Wall clock time and date at job start Tue Mar 31 2020 06:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 S 1.70618 * 124.51846 * 269.70062 * 3 2 1 5 5 C 1.75835 * 91.56196 * 179.97438 * 4 3 2 6 6 C 1.46538 * 125.45952 * 180.02562 * 5 4 3 7 7 O 1.21705 * 120.00029 * 180.27386 * 6 5 4 8 8 N 1.34776 * 119.99979 * 0.27212 * 6 5 4 9 9 C 1.39467 * 120.00281 * 180.02562 * 8 6 5 10 10 N 1.32289 * 119.72853 * 359.97438 * 9 8 6 11 11 C 1.31970 * 121.68884 * 179.97438 * 10 9 8 12 12 C 1.38071 * 120.95618 * 0.02562 * 11 10 9 13 13 C 1.38795 * 119.35953 * 359.97438 * 12 11 10 14 14 C 1.38780 * 118.44829 * 359.75554 * 13 12 11 15 15 O 1.35988 * 120.49392 * 180.24249 * 14 13 12 16 16 C 1.42901 * 117.00090 * 0.24833 * 15 14 13 17 17 C 1.52999 * 109.46787 * 179.97438 * 16 15 14 18 18 C 1.50700 * 109.46960 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00149 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00059 * 180.02562 * 18 17 16 21 21 N 1.31518 * 120.00148 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00312 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47163 * 59.99450 * 22 20 18 24 24 H 1.48489 * 109.47463 * 179.97438 * 22 20 18 25 25 H 1.48511 * 109.46821 * 300.00132 * 22 20 18 26 26 C 1.36673 * 109.08019 * 0.31014 * 5 4 3 27 27 C 1.33814 * 124.52206 * 90.00146 * 3 2 1 28 28 C 1.50704 * 122.45095 * 359.95768 * 27 3 2 29 29 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 30 30 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 31 31 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 33 33 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 34 34 H 0.97010 * 120.00115 * 359.97438 * 8 6 5 35 35 H 1.07994 * 119.52117 * 179.97438 * 11 10 9 36 36 H 1.07999 * 120.32209 * 180.02562 * 12 11 10 37 37 H 1.08007 * 120.77488 * 180.02562 * 13 12 11 38 38 H 1.09001 * 109.47277 * 300.00153 * 16 15 14 39 39 H 1.08999 * 109.46602 * 60.00236 * 16 15 14 40 40 H 1.09001 * 109.47478 * 300.00203 * 17 16 15 41 41 H 1.09004 * 109.46747 * 60.00854 * 17 16 15 42 42 H 0.96993 * 120.00490 * 179.97438 * 21 20 18 43 43 H 1.08003 * 123.35236 * 179.72474 * 26 5 4 44 44 H 1.09003 * 109.47294 * 89.99421 * 28 27 3 45 45 H 1.08994 * 109.47665 * 210.00099 * 28 27 3 46 46 H 1.09003 * 109.46694 * 330.00078 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 16 2.3615 2.3300 -1.4058 5 6 2.8478 3.7229 -0.4492 6 6 3.3037 5.0070 -0.9883 7 8 3.6221 5.9059 -0.2321 8 7 3.3706 5.1926 -2.3216 9 6 3.8050 6.4145 -2.8347 10 7 4.1498 7.3879 -2.0078 11 6 4.5666 8.5590 -2.4511 12 6 4.6587 8.8141 -3.8049 13 6 4.3075 7.8220 -4.7098 14 6 3.8779 6.5984 -4.2155 15 8 3.5282 5.5955 -5.0648 16 6 3.6311 5.8650 -6.4643 17 6 3.1992 4.6283 -7.2549 18 6 3.3071 4.9127 -8.7309 19 1 3.6499 5.8787 -9.0710 20 6 2.9682 3.9397 -9.6470 21 7 2.5503 2.7635 -9.2328 22 14 3.1026 4.2919 -11.4765 23 1 4.5092 4.6281 -11.8139 24 1 2.6833 3.0917 -12.2438 25 1 2.2227 5.4360 -11.8263 26 6 2.7384 3.4140 0.8776 27 6 2.2851 2.1358 1.1025 28 6 2.0877 1.5804 2.4895 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 3.1172 4.4760 -2.9244 35 1 4.8389 9.3291 -1.7447 36 1 5.0016 9.7760 -4.1564 37 1 4.3711 7.9967 -5.7737 38 1 2.9853 6.7047 -6.7211 39 1 4.6636 6.1117 -6.7118 40 1 3.8453 3.7889 -6.9980 41 1 2.1668 4.3813 -7.0074 42 1 2.3115 2.0790 -9.8773 43 1 2.9839 4.1051 1.6704 44 1 3.0088 1.1032 2.8242 45 1 1.8292 2.3900 3.1718 46 1 1.2825 0.8458 2.4754 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069664198.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:12 Heat of formation + Delta-G solvation = -12.948939 kcal Electronic energy + Delta-G solvation = -28447.456650 eV Core-core repulsion = 24429.023335 eV Total energy + Delta-G solvation = -4018.433314 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 360.129 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.90518 -39.50119 -38.54885 -37.74754 -34.85802 -34.03047 -33.47913 -31.71079 -30.90366 -30.36588 -29.13865 -27.67284 -25.55113 -25.21628 -23.41018 -22.84346 -22.42746 -21.09903 -20.44316 -19.11771 -18.19365 -18.05766 -17.45874 -16.47952 -16.18282 -15.84168 -15.80859 -15.20633 -15.06633 -14.71766 -14.57890 -14.55490 -14.42336 -13.97383 -13.83120 -13.49302 -13.35502 -12.88681 -12.85056 -12.45520 -12.40954 -12.39458 -12.03756 -11.97548 -11.87643 -11.60455 -11.39614 -11.08633 -10.98302 -10.91343 -10.76659 -10.69704 -10.37594 -10.05413 -9.78684 -9.43375 -9.24857 -9.10173 -8.83503 -8.56728 -8.52140 -7.68736 -6.17994 -4.23066 0.31605 1.23701 1.29618 1.43385 1.72574 2.19744 2.81239 3.15948 3.23591 3.28203 3.29286 3.51076 4.01009 4.33280 4.35270 4.39808 4.69598 4.76178 4.91922 4.93683 4.96219 5.05977 5.09201 5.16750 5.18751 5.24690 5.36528 5.44385 5.45036 5.53351 5.60383 5.65316 5.73291 5.85276 5.89094 5.89290 6.03804 6.10771 6.16949 6.25474 6.30980 6.53040 6.60003 7.18039 7.33550 7.52378 7.62489 7.84215 8.00992 8.13994 8.28636 8.81826 9.41784 10.93377 Molecular weight = 360.13amu Principal moments of inertia in cm(-1) A = 0.007898 B = 0.002730 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3544.374204 B =10254.073245 C =13677.123510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.056 4.056 3 C -0.194 4.194 4 S 0.215 5.785 5 C -0.270 4.270 6 C 0.584 3.416 7 O -0.470 6.470 8 N -0.648 5.648 9 C 0.329 3.671 10 N -0.443 5.443 11 C 0.076 3.924 12 C -0.158 4.158 13 C -0.147 4.147 14 C 0.069 3.931 15 O -0.316 6.316 16 C 0.066 3.934 17 C 0.027 3.973 18 C -0.529 4.529 19 H 0.058 0.942 20 C 0.062 3.938 21 N -0.889 5.889 22 Si 0.899 3.101 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 C -0.045 4.045 27 C -0.125 4.125 28 C -0.092 4.092 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.421 0.579 35 H 0.158 0.842 36 H 0.135 0.865 37 H 0.146 0.854 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.028 0.972 41 H 0.028 0.972 42 H 0.265 0.735 43 H 0.152 0.848 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.837 -0.909 20.156 20.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.095 4.095 3 C -0.313 4.313 4 S 0.485 5.515 5 C -0.390 4.390 6 C 0.369 3.631 7 O -0.342 6.342 8 N -0.296 5.296 9 C 0.096 3.904 10 N -0.158 5.158 11 C -0.081 4.081 12 C -0.179 4.179 13 C -0.174 4.174 14 C 0.017 3.983 15 O -0.229 6.229 16 C -0.008 4.008 17 C -0.010 4.010 18 C -0.567 4.567 19 H 0.076 0.924 20 C -0.140 4.140 21 N -0.526 5.526 22 Si 0.726 3.274 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 C -0.079 4.079 27 C -0.138 4.138 28 C -0.151 4.151 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.259 0.741 35 H 0.175 0.825 36 H 0.153 0.847 37 H 0.164 0.836 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.074 0.926 43 H 0.170 0.830 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.911 -1.148 20.004 20.058 hybrid contribution 0.170 0.420 -0.999 1.097 sum -0.741 -0.728 19.005 19.033 Atomic orbital electron populations 1.21798 0.93993 1.02210 1.02698 1.20158 0.96444 0.89329 1.03598 1.24128 1.07605 1.02194 0.97412 1.83384 1.59312 1.01983 1.06809 1.24451 1.17028 0.99234 0.98331 1.17017 0.78307 0.86050 0.81679 1.90910 1.44759 1.41539 1.56970 1.43252 1.64991 1.13760 1.07581 1.17702 0.99461 0.87643 0.85558 1.67619 1.11729 1.00166 1.36283 1.22421 0.98329 0.93439 0.93927 1.21906 1.01992 1.00090 0.93943 1.21614 1.01870 0.92299 1.01577 1.19583 0.99201 0.90050 0.89433 1.86108 1.81185 1.36189 1.19415 1.23415 1.00211 1.02623 0.74580 1.19126 0.97944 0.90871 0.93099 1.20903 1.46053 0.99661 0.90090 0.92391 1.24973 0.94797 0.94910 0.99365 1.69950 1.43779 1.04186 1.34731 0.86549 0.78649 0.77804 0.84396 1.20067 1.21077 1.20062 1.20570 0.96606 0.95739 0.94983 1.18627 1.04679 0.93942 0.96511 1.20502 1.02065 1.01006 0.91530 0.92245 0.92145 0.91823 0.89768 0.90403 0.74111 0.82500 0.84682 0.83617 0.92876 0.92883 0.95318 0.95320 0.92579 0.83005 0.91265 0.91374 0.91420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.89 37.16 0.37 -0.66 16 2 C -0.06 -0.42 5.72 -27.88 -0.16 -0.58 16 3 C -0.19 -1.90 5.53 -35.86 -0.20 -2.10 16 4 S 0.21 2.45 22.10 -107.50 -2.38 0.07 16 5 C -0.27 -3.61 6.45 -36.80 -0.24 -3.85 16 6 C 0.58 9.45 7.74 -12.92 -0.10 9.35 16 7 O -0.47 -8.82 15.09 5.18 0.08 -8.74 16 8 N -0.65 -10.52 5.38 -12.52 -0.07 -10.59 16 9 C 0.33 5.71 7.44 -154.52 -1.15 4.56 16 10 N -0.44 -7.63 7.87 -12.24 -0.10 -7.73 16 11 C 0.08 1.04 11.17 -17.55 -0.20 0.84 16 12 C -0.16 -1.98 10.10 -39.44 -0.40 -2.38 16 13 C -0.15 -2.16 9.14 -39.18 -0.36 -2.52 16 14 C 0.07 1.18 6.72 -38.91 -0.26 0.91 16 15 O -0.32 -5.95 9.38 -19.70 -0.18 -6.13 16 16 C 0.07 1.30 4.70 37.16 0.17 1.47 16 17 C 0.03 0.66 5.34 -27.88 -0.15 0.51 16 18 C -0.53 -14.09 9.11 -34.44 -0.31 -14.41 16 19 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -25.46 13.29 55.43 0.74 -24.72 16 22 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 26 C -0.05 -0.53 9.80 -40.43 -0.40 -0.93 16 27 C -0.12 -1.24 5.78 -106.45 -0.62 -1.85 16 28 C -0.09 -0.65 9.55 36.01 0.34 -0.30 16 29 H 0.06 0.40 7.80 -51.93 -0.41 -0.01 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.52 7.25 -51.93 -0.38 0.14 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.42 6.34 7.16 -40.82 -0.29 6.05 16 35 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 36 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 37 H 0.15 1.96 6.44 -52.48 -0.34 1.63 16 38 H 0.05 1.00 7.69 -51.93 -0.40 0.60 16 39 H 0.05 1.00 7.71 -51.93 -0.40 0.60 16 40 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.15 1.69 8.06 -52.48 -0.42 1.26 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.43 8.13 -51.93 -0.42 0.01 16 46 H 0.07 0.40 6.86 -51.93 -0.36 0.05 16 LS Contribution 401.74 15.07 6.05 6.05 Total: -1.00 -32.19 401.74 -10.96 -43.15 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -6.34 Total: 3.35 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -3.74 Total: -10.32 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: 0.57 Total: -43.04 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -0.11 Total: -14.87 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -2.38 Total: 0.07 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.19 -10.96 -43.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069664198.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.201 kcal (2) G-P(sol) polarization free energy of solvation -32.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds