Wall clock time and date at job start Tue Mar 31 2020 06:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38254 * 119.99739 * 2 1 4 4 C 1.38215 * 120.00008 * 180.02562 * 3 2 1 5 5 C 1.38252 * 119.99976 * 0.02562 * 4 3 2 6 6 C 1.50706 * 120.00006 * 179.97438 * 5 4 3 7 7 C 1.38209 * 119.99922 * 359.97438 * 5 4 3 8 8 S 1.76204 * 119.99853 * 179.97438 * 7 5 4 9 9 O 1.42104 * 106.40063 * 181.77257 * 8 7 5 10 10 O 1.42098 * 106.40344 * 48.85040 * 8 7 5 11 11 N 1.65605 * 107.21487 * 295.30944 * 8 7 5 12 12 C 1.46500 * 120.00201 * 278.45505 * 11 8 7 13 13 C 1.50697 * 109.47100 * 265.00360 * 12 11 8 14 14 H 1.07999 * 120.00614 * 359.97438 * 13 12 11 15 15 C 1.37885 * 119.99676 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99622 * 179.97438 * 15 13 12 17 17 Si 1.86794 * 120.00210 * 0.02562 * 15 13 12 18 18 H 1.48507 * 109.47185 * 89.99544 * 17 15 13 19 19 H 1.48498 * 109.47161 * 209.99739 * 17 15 13 20 20 H 1.48500 * 109.47242 * 329.99835 * 17 15 13 21 21 C 1.46494 * 119.99718 * 98.45726 * 11 8 7 22 22 C 1.50703 * 109.47257 * 97.46530 * 21 11 8 23 23 C 1.38225 * 119.61873 * 94.97220 * 22 21 11 24 24 C 1.38634 * 119.16419 * 179.79079 * 23 22 21 25 25 C 1.38675 * 118.41655 * 0.47833 * 24 23 22 26 26 C 1.38183 * 119.16027 * 359.50257 * 25 24 23 27 27 N 1.31852 * 119.61804 * 275.00203 * 22 21 11 28 28 C 1.38206 * 120.00317 * 180.28219 * 2 1 3 29 29 H 1.08994 * 109.47437 * 90.00122 * 1 2 3 30 30 H 1.09005 * 109.46497 * 209.99693 * 1 2 3 31 31 H 1.08995 * 109.46966 * 329.99500 * 1 2 3 32 32 H 1.08009 * 120.00308 * 0.02562 * 3 2 1 33 33 H 1.08006 * 119.99905 * 179.97438 * 4 3 2 34 34 H 1.08994 * 109.46470 * 264.03726 * 6 5 4 35 35 H 1.08996 * 109.47021 * 24.03503 * 6 5 4 36 36 H 1.09000 * 109.46936 * 144.03451 * 6 5 4 37 37 H 1.09008 * 109.46633 * 25.00119 * 12 11 8 38 38 H 1.08998 * 109.47032 * 144.99740 * 12 11 8 39 39 H 0.97000 * 119.99911 * 179.97438 * 16 15 13 40 40 H 1.08994 * 109.47238 * 337.46419 * 21 11 8 41 41 H 1.09002 * 109.47248 * 217.46411 * 21 11 8 42 42 H 1.08000 * 120.42078 * 0.02562 * 23 22 21 43 43 H 1.07999 * 120.79242 * 180.23655 * 24 23 22 44 44 H 1.07999 * 120.41923 * 179.77974 * 25 24 23 45 45 H 1.08006 * 119.61411 * 180.24918 * 26 25 24 46 46 H 1.08002 * 120.00357 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0016 6 6 5.7788 0.0002 -0.0028 7 6 3.5807 -1.1968 -0.0016 8 16 4.4618 -2.7227 -0.0037 9 8 3.4824 -3.7515 -0.0454 10 8 5.4405 -2.6224 1.0217 11 7 5.2909 -2.8081 -1.4347 12 6 4.6058 -3.2466 -2.6531 13 6 4.8286 -4.7238 -2.8507 14 1 5.4215 -5.2804 -2.1400 15 6 4.2754 -5.3650 -3.9389 16 7 4.4702 -6.6541 -4.1115 17 14 3.2504 -4.4023 -5.1685 18 1 4.1313 -3.8740 -6.2411 19 1 2.2251 -5.2956 -5.7651 20 1 2.5802 -3.2720 -4.4769 21 6 6.7093 -2.4450 -1.4821 22 6 7.5503 -3.6926 -1.3962 23 6 8.0019 -4.2934 -2.5563 24 6 8.7785 -5.4382 -2.4662 25 6 9.0648 -5.9440 -1.2071 26 6 8.5787 -5.2888 -0.0918 27 7 7.8464 -4.1989 -0.2153 28 6 2.1981 -1.1968 -0.0059 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3632 -0.8901 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.6582 2.1327 0.0004 33 1 4.1204 2.1328 -0.0010 34 1 6.1412 -0.1061 -1.0252 35 1 6.1424 0.9386 0.4159 36 1 6.1426 -0.8318 0.6001 37 1 3.5377 -3.0494 -2.5604 38 1 5.0029 -2.7015 -3.5094 39 1 4.0807 -7.1053 -4.8768 40 1 6.9449 -1.7897 -0.6437 41 1 6.9210 -1.9280 -2.4181 42 1 7.7560 -3.8740 -3.5207 43 1 9.1484 -5.9268 -3.3554 44 1 9.6639 -6.8361 -1.0994 45 1 8.8006 -5.6740 0.8925 46 1 1.6582 -2.1322 -0.0101 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069652011.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:23 Heat of formation + Delta-G solvation = -23.230502 kcal Electronic energy + Delta-G solvation = -31281.295555 eV Core-core repulsion = 27262.416399 eV Total energy + Delta-G solvation = -4018.879156 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 360.129 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.96215 -40.51156 -38.38164 -37.56481 -36.81821 -34.92576 -34.54866 -33.22300 -32.46767 -32.23783 -30.43867 -29.75014 -27.11069 -25.85034 -24.43446 -24.30646 -23.84681 -22.79238 -22.32762 -19.74796 -19.06296 -18.68938 -17.93563 -17.72368 -17.33733 -16.91396 -16.75018 -16.50996 -16.29510 -15.95549 -15.33153 -15.25180 -15.09415 -14.76724 -14.52805 -14.24944 -14.19722 -14.11707 -13.99835 -13.85515 -13.69898 -13.33610 -13.30695 -13.14942 -13.02009 -12.95285 -12.72243 -12.61357 -12.47809 -12.30025 -12.18274 -12.07991 -11.96114 -11.63878 -11.43817 -10.71201 -10.61452 -10.34778 -10.32839 -9.88183 -9.67474 -9.55338 -8.20136 -6.22585 -0.62022 -0.16225 0.27363 0.35540 0.56109 1.35764 1.40748 1.48613 2.04057 2.38278 2.50676 2.84922 3.04487 3.13477 3.40400 3.51583 3.72063 3.81584 3.90971 3.94255 4.05147 4.14903 4.20581 4.26054 4.38235 4.42154 4.48187 4.57845 4.63855 4.68295 4.72202 4.77130 4.80239 4.83288 4.88141 4.90814 4.99241 5.09550 5.15325 5.22573 5.30589 5.35904 5.39835 5.44510 5.45151 5.52753 5.70732 5.92371 5.96071 6.38843 6.80321 7.23479 7.37410 8.96604 Molecular weight = 360.13amu Principal moments of inertia in cm(-1) A = 0.009641 B = 0.004979 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2903.466381 B = 5622.550803 C = 7475.123377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.120 4.120 3 C -0.059 4.059 4 C -0.136 4.136 5 C 0.005 3.995 6 C -0.185 4.185 7 C -0.685 4.685 8 S 2.683 3.317 9 O -1.001 7.001 10 O -0.965 6.965 11 N -0.971 5.971 12 C 0.230 3.770 13 C -0.513 4.513 14 H 0.031 0.969 15 C 0.014 3.986 16 N -0.944 5.944 17 Si 0.930 3.070 18 H -0.251 1.251 19 H -0.291 1.291 20 H -0.247 1.247 21 C 0.161 3.839 22 C 0.094 3.906 23 C -0.133 4.133 24 C -0.091 4.091 25 C -0.172 4.172 26 C 0.067 3.933 27 N -0.498 5.498 28 C -0.052 4.052 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.169 0.831 33 H 0.169 0.831 34 H 0.104 0.896 35 H 0.114 0.886 36 H 0.087 0.913 37 H 0.026 0.974 38 H 0.064 0.936 39 H 0.263 0.737 40 H 0.117 0.883 41 H 0.125 0.875 42 H 0.139 0.861 43 H 0.147 0.853 44 H 0.159 0.841 45 H 0.170 0.830 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.220 19.064 3.959 19.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.121 4.121 3 C -0.077 4.077 4 C -0.154 4.154 5 C 0.004 3.996 6 C -0.240 4.240 7 C -0.774 4.774 8 S 2.778 3.222 9 O -0.991 6.991 10 O -0.955 6.955 11 N -0.808 5.808 12 C 0.105 3.895 13 C -0.553 4.553 14 H 0.050 0.950 15 C -0.183 4.183 16 N -0.585 5.585 17 Si 0.753 3.247 18 H -0.175 1.175 19 H -0.217 1.217 20 H -0.171 1.171 21 C 0.036 3.964 22 C -0.045 4.045 23 C -0.154 4.154 24 C -0.117 4.117 25 C -0.192 4.192 26 C -0.090 4.090 27 N -0.208 5.208 28 C -0.071 4.071 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.113 0.887 32 H 0.187 0.813 33 H 0.187 0.813 34 H 0.122 0.878 35 H 0.133 0.867 36 H 0.106 0.894 37 H 0.044 0.956 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.135 0.865 41 H 0.142 0.858 42 H 0.157 0.843 43 H 0.165 0.835 44 H 0.177 0.823 45 H 0.187 0.813 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.871 18.722 5.245 19.533 hybrid contribution -0.606 -0.980 -1.549 1.930 sum 1.265 17.742 3.696 18.167 Atomic orbital electron populations 1.20883 0.88637 1.04117 1.03479 1.20369 0.98051 0.92551 1.01162 1.21793 0.94470 0.98391 0.93024 1.21607 0.94744 0.97966 1.01110 1.19835 0.96862 0.91650 0.91279 1.21988 0.89654 1.07220 1.05175 1.30612 1.06480 1.19588 1.20756 1.01883 0.73016 0.74213 0.73069 1.93509 1.62858 1.56206 1.86566 1.93495 1.59575 1.87248 1.55226 1.57057 1.17646 1.80866 1.25258 1.19365 0.92008 0.94229 0.83862 1.21460 1.31656 0.93592 1.08577 0.95023 1.25716 0.97132 0.95597 0.99892 1.70069 1.46896 1.10828 1.30710 0.85987 0.79451 0.79426 0.79856 1.17497 1.21682 1.17112 1.20728 0.77180 0.92354 1.06174 1.21818 0.95611 0.98455 0.88610 1.22054 0.96676 0.96908 0.99760 1.21851 0.96055 0.94903 0.98849 1.22385 1.02013 1.01671 0.93128 1.23111 0.94039 0.91614 1.00212 1.67518 1.12378 1.13006 1.27945 1.20972 0.92084 0.99818 0.94248 0.90169 0.91736 0.88668 0.81320 0.81318 0.87819 0.86729 0.89418 0.95564 0.91842 0.92788 0.86494 0.85754 0.84334 0.83493 0.82313 0.81301 0.86039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.01 10.01 71.24 0.71 -1.30 16 2 C -0.12 -2.90 5.88 -19.87 -0.12 -3.02 16 3 C -0.06 -1.09 9.70 22.27 0.22 -0.88 16 4 C -0.14 -2.65 9.68 22.27 0.22 -2.43 16 5 C 0.01 0.14 5.87 -19.87 -0.12 0.02 16 6 C -0.18 -4.14 7.89 71.24 0.56 -3.57 16 7 C -0.68 -23.45 5.91 22.27 0.13 -23.32 16 8 S 2.68 115.07 4.99 -56.49 -0.28 114.78 16 9 O -1.00 -52.63 16.26 -128.00 -2.08 -54.72 16 10 O -0.97 -42.15 14.37 -128.00 -1.84 -43.99 16 11 N -0.97 -39.43 2.75 -523.92 -1.44 -40.86 16 12 C 0.23 10.39 4.19 85.63 0.36 10.75 16 13 C -0.51 -28.80 8.69 25.60 0.22 -28.57 16 14 H 0.03 2.05 7.29 -2.91 -0.02 2.03 16 15 C 0.01 0.81 5.47 84.66 0.46 1.27 16 16 N -0.94 -58.43 13.96 21.45 0.30 -58.13 16 17 Si 0.93 42.03 27.47 68.60 1.88 43.92 16 18 H -0.25 -10.31 7.11 99.48 0.71 -9.60 16 19 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 20 H -0.25 -10.40 6.54 99.48 0.65 -9.75 16 21 C 0.16 5.41 4.35 85.64 0.37 5.79 16 22 C 0.09 3.67 5.46 42.55 0.23 3.90 16 23 C -0.13 -4.95 8.61 22.36 0.19 -4.75 16 24 C -0.09 -3.09 10.18 22.47 0.23 -2.86 16 25 C -0.17 -5.49 10.11 22.36 0.23 -5.26 16 26 C 0.07 2.38 11.18 84.67 0.95 3.33 16 27 N -0.50 -20.43 10.27 -183.88 -1.89 -22.32 16 28 C -0.05 -1.69 9.21 22.27 0.20 -1.49 16 29 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.06 1.20 8.09 -2.38 -0.02 1.18 16 31 H 0.09 1.12 8.09 -2.39 -0.02 1.10 16 32 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 33 H 0.17 1.92 8.06 -2.91 -0.02 1.89 16 34 H 0.10 1.97 6.57 -2.39 -0.02 1.95 16 35 H 0.11 1.73 8.04 -2.39 -0.02 1.71 16 36 H 0.09 2.49 4.00 -2.39 -0.01 2.48 16 37 H 0.03 1.23 6.90 -2.38 -0.02 1.21 16 38 H 0.06 2.47 7.46 -2.39 -0.02 2.46 16 39 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 40 H 0.12 3.50 4.18 -2.39 -0.01 3.49 16 41 H 0.12 3.18 7.94 -2.39 -0.02 3.16 16 42 H 0.14 4.78 8.06 -2.91 -0.02 4.75 16 43 H 0.15 4.25 8.06 -2.91 -0.02 4.23 16 44 H 0.16 3.84 8.06 -2.91 -0.02 3.82 16 45 H 0.17 4.91 8.06 -2.91 -0.02 4.89 16 46 H 0.12 4.31 7.33 -2.91 -0.02 4.29 16 Total: -1.00 -84.29 383.89 0.65 -83.64 By element: Atomic # 1 Polarization: 29.12 SS G_CDS: 0.95 Total: 30.07 kcal Atomic # 6 Polarization: -57.44 SS G_CDS: 5.05 Total: -52.39 kcal Atomic # 7 Polarization: -118.28 SS G_CDS: -3.03 Total: -121.31 kcal Atomic # 8 Polarization: -94.79 SS G_CDS: -3.92 Total: -98.71 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 1.88 Total: 43.92 kcal Atomic # 16 Polarization: 115.07 SS G_CDS: -0.28 Total: 114.78 kcal Total: -84.29 0.65 -83.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069652011.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.407 kcal (2) G-P(sol) polarization free energy of solvation -84.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds