204 * 119.99853 * 179.97438 * 7 5 4 9 9 O 1.42104 * 106.40063 * 181.77257 * 8 7 5 10 10 O 1.42098 * 106.40344 * 48.85040 * 8 7 5 11 11 N 1.65605 * 107.21487 * 295.30944 * 8 7 5 12 12 C 1.46500 * 120.00201 * 278.45505 * 11 8 7 13 13 C 1.50697 * 109.47100 * 265.00360 * 12 11 8 14 14 H 1.07999 * 120.00614 * 359.97438 * 13 12 11 15 15 C 1.37885 * 119.99676 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99622 * 179.97438 * 15 13 12 17 17 Si 1.86794 * 120.00210 * 0.02562 * 15 13 12 18 18 H 1.48507 * 109.47185 * 89.99544 * 17 15 13 19 19 H 1.48498 * 109.47161 * 209.99739 * 17 15 13 20 20 H 1.48500 * 109.47242 * 329.99835 * 17 15 13 21 21 C 1.46494 * 119.99718 * 98.45726 * 11 8 7 22 22 C 1.50703 * 109.47257 * 97.46530 * 21 11 8 23 23 C 1.38225 * 119.61873 * 94.97220 * 22 21 11 24 24 C 1.38634 * 119.16419 * 179.79079 * 23 22 21 25 25 C 1.38675 * 118.41655 * 0.47833 * 24 23 22 26 26 C 1.38183 * 119.16027 * 359.50257 * 25 24 23 27 27 N 1.31852 * 119.61804 * 275.00203 * 22 21 11 28 28 C 1.38206 * 120.00317 * 180.28219 * 2 1 3 29 29 H 1.08994 * 109.47437 * 90.00122 * 1 2 3 30 30 H 1.09005 * 109.46497 * 209.99693 * 1 2 3 31 31 H 1.08995 * 109.46966 * 329.99500 * 1 2 3 32 32 H 1.08009 * 120.00308 * 0.02562 * 3 2 1 33 33 H 1.08006 * 119.99905 * 179.97438 * 4 3 2 34 34 H 1.08994 * 109.46470 * 264.03726 * 6 5 4 35 35 H 1.08996 * 109.47021 * 24.03503 * 6 5 4 36 36 H 1.09000 * 109.46936 * 144.03451 * 6 5 4 37 37 H 1.09008 * 109.46633 * 25.00119 * 12 11 8 38 38 H 1.08998 * 109.47032 * 144.99740 * 12 11 8 39 39 H 0.97000 * 119.99911 * 179.97438 * 16 15 13 40 40 H 1.08994 * 109.47238 * 337.46419 * 21 11 8 41 41 H 1.09002 * 109.47248 * 217.46411 * 21 11 8 42 42 H 1.08000 * 120.42078 * 0.02562 * 23 22 21 43 43 H 1.07999 * 120.79242 * 180.23655 * 24 23 22 44 44 H 1.07999 * 120.41923 * 179.77974 * 25 24 23 45 45 H 1.08006 * 119.61411 * 180.24918 * 26 25 24 46 46 H 1.08002 * 120.00357 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0016 6 6 5.7788 0.0002 -0.0028 7 6 3.5807 -1.1968 -0.0016 8 16 4.4618 -2.7227 -0.0037 9 8 3.4824 -3.7515 -0.0454 10 8 5.4405 -2.6224 1.0217 11 7 5.2909 -2.8081 -1.4347 12 6 4.6058 -3.2466 -2.6531 13 6 4.8286 -4.7238 -2.8507 14 1 5.4215 -5.2804 -2.1400 15 6 4.2754 -5.3650 -3.9389 16 7 4.4702 -6.6541 -4.1115 17 14 3.2504 -4.4023 -5.1685 18 1 4.1313 -3.8740 -6.2411 19 1 2.2251 -5.2956 -5.7651 20 1 2.5802 -3.2720 -4.4769 21 6 6.7093 -2.4450 -1.4821 22 6 7.5503 -3.6926 -1.3962 23 6 8.0019 -4.2934 -2.5563 24 6 8.7785 -5.4382 -2.4662 25 6 9.0648 -5.9440 -1.2071 26 6 8.5787 -5.2888 -0.0918 27 7 7.8464 -4.1989 -0.2153 28 6 2.1981 -1.1968 -0.0059 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3632 -0.8901 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.6582 2.1327 0.0004 33 1 4.1204 2.1328 -0.0010 34 1 6.1412 -0.1061 -1.0252 35 1 6.1424 0.9386 0.4159 36 1 6.1426 -0.8318 0.6001 37 1 3.5377 -3.0494 -2.5604 38 1 5.0029 -2.7015 -3.5094 39 1 4.0807 -7.1053 -4.8768 40 1 6.9449 -1.7897 -0.6437 41 1 6.9210 -1.9280 -2.4181 42 1 7.7560 -3.8740 -3.5207 43 1 9.1484 -5.9268 -3.3554 44 1 9.6639 -6.8361 -1.0994 45 1 8.8006 -5.6740 0.8925 46 1 1.6582 -2.1322 -0.0101 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069652011.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:25 Heat of formation + Delta-G solvation = 0.952203 kcal Electronic energy + Delta-G solvation = -31280.246914 eV Core-core repulsion = 27262.416399 eV Total energy + Delta-G solvation = -4017.830515 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 360.129 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -39.60762 -39.47687 -36.76497 -35.99021 -35.14405 -33.89720 -32.59098 -31.80400 -31.19663 -30.97539 -29.42728 -28.08159 -25.63420 -24.85808 -23.27668 -22.92383 -22.06410 -21.43392 -21.21328 -18.23720 -17.22269 -17.12333 -16.45606 -16.35486 -15.91708 -15.64958 -15.62770 -15.08104 -14.90040 -14.26907 -14.21836 -14.11545 -13.64373 -13.44012 -13.18243 -13.03078 -12.90864 -12.78592 -12.62677 -12.38815 -12.33214 -12.24360 -12.07564 -11.71368 -11.62100 -11.50448 -11.26124 -11.20923 -11.07328 -11.03946 -10.63584 -10.47941 -10.27855 -10.18809 -9.56513 -9.27303 -9.21847 -8.89006 -8.61548 -8.55570 -8.41717 -8.13472 -6.06926 -4.04821 0.77588 1.06240 1.29980 1.71794 1.93588 3.22468 3.31206 3.32417 3.38217 3.71101 4.30977 4.37236 4.47171 4.59026 4.72484 4.81286 4.82392 5.03399 5.10057 5.17746 5.20522 5.26335 5.36177 5.44115 5.47900 5.51355 5.53046 5.59921 5.64502 5.71514 5.81360 5.85379 5.90433 5.94036 6.10550 6.14561 6.19271 6.26647 6.33134 6.36750 6.41662 6.64848 6.70125 6.78928 6.89728 6.99597 7.27613 7.29958 7.56193 8.49839 8.61076 9.01701 9.51809 11.06186 Molecular weight = 360.13amu Principal moments of inertia in cm(-1) A = 0.009641 B = 0.004979 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2903.466381 B = 5622.550803 C = 7475.123377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.118 4.118 3 C -0.070 4.070 4 C -0.143 4.143 5 C 0.015 3.985 6 C -0.180 4.180 7 C -0.673 4.673 8 S 2.686 3.314 9 O -0.942 6.942 10 O -0.949 6.949 11 N -0.970 5.970 12 C 0.224 3.776 13 C -0.519 4.519 14 H 0.081 0.919 15 C 0.075 3.925 16 N -0.892 5.892 17 Si 0.864 3.136 18 H -0.276 1.276 19 H -0.284 1.284 20 H -0.265 1.265 21 C 0.170 3.830 22 C 0.115 3.885 23 C -0.117 4.117 24 C -0.078 4.078 25 C -0.175 4.175 26 C 0.086 3.914 27 N -0.466 5.466 28 C -0.019 4.019 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.113 0.887 37 H 0.032 0.968 38 H 0.031 0.969 39 H 0.263 0.737 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.133 0.867 43 H 0.127 0.873 44 H 0.125 0.875 45 H 0.147 0.853 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.502 14.592 4.958 15.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.119 4.119 3 C -0.088 4.088 4 C -0.162 4.162 5 C 0.014 3.986 6 C -0.236 4.236 7 C -0.757 4.757 8 S 2.774 3.226 9 O -0.932 6.932 10 O -0.939 6.939 11 N -0.808 5.808 12 C 0.101 3.899 13 C -0.558 4.558 14 H 0.099 0.901 15 C -0.127 4.127 16 N -0.531 5.531 17 Si 0.691 3.309 18 H -0.201 1.201 19 H -0.210 1.210 20 H -0.190 1.190 21 C 0.043 3.957 22 C -0.024 4.024 23 C -0.137 4.137 24 C -0.104 4.104 25 C -0.195 4.195 26 C -0.072 4.072 27 N -0.175 5.175 28 C -0.038 4.038 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.143 0.857 33 H 0.146 0.854 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.131 0.869 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.073 0.927 40 H 0.118 0.882 41 H 0.107 0.893 42 H 0.151 0.849 43 H 0.145 0.855 44 H 0.143 0.857 45 H 0.165 0.835 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.098 14.281 6.228 15.721 hybrid contribution -0.721 0.387 -1.998 2.159 sum 1.376 14.668 4.230 15.327 Atomic orbital electron populations 1.20793 0.90698 1.02919 1.02617 1.20006 0.96433 0.93136 1.02285 1.21241 0.94295 0.97516 0.95777 1.21116 0.94269 0.97561 1.03229 1.19501 0.95799 0.91793 0.91514 1.21925 0.90805 1.06468 1.04418 1.31328 1.06386 1.21037 1.16958 1.02384 0.73573 0.73537 0.73116 1.93590 1.61367 1.52430 1.85789 1.93522 1.59098 1.86564 1.54708 1.57247 1.16353 1.80481 1.26724 1.19543 0.91769 0.96832 0.81767 1.21322 1.33094 0.91367 1.10042 0.90101 1.24820 0.95695 0.94683 0.97514 1.69893 1.44931 1.08666 1.29573 0.87044 0.81091 0.80627 0.82127 1.20132 1.20978 1.18964 1.20317 0.79212 0.92552 1.03574 1.21470 0.94971 0.97462 0.88540 1.21850 0.96087 0.96146 0.99664 1.21459 0.96291 0.95082 0.97539 1.22018 1.02526 1.01058 0.93924 1.22582 0.94269 0.91828 0.98486 1.67510 1.11274 1.11638 1.27118 1.20914 0.92113 0.98945 0.91806 0.90976 0.91147 0.91555 0.85667 0.85412 0.89340 0.90122 0.86870 0.94977 0.95099 0.92687 0.88156 0.89275 0.84908 0.85489 0.85681 0.83537 0.83995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 10.01 36.01 0.36 -0.79 16 2 C -0.12 -1.56 5.88 -104.63 -0.62 -2.18 16 3 C -0.07 -0.82 9.70 -39.58 -0.38 -1.20 16 4 C -0.14 -1.74 9.68 -39.58 -0.38 -2.12 16 5 C 0.02 0.22 5.87 -104.62 -0.61 -0.40 16 6 C -0.18 -2.24 7.89 36.01 0.28 -1.96 16 7 C -0.67 -11.53 5.91 -39.58 -0.23 -11.76 16 8 S 2.69 54.98 4.99 -107.50 -0.54 54.45 16 9 O -0.94 -22.94 16.26 -57.17 -0.93 -23.87 16 10 O -0.95 -19.73 14.37 -57.17 -0.82 -20.55 16 11 N -0.97 -19.38 2.75 -116.95 -0.32 -19.70 16 12 C 0.22 5.05 4.19 -5.20 -0.02 5.03 16 13 C -0.52 -14.06 8.69 -34.44 -0.30 -14.36 16 14 H 0.08 2.47 7.29 -52.49 -0.38 2.09 16 15 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 16 N -0.89 -26.57 13.96 55.43 0.77 -25.80 16 17 Si 0.86 20.46 27.47 -169.99 -4.67 15.79 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.26 -6.00 6.54 56.52 0.37 -5.63 16 21 C 0.17 2.87 4.35 -5.20 -0.02 2.85 16 22 C 0.12 2.19 5.46 -82.59 -0.45 1.74 16 23 C -0.12 -2.12 8.61 -39.44 -0.34 -2.46 16 24 C -0.08 -1.31 10.18 -39.27 -0.40 -1.71 16 25 C -0.18 -2.79 10.11 -39.44 -0.40 -3.19 16 26 C 0.09 1.48 11.18 -17.55 -0.20 1.28 16 27 N -0.47 -9.21 10.27 -9.47 -0.10 -9.30 16 28 C -0.02 -0.30 9.21 -39.59 -0.36 -0.67 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 31 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 32 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 33 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 34 H 0.09 0.97 6.57 -51.93 -0.34 0.63 16 35 H 0.08 0.77 8.04 -51.93 -0.42 0.36 16 36 H 0.11 1.64 4.00 -51.93 -0.21 1.43 16 37 H 0.03 0.75 6.90 -51.92 -0.36 0.39 16 38 H 0.03 0.63 7.46 -51.93 -0.39 0.25 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.10 1.51 4.18 -51.93 -0.22 1.29 16 41 H 0.09 1.22 7.94 -51.93 -0.41 0.80 16 42 H 0.13 2.27 8.06 -52.49 -0.42 1.85 16 43 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 44 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 45 H 0.15 2.09 8.06 -52.48 -0.42 1.67 16 46 H 0.14 2.32 7.33 -52.49 -0.38 1.94 16 LS Contribution 383.89 15.07 5.79 5.79 Total: -1.00 -35.55 383.89 -11.07 -46.62 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -6.08 Total: 6.45 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: -4.18 Total: -29.88 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: 0.36 Total: -54.80 kcal Atomic # 8 Polarization: -42.66 SS G_CDS: -1.75 Total: -44.41 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.67 Total: 15.79 kcal Atomic # 16 Polarization: 54.98 SS G_CDS: -0.54 Total: 54.45 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.55 -11.07 -46.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069652011.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.575 kcal (2) G-P(sol) polarization free energy of solvation -35.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds