Wall clock time and date at job start Tue Mar 31 2020 06:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 S 1.70618 * 124.51846 * 269.70062 * 3 2 1 5 5 C 1.75835 * 91.56196 * 179.97438 * 4 3 2 6 6 C 1.46538 * 125.45952 * 180.02562 * 5 4 3 7 7 O 1.21705 * 120.00029 * 180.27386 * 6 5 4 8 8 N 1.34776 * 119.99979 * 0.27212 * 6 5 4 9 9 C 1.39467 * 120.00281 * 180.02562 * 8 6 5 10 10 N 1.32289 * 119.72853 * 359.97438 * 9 8 6 11 11 C 1.31970 * 121.68884 * 179.97438 * 10 9 8 12 12 C 1.38071 * 120.95618 * 0.02562 * 11 10 9 13 13 C 1.38795 * 119.35953 * 359.97438 * 12 11 10 14 14 C 1.38780 * 118.44829 * 359.75554 * 13 12 11 15 15 O 1.35988 * 120.49392 * 180.24249 * 14 13 12 16 16 C 1.42901 * 117.00090 * 0.24833 * 15 14 13 17 17 C 1.52999 * 109.46787 * 179.97438 * 16 15 14 18 18 C 1.50700 * 109.46960 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00149 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00059 * 180.02562 * 18 17 16 21 21 N 1.31518 * 120.00148 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00312 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47163 * 59.99450 * 22 20 18 24 24 H 1.48489 * 109.47463 * 179.97438 * 22 20 18 25 25 H 1.48511 * 109.46821 * 300.00132 * 22 20 18 26 26 C 1.36673 * 109.08019 * 0.31014 * 5 4 3 27 27 C 1.33814 * 124.52206 * 90.00146 * 3 2 1 28 28 C 1.50704 * 122.45095 * 359.95768 * 27 3 2 29 29 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 30 30 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 31 31 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 33 33 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 34 34 H 0.97010 * 120.00115 * 359.97438 * 8 6 5 35 35 H 1.07994 * 119.52117 * 179.97438 * 11 10 9 36 36 H 1.07999 * 120.32209 * 180.02562 * 12 11 10 37 37 H 1.08007 * 120.77488 * 180.02562 * 13 12 11 38 38 H 1.09001 * 109.47277 * 300.00153 * 16 15 14 39 39 H 1.08999 * 109.46602 * 60.00236 * 16 15 14 40 40 H 1.09001 * 109.47478 * 300.00203 * 17 16 15 41 41 H 1.09004 * 109.46747 * 60.00854 * 17 16 15 42 42 H 0.96993 * 120.00490 * 179.97438 * 21 20 18 43 43 H 1.08003 * 123.35236 * 179.72474 * 26 5 4 44 44 H 1.09003 * 109.47294 * 89.99421 * 28 27 3 45 45 H 1.08994 * 109.47665 * 210.00099 * 28 27 3 46 46 H 1.09003 * 109.46694 * 330.00078 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 16 2.3615 2.3300 -1.4058 5 6 2.8478 3.7229 -0.4492 6 6 3.3037 5.0070 -0.9883 7 8 3.6221 5.9059 -0.2321 8 7 3.3706 5.1926 -2.3216 9 6 3.8050 6.4145 -2.8347 10 7 4.1498 7.3879 -2.0078 11 6 4.5666 8.5590 -2.4511 12 6 4.6587 8.8141 -3.8049 13 6 4.3075 7.8220 -4.7098 14 6 3.8779 6.5984 -4.2155 15 8 3.5282 5.5955 -5.0648 16 6 3.6311 5.8650 -6.4643 17 6 3.1992 4.6283 -7.2549 18 6 3.3071 4.9127 -8.7309 19 1 3.6499 5.8787 -9.0710 20 6 2.9682 3.9397 -9.6470 21 7 2.5503 2.7635 -9.2328 22 14 3.1026 4.2919 -11.4765 23 1 4.5092 4.6281 -11.8139 24 1 2.6833 3.0917 -12.2438 25 1 2.2227 5.4360 -11.8263 26 6 2.7384 3.4140 0.8776 27 6 2.2851 2.1358 1.1025 28 6 2.0877 1.5804 2.4895 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 3.1172 4.4760 -2.9244 35 1 4.8389 9.3291 -1.7447 36 1 5.0016 9.7760 -4.1564 37 1 4.3711 7.9967 -5.7737 38 1 2.9853 6.7047 -6.7211 39 1 4.6636 6.1117 -6.7118 40 1 3.8453 3.7889 -6.9980 41 1 2.1668 4.3813 -7.0074 42 1 2.3115 2.0790 -9.8773 43 1 2.9839 4.1051 1.6704 44 1 3.0088 1.1032 2.8242 45 1 1.8292 2.3900 3.1718 46 1 1.2825 0.8458 2.4754 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069664198.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:11 Heat of formation + Delta-G solvation = -30.164886 kcal Electronic energy + Delta-G solvation = -28448.203189 eV Core-core repulsion = 24429.023335 eV Total energy + Delta-G solvation = -4019.179854 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 360.129 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.12939 -40.65048 -39.54002 -39.04909 -36.10160 -35.45621 -34.76901 -32.96371 -32.38549 -31.43502 -30.36583 -28.40329 -27.18833 -26.34678 -24.72727 -23.91910 -23.31271 -22.67987 -21.65019 -20.16261 -19.39743 -19.10725 -18.76239 -18.03880 -17.55977 -17.23584 -16.92067 -16.50573 -16.42550 -16.18264 -15.69268 -15.37861 -15.24836 -15.21618 -14.85377 -14.60435 -14.35753 -14.20132 -14.04349 -13.66406 -13.46578 -13.33924 -13.18469 -13.03187 -12.82986 -12.73092 -12.68464 -12.46158 -12.25240 -12.08912 -11.98319 -11.73975 -11.66879 -11.66565 -11.56742 -11.42734 -10.60332 -10.47066 -10.31099 -9.75913 -9.43913 -8.92645 -8.25268 -6.38108 -0.65180 0.10387 0.24974 0.37323 0.84822 1.29168 1.42450 1.45223 1.53005 1.65579 2.02904 2.07667 2.43856 2.83405 3.09797 3.27461 3.61685 3.69097 3.82001 3.96347 4.05943 4.08872 4.15459 4.27953 4.31050 4.37305 4.41454 4.43463 4.49035 4.73035 4.77138 4.82188 4.86952 4.92945 4.99298 5.04147 5.07060 5.10729 5.16208 5.28587 5.30012 5.38349 5.49350 5.49650 5.52686 5.72278 5.99909 6.07270 6.28796 6.76296 6.78642 7.10569 7.31865 8.87222 Molecular weight = 360.13amu Principal moments of inertia in cm(-1) A = 0.007898 B = 0.002730 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3544.374204 B =10254.073245 C =13677.123510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.058 4.058 3 C -0.180 4.180 4 S 0.198 5.802 5 C -0.301 4.301 6 C 0.583 3.417 7 O -0.506 6.506 8 N -0.651 5.651 9 C 0.306 3.694 10 N -0.473 5.473 11 C 0.075 3.925 12 C -0.140 4.140 13 C -0.146 4.146 14 C 0.043 3.957 15 O -0.332 6.332 16 C 0.083 3.917 17 C 0.030 3.970 18 C -0.545 4.545 19 H 0.072 0.928 20 C 0.005 3.995 21 N -0.929 5.929 22 Si 0.970 3.030 23 H -0.265 1.265 24 H -0.285 1.285 25 H -0.265 1.265 26 C -0.038 4.038 27 C -0.131 4.131 28 C -0.090 4.090 29 H 0.062 0.938 30 H 0.045 0.955 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.422 0.578 35 H 0.190 0.810 36 H 0.180 0.820 37 H 0.161 0.839 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.001 0.999 41 H 0.001 0.999 42 H 0.266 0.734 43 H 0.155 0.845 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.468 0.043 20.319 20.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.097 4.097 3 C -0.300 4.300 4 S 0.468 5.532 5 C -0.421 4.421 6 C 0.371 3.629 7 O -0.381 6.381 8 N -0.298 5.298 9 C 0.075 3.925 10 N -0.188 5.188 11 C -0.082 4.082 12 C -0.160 4.160 13 C -0.173 4.173 14 C -0.008 4.008 15 O -0.246 6.246 16 C 0.008 3.992 17 C -0.007 4.007 18 C -0.583 4.583 19 H 0.090 0.910 20 C -0.194 4.194 21 N -0.568 5.568 22 Si 0.794 3.206 23 H -0.189 1.189 24 H -0.210 1.210 25 H -0.189 1.189 26 C -0.072 4.072 27 C -0.143 4.143 28 C -0.149 4.149 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.099 0.901 32 H 0.124 0.876 33 H 0.098 0.902 34 H 0.259 0.741 35 H 0.207 0.793 36 H 0.198 0.802 37 H 0.178 0.822 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.075 0.925 43 H 0.173 0.827 44 H 0.099 0.901 45 H 0.093 0.907 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.542 -0.192 20.167 20.175 hybrid contribution 0.065 0.157 -0.928 0.944 sum -0.477 -0.036 19.238 19.244 Atomic orbital electron populations 1.21799 0.93352 1.03202 1.02217 1.20321 0.96873 0.87678 1.04804 1.24519 1.06086 1.03051 0.96305 1.83441 1.59779 1.01915 1.08034 1.24279 1.19626 0.98959 0.99246 1.17381 0.77524 0.86664 0.81368 1.90857 1.46746 1.42944 1.57517 1.43333 1.64900 1.13795 1.07774 1.17913 1.00519 0.88181 0.85897 1.67664 1.12746 1.01330 1.37065 1.23121 0.96699 0.92903 0.95506 1.22332 0.99716 1.01073 0.92883 1.21934 1.00860 0.91671 1.02785 1.19742 1.01250 0.90773 0.89010 1.86038 1.82177 1.37458 1.18894 1.22997 1.00931 1.00204 0.75027 1.18946 0.95772 0.92307 0.93714 1.21361 1.45634 1.00244 0.91066 0.91024 1.25962 0.94326 0.94629 1.04522 1.70094 1.44947 1.05313 1.36436 0.85419 0.79175 0.77794 0.78191 1.18939 1.21013 1.18926 1.20823 0.95405 0.96615 0.94378 1.18908 1.04143 0.93088 0.98127 1.20589 1.03228 1.01598 0.89494 0.91853 0.93537 0.90112 0.87552 0.90163 0.74054 0.79309 0.80250 0.82184 0.91587 0.91606 0.98069 0.98072 0.92506 0.82745 0.90114 0.90683 0.89867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.89 71.98 0.71 -1.09 16 2 C -0.06 -0.77 5.72 29.85 0.17 -0.60 16 3 C -0.18 -3.43 5.53 24.68 0.14 -3.29 16 4 S 0.20 4.76 22.10 -56.49 -1.25 3.51 16 5 C -0.30 -8.53 6.45 24.07 0.16 -8.37 16 6 C 0.58 20.14 7.74 86.41 0.67 20.81 16 7 O -0.51 -20.00 15.09 -4.37 -0.07 -20.06 16 8 N -0.65 -22.63 5.38 -311.75 -1.68 -24.31 16 9 C 0.31 11.00 7.44 133.03 0.99 11.99 16 10 N -0.47 -16.41 7.87 -192.65 -1.52 -17.92 16 11 C 0.07 1.92 11.17 84.63 0.95 2.86 16 12 C -0.14 -3.07 10.10 22.36 0.23 -2.84 16 13 C -0.15 -4.04 9.14 22.53 0.21 -3.83 16 14 C 0.04 1.48 6.72 22.70 0.15 1.64 16 15 O -0.33 -12.94 9.38 -93.42 -0.88 -13.82 16 16 C 0.08 3.29 4.70 71.98 0.34 3.63 16 17 C 0.03 1.53 5.34 29.85 0.16 1.69 16 18 C -0.55 -29.24 9.11 25.60 0.23 -29.01 16 19 H 0.07 3.56 7.74 -2.91 -0.02 3.53 16 20 C 0.00 0.25 5.46 84.65 0.46 0.71 16 21 N -0.93 -54.54 13.29 21.45 0.28 -54.26 16 22 Si 0.97 42.03 29.54 68.60 2.03 44.06 16 23 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 24 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 25 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 26 C -0.04 -0.91 9.80 21.72 0.21 -0.69 16 27 C -0.13 -2.48 5.78 -21.05 -0.12 -2.60 16 28 C -0.09 -1.07 9.55 71.24 0.68 -0.39 16 29 H 0.06 0.73 7.80 -2.39 -0.02 0.71 16 30 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.11 1.00 7.25 -2.39 -0.02 0.98 16 33 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.42 13.95 7.16 -92.70 -0.66 13.28 16 35 H 0.19 3.46 8.06 -2.91 -0.02 3.44 16 36 H 0.18 2.35 8.06 -2.91 -0.02 2.33 16 37 H 0.16 3.91 6.44 -2.91 -0.02 3.89 16 38 H 0.07 2.44 7.69 -2.39 -0.02 2.42 16 39 H 0.07 2.43 7.71 -2.39 -0.02 2.41 16 40 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 41 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 42 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 43 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 44 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.07 0.80 8.13 -2.39 -0.02 0.78 16 46 H 0.08 0.74 6.86 -2.39 -0.02 0.72 16 Total: -1.00 -72.55 401.74 3.61 -68.94 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: 0.35 Total: 23.25 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: 6.33 Total: -9.39 kcal Atomic # 7 Polarization: -93.58 SS G_CDS: -2.91 Total: -96.49 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -0.94 Total: -33.88 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Atomic # 16 Polarization: 4.76 SS G_CDS: -1.25 Total: 3.51 kcal Total: -72.55 3.61 -68.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069664198.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.776 kcal (2) G-P(sol) polarization free energy of solvation -72.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds