Wall clock time and date at job start Tue Mar 31 2020 05:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34894 * 116.99954 * 2 1 4 4 O 1.21627 * 120.00428 * 0.02562 * 3 2 1 5 5 C 1.46395 * 120.00049 * 179.97438 * 3 2 1 6 6 C 1.36743 * 125.46685 * 179.97438 * 5 3 2 7 7 C 1.37418 * 113.29151 * 179.71501 * 6 5 3 8 8 C 1.33858 * 115.10608 * 0.49253 * 7 6 5 9 9 S 1.76203 * 124.51730 * 179.78502 * 8 7 6 10 10 O 1.42104 * 106.40099 * 336.18233 * 9 8 7 11 11 O 1.42098 * 106.40243 * 203.26391 * 9 8 7 12 12 N 1.65597 * 107.21868 * 89.72635 * 9 8 7 13 13 C 1.46957 * 120.59424 * 89.99704 * 12 9 8 14 14 C 1.53378 * 108.63600 * 235.20438 * 13 12 9 15 15 N 1.46960 * 108.63441 * 310.57541 * 14 13 12 16 16 C 1.36929 * 120.59772 * 235.19929 * 15 14 13 17 17 H 1.08001 * 120.00154 * 26.80307 * 16 15 14 18 18 C 1.38818 * 120.00276 * 206.52209 * 16 15 14 19 19 N 1.31616 * 120.00013 * 217.35632 * 18 16 15 20 20 Si 1.86795 * 119.99797 * 37.35637 * 18 16 15 21 21 H 1.48497 * 109.47307 * 95.28345 * 20 18 16 22 22 H 1.48499 * 109.46918 * 215.28171 * 20 18 16 23 23 H 1.48500 * 109.47058 * 335.28197 * 20 18 16 24 24 C 1.46972 * 118.81093 * 55.48291 * 15 14 13 25 25 C 1.46973 * 120.59170 * 269.97886 * 12 9 8 26 26 S 1.70619 * 110.96299 * 359.52143 * 8 7 6 27 27 H 1.09001 * 109.47401 * 59.99713 * 1 2 3 28 28 H 1.09004 * 109.47450 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46946 * 300.00160 * 1 2 3 30 30 H 1.08008 * 123.35493 * 359.97438 * 6 5 3 31 31 H 1.07999 * 122.44687 * 180.29885 * 7 6 5 32 32 H 1.09004 * 109.60829 * 115.46229 * 13 12 9 33 33 H 1.08993 * 109.75563 * 355.03688 * 13 12 9 34 34 H 1.09001 * 109.60979 * 190.83526 * 14 13 12 35 35 H 1.08998 * 109.74677 * 70.41012 * 14 13 12 36 36 H 0.97000 * 120.00046 * 180.02562 * 19 18 16 37 37 H 1.09002 * 109.61298 * 64.25873 * 24 15 14 38 38 H 1.08995 * 109.61261 * 184.77395 * 24 15 14 39 39 H 1.08994 * 109.60538 * 244.53803 * 25 12 9 40 40 H 1.09004 * 109.60748 * 4.87917 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2019 0.0000 4 8 1.4020 2.2220 0.0005 5 6 3.5263 1.2786 0.0006 6 6 4.2604 2.4323 0.0001 7 6 5.6170 2.2132 0.0071 8 6 5.9844 0.9260 0.0027 9 16 7.6546 0.3645 0.0043 10 8 8.4337 1.4210 -0.5400 11 8 7.6371 -0.9482 -0.5396 12 7 8.1179 0.2089 1.5865 13 6 7.9239 -1.0604 2.3013 14 6 7.1126 -0.7872 3.5740 15 7 7.7256 0.3414 4.2883 16 6 8.1086 0.2128 5.5967 17 1 8.3751 -0.7577 5.9885 18 6 8.1599 1.3308 6.4180 19 7 9.1165 1.4452 7.3148 20 14 6.8714 2.6727 6.2504 21 1 5.7863 2.4432 7.2377 22 1 7.4983 3.9951 6.5024 23 1 6.3054 2.6468 4.8777 24 6 7.9143 1.6126 3.5752 25 6 8.7307 1.3377 2.3009 26 16 4.6200 -0.0983 0.0025 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 3.8180 3.4176 -0.0011 31 1 6.3343 3.0206 0.0125 32 1 8.8931 -1.4815 2.5687 33 1 7.3830 -1.7619 1.6662 34 1 7.1222 -1.6718 4.2108 35 1 6.0851 -0.5381 3.3093 36 1 9.1521 2.2262 7.8889 37 1 6.9434 2.0298 3.3079 38 1 8.4534 2.3132 4.2128 39 1 9.7573 1.0873 2.5682 40 1 8.7239 2.2214 1.6629 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069737610.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:47 Heat of formation + Delta-G solvation = -74.661089 kcal Electronic energy + Delta-G solvation = -28454.190797 eV Core-core repulsion = 24296.859205 eV Total energy + Delta-G solvation = -4157.331592 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 360.069 amu Computer time = 2.52 seconds Orbital eigenvalues (eV) -40.74201 -38.25472 -37.96160 -37.29352 -36.69500 -35.93195 -33.99445 -31.50154 -30.97165 -30.74945 -28.20990 -26.70317 -25.65975 -23.57449 -23.04659 -22.48832 -20.84214 -20.10713 -19.50897 -18.61914 -17.84192 -17.50209 -16.80516 -16.65307 -16.40251 -16.09442 -15.69988 -15.00668 -14.57068 -14.36669 -14.29931 -14.10067 -13.98455 -13.67844 -13.48847 -13.24850 -12.97611 -12.94439 -12.56893 -12.49873 -12.29303 -12.16104 -11.87937 -11.75861 -11.73198 -11.31478 -11.24771 -11.08850 -11.05282 -10.89728 -10.54949 -10.31257 -10.17622 -9.69757 -9.54912 -9.14615 -8.94920 -8.42786 -7.09254 -6.14734 -3.33218 -0.38737 0.28428 1.00870 1.37361 1.65210 2.17309 2.46736 2.91664 3.31535 3.44321 3.49174 3.62512 4.33878 4.35833 4.47211 4.71018 4.76271 4.77419 4.80130 4.91063 4.95767 5.12448 5.26969 5.38549 5.48300 5.49558 5.64955 5.81075 5.82281 5.86089 5.92249 5.96137 6.18389 6.27432 6.47939 6.50331 6.75236 6.84379 7.20206 7.82569 8.19820 8.83157 9.61897 10.01821 10.99550 Molecular weight = 360.07amu Principal moments of inertia in cm(-1) A = 0.010021 B = 0.004172 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2793.392904 B = 6710.391309 C = 8228.998548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.355 6.355 3 C 0.540 3.460 4 O -0.490 6.490 5 C -0.236 4.236 6 C -0.066 4.066 7 C -0.020 4.020 8 C -0.808 4.808 9 S 2.707 3.293 10 O -0.946 6.946 11 O -0.952 6.952 12 N -0.980 5.980 13 C 0.101 3.899 14 C 0.130 3.870 15 N -0.595 5.595 16 C -0.276 4.276 17 H 0.083 0.917 18 C 0.041 3.959 19 N -0.876 5.876 20 Si 0.832 3.168 21 H -0.293 1.293 22 H -0.293 1.293 23 H -0.257 1.257 24 C 0.130 3.870 25 C 0.100 3.900 26 S 0.372 5.628 27 H 0.066 0.934 28 H 0.107 0.893 29 H 0.067 0.933 30 H 0.164 0.836 31 H 0.163 0.837 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.025 0.975 36 H 0.264 0.736 37 H 0.032 0.968 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.606 -2.842 -16.508 20.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.272 6.272 3 C 0.382 3.618 4 O -0.379 6.379 5 C -0.357 4.357 6 C -0.101 4.101 7 C -0.056 4.056 8 C -1.009 5.009 9 S 2.792 3.208 10 O -0.937 6.937 11 O -0.942 6.942 12 N -0.820 5.820 13 C -0.025 4.025 14 C 0.003 3.997 15 N -0.318 5.318 16 C -0.403 4.403 17 H 0.101 0.899 18 C -0.160 4.160 19 N -0.516 5.516 20 Si 0.658 3.342 21 H -0.220 1.220 22 H -0.220 1.220 23 H -0.182 1.182 24 C 0.002 3.998 25 C -0.027 4.027 26 S 0.646 5.354 27 H 0.085 0.915 28 H 0.125 0.875 29 H 0.086 0.914 30 H 0.181 0.819 31 H 0.181 0.819 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.043 0.957 36 H 0.073 0.927 37 H 0.050 0.950 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.470 -4.298 -17.077 21.015 hybrid contribution -1.482 2.880 0.544 3.284 sum -12.952 -1.418 -16.532 21.049 Atomic orbital electron populations 1.23367 0.74952 1.04263 1.02957 1.86584 1.24400 1.31772 1.84396 1.19603 0.86944 0.82035 0.73171 1.90911 1.65858 1.35805 1.45282 1.24152 0.94684 1.00394 1.16469 1.20954 0.92498 0.98887 0.97787 1.19727 0.96136 0.94973 0.94720 1.36001 1.31780 1.08499 1.24620 1.01844 0.72433 0.73523 0.73036 1.93575 1.65961 1.57569 1.76559 1.93584 1.86526 1.37360 1.76713 1.57432 1.73823 1.20494 1.30273 1.22155 1.02394 0.82943 0.95029 1.21354 0.93606 0.92715 0.92068 1.44204 1.69951 1.08304 1.09383 1.18763 1.40167 0.96303 0.85064 0.89914 1.25193 0.97529 0.96982 0.96340 1.70119 1.28115 1.29346 1.24007 0.87655 0.85359 0.82033 0.79127 1.22036 1.21987 1.18184 1.21809 0.96867 0.89478 0.91640 1.22358 0.98543 0.86736 0.95033 1.83048 0.88760 1.03024 1.60606 0.91527 0.87467 0.91421 0.81864 0.81941 0.90140 0.89943 0.90500 0.95727 0.92666 0.94991 0.90300 0.89997 0.89998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.57 101.05 1.07 1.33 16 2 O -0.35 -3.71 10.42 -41.02 -0.43 -4.14 16 3 C 0.54 6.66 7.92 34.01 0.27 6.93 16 4 O -0.49 -6.92 16.64 -19.36 -0.32 -7.25 16 5 C -0.24 -2.87 6.45 -36.84 -0.24 -3.10 16 6 C -0.07 -0.76 10.01 -40.42 -0.40 -1.17 16 7 C -0.02 -0.24 9.77 -41.42 -0.40 -0.64 16 8 C -0.81 -10.48 6.35 29.19 0.19 -10.29 16 9 S 2.71 39.29 5.82 -107.50 -0.63 38.67 16 10 O -0.95 -15.23 16.44 -57.17 -0.94 -16.17 16 11 O -0.95 -14.89 16.52 -57.17 -0.94 -15.84 16 12 N -0.98 -14.97 3.26 -113.00 -0.37 -15.34 16 13 C 0.10 1.51 6.54 -3.60 -0.02 1.49 16 14 C 0.13 2.27 6.67 -3.60 -0.02 2.24 16 15 N -0.60 -12.88 2.71 -171.76 -0.47 -13.35 16 16 C -0.28 -7.13 9.84 -15.06 -0.15 -7.27 16 17 H 0.08 2.28 8.05 -52.49 -0.42 1.86 16 18 C 0.04 1.12 4.80 -17.43 -0.08 1.03 16 19 N -0.88 -25.27 13.97 55.49 0.78 -24.50 16 20 Si 0.83 20.14 26.46 -169.99 -4.50 15.64 16 21 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 23 H -0.26 -5.85 4.99 56.52 0.28 -5.57 16 24 C 0.13 2.55 4.58 -3.36 -0.02 2.54 16 25 C 0.10 1.63 6.57 -3.36 -0.02 1.60 16 26 S 0.37 4.38 22.68 -107.50 -2.44 1.94 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.16 1.60 8.06 -52.48 -0.42 1.18 16 31 H 0.16 1.64 8.02 -52.49 -0.42 1.22 16 32 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.08 1.03 7.10 -51.93 -0.37 0.67 16 34 H 0.08 1.29 7.93 -51.93 -0.41 0.88 16 35 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.03 0.62 6.78 -51.93 -0.35 0.27 16 38 H 0.08 1.69 5.59 -51.93 -0.29 1.40 16 39 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 40 H 0.08 1.16 7.09 -51.93 -0.37 0.79 16 LS Contribution 359.98 15.07 5.42 5.42 Total: -1.00 -33.08 359.98 -9.52 -42.60 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -4.85 Total: -2.38 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: 0.16 Total: -5.31 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: -0.06 Total: -53.19 kcal Atomic # 8 Polarization: -40.76 SS G_CDS: -2.63 Total: -43.39 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.50 Total: 15.64 kcal Atomic # 16 Polarization: 43.67 SS G_CDS: -3.06 Total: 40.60 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.08 -9.52 -42.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069737610.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.059 kcal (2) G-P(sol) polarization free energy of solvation -33.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.52 seconds