Wall clock time and date at job start Tue Mar 31 2020 06:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21281 * 119.99937 * 2 1 4 4 N 1.34774 * 120.00225 * 180.02562 * 2 1 3 5 5 C 1.46494 * 120.00491 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.47537 * 179.97438 * 5 4 2 7 7 C 1.52996 * 109.46950 * 179.97438 * 6 5 4 8 8 C 1.53005 * 109.46836 * 180.02562 * 7 6 5 9 9 C 1.53003 * 109.47081 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47173 * 179.97438 * 9 8 7 11 11 O 1.21291 * 119.99463 * 0.02562 * 10 9 8 12 12 N 1.34768 * 119.99884 * 180.02562 * 10 9 8 13 13 C 1.46502 * 119.99629 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.47004 * 269.99649 * 13 12 10 15 15 H 1.08001 * 120.00366 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00221 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99726 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00272 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46956 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47208 * 119.99993 * 18 16 14 21 21 H 1.48501 * 109.47470 * 240.00245 * 18 16 14 22 22 C 1.39926 * 120.00394 * 359.97438 * 12 10 9 23 23 C 1.38896 * 120.07192 * 270.00291 * 22 12 10 24 24 C 1.38089 * 119.92836 * 179.97438 * 23 22 12 25 25 C 1.38301 * 120.07154 * 0.26163 * 24 23 22 26 26 C 1.38265 * 120.14089 * 359.48342 * 25 24 23 27 27 C 1.50696 * 119.96735 * 180.25880 * 26 25 24 28 28 C 1.38136 * 120.06884 * 0.50983 * 26 25 24 29 29 C 1.50705 * 120.03559 * 179.76571 * 28 26 25 30 30 H 1.09000 * 109.47173 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47044 * 300.00086 * 1 2 3 32 32 H 1.08999 * 109.47309 * 59.99720 * 1 2 3 33 33 H 0.97009 * 119.99658 * 359.97438 * 4 2 1 34 34 H 1.09003 * 109.47018 * 59.99797 * 5 4 2 35 35 H 1.09007 * 109.46955 * 300.00215 * 5 4 2 36 36 H 1.09003 * 109.46557 * 59.99689 * 6 5 4 37 37 H 1.08997 * 109.46842 * 300.00407 * 6 5 4 38 38 H 1.08994 * 109.47159 * 60.00276 * 7 6 5 39 39 H 1.09006 * 109.46953 * 299.99712 * 7 6 5 40 40 H 1.08994 * 109.47466 * 59.99919 * 8 7 6 41 41 H 1.09006 * 109.46669 * 299.99341 * 8 7 6 42 42 H 1.09003 * 109.47179 * 59.99489 * 9 8 7 43 43 H 1.08997 * 109.47136 * 299.99748 * 9 8 7 44 44 H 1.08995 * 109.47722 * 29.99678 * 13 12 10 45 45 H 1.08999 * 109.47185 * 149.99795 * 13 12 10 46 46 H 0.97001 * 119.99558 * 180.02562 * 17 16 14 47 47 H 1.07999 * 120.03506 * 359.95652 * 23 22 12 48 48 H 1.08002 * 119.96096 * 179.97438 * 24 23 22 49 49 H 1.07991 * 119.93139 * 179.74706 * 25 24 23 50 50 H 1.08998 * 109.47556 * 270.25514 * 27 26 25 51 51 H 1.09005 * 109.47311 * 30.25507 * 27 26 25 52 52 H 1.09000 * 109.47542 * 150.25006 * 27 26 25 53 53 H 1.09001 * 109.47268 * 269.98345 * 29 28 26 54 54 H 1.09003 * 109.46927 * 29.98305 * 29 28 26 55 55 H 1.09002 * 109.46956 * 149.98548 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 6 4.1559 -2.6097 -0.0010 7 6 5.6859 -2.6096 -0.0022 8 6 6.1959 -4.0522 -0.0027 9 6 7.7259 -4.0522 -0.0046 10 6 8.2283 -5.4730 -0.0045 11 8 7.4401 -6.3948 -0.0035 12 7 9.5533 -5.7192 -0.0055 13 6 10.0416 -7.1004 -0.0059 14 6 10.2102 -7.5741 1.4147 15 1 9.9773 -6.9123 2.2359 16 6 10.6627 -8.8519 1.6663 17 7 10.9477 -9.6573 0.6665 18 14 10.8723 -9.4388 3.4273 19 1 10.4873 -8.3501 4.3610 20 1 10.0047 -10.6211 3.6616 21 1 12.2908 -9.8120 3.6593 22 6 10.4626 -4.6557 -0.0071 23 6 10.9138 -4.1276 -1.2100 24 6 11.8107 -3.0777 -1.2082 25 6 12.2640 -2.5555 -0.0104 26 6 11.8128 -3.0755 1.1887 27 6 12.3048 -2.4997 2.4915 28 6 10.9154 -4.1256 1.1937 29 6 10.4282 -4.6952 2.5011 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.6959 -2.0073 -0.0005 34 1 4.0096 -0.6536 0.8889 35 1 4.0089 -0.6531 -0.8911 36 1 3.7922 -3.1237 -0.8907 37 1 3.7929 -3.1233 0.8892 38 1 6.0499 -2.0955 0.8873 39 1 6.0485 -2.0961 -0.8928 40 1 5.8319 -4.5660 -0.8924 41 1 5.8333 -4.5660 0.8876 42 1 8.0904 -3.5382 0.8849 43 1 8.0882 -3.5385 -0.8951 44 1 9.3233 -7.7397 -0.5192 45 1 11.0014 -7.1463 -0.5205 46 1 11.2657 -10.5564 0.8435 47 1 10.5637 -4.5379 -2.1456 48 1 12.1622 -2.6670 -2.1431 49 1 12.9686 -1.7371 -0.0117 50 1 13.2047 -3.0283 2.8056 51 1 12.5326 -1.4420 2.3583 52 1 11.5330 -2.6119 3.2529 53 1 11.0918 -5.5004 2.8165 54 1 10.4218 -3.9117 3.2589 55 1 9.4185 -5.0856 2.3735 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069807910.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:11 Heat of formation + Delta-G solvation = -94.864202 kcal Electronic energy + Delta-G solvation = -32265.647439 eV Core-core repulsion = 28072.575330 eV Total energy + Delta-G solvation = -4193.072108 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 360.220 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.57409 -40.58452 -39.80898 -37.40221 -36.63558 -35.33927 -34.82615 -34.19426 -32.51678 -31.73195 -30.59120 -29.59654 -28.15092 -27.33569 -26.90259 -24.93777 -23.67929 -22.74476 -22.18335 -21.70790 -21.31893 -19.97917 -18.71705 -18.11022 -17.71186 -17.38022 -17.21816 -16.99984 -16.88371 -16.58586 -16.28357 -16.13151 -15.58298 -15.13490 -14.94576 -14.70149 -14.60906 -14.40466 -14.21591 -13.98351 -13.82924 -13.62655 -13.53011 -13.41767 -13.33932 -13.30548 -13.04108 -12.94659 -12.85966 -12.73843 -12.72125 -12.63448 -12.15822 -12.10994 -12.02686 -12.00858 -11.94504 -11.87740 -11.45072 -11.43128 -10.98642 -10.78915 -10.64714 -10.11657 -9.63119 -9.43732 -9.39323 -8.21862 -6.33458 0.38653 0.49903 1.34042 1.36139 1.47471 1.63862 1.74219 2.22012 2.33280 2.42448 2.80658 3.09038 3.59862 3.86435 3.92185 3.96105 3.98443 4.04115 4.09568 4.19347 4.21826 4.32807 4.45922 4.46064 4.51290 4.57816 4.60978 4.68002 4.71042 4.73355 4.75403 4.83051 4.85836 4.94127 4.95191 4.97200 5.01218 5.03311 5.05786 5.08929 5.16061 5.22046 5.24193 5.38110 5.44287 5.46661 5.48996 5.53984 5.61757 5.64288 5.80374 5.82835 6.07124 6.13268 6.58334 6.73488 6.80392 7.26356 7.29073 7.44676 8.87048 Molecular weight = 360.22amu Principal moments of inertia in cm(-1) A = 0.009159 B = 0.002228 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3056.520907 B =12564.643915 C =14218.004747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.499 3.501 3 O -0.606 6.606 4 N -0.721 5.721 5 C 0.119 3.881 6 C -0.121 4.121 7 C -0.107 4.107 8 C -0.095 4.095 9 C -0.123 4.123 10 C 0.503 3.497 11 O -0.586 6.586 12 N -0.562 5.562 13 C 0.266 3.734 14 C -0.535 4.535 15 H 0.079 0.921 16 C 0.003 3.997 17 N -0.933 5.933 18 Si 0.962 3.038 19 H -0.260 1.260 20 H -0.283 1.283 21 H -0.274 1.274 22 C 0.121 3.879 23 C -0.137 4.137 24 C -0.109 4.109 25 C -0.113 4.113 26 C -0.085 4.085 27 C -0.114 4.114 28 C -0.089 4.089 29 C -0.107 4.107 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.417 0.583 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.098 0.902 43 H 0.104 0.896 44 H 0.000 1.000 45 H 0.009 0.991 46 H 0.264 0.736 47 H 0.117 0.883 48 H 0.153 0.847 49 H 0.156 0.844 50 H 0.072 0.928 51 H 0.089 0.911 52 H 0.071 0.929 53 H 0.059 0.941 54 H 0.090 0.910 55 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.463 21.207 -0.360 23.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.288 3.712 3 O -0.489 6.489 4 N -0.374 5.374 5 C -0.005 4.005 6 C -0.158 4.158 7 C -0.145 4.145 8 C -0.133 4.133 9 C -0.162 4.162 10 C 0.294 3.706 11 O -0.466 6.466 12 N -0.290 5.290 13 C 0.146 3.854 14 C -0.573 4.573 15 H 0.097 0.903 16 C -0.195 4.195 17 N -0.573 5.573 18 Si 0.786 3.214 19 H -0.183 1.183 20 H -0.209 1.209 21 H -0.199 1.199 22 C 0.031 3.969 23 C -0.156 4.156 24 C -0.127 4.127 25 C -0.131 4.131 26 C -0.086 4.086 27 C -0.170 4.170 28 C -0.090 4.090 29 C -0.163 4.163 30 H 0.123 0.877 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.254 0.746 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.117 0.883 43 H 0.122 0.878 44 H 0.019 0.981 45 H 0.027 0.973 46 H 0.073 0.927 47 H 0.135 0.865 48 H 0.171 0.829 49 H 0.174 0.826 50 H 0.091 0.909 51 H 0.108 0.892 52 H 0.090 0.910 53 H 0.078 0.922 54 H 0.108 0.892 55 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.393 21.243 -0.401 23.231 hybrid contribution 0.144 -1.915 0.399 1.961 sum -9.249 19.328 -0.002 21.427 Atomic orbital electron populations 1.21874 0.88221 1.06354 1.05863 1.21645 0.92401 0.82868 0.74241 1.90704 1.72253 1.33404 1.52492 1.46168 1.07536 1.09323 1.74342 1.21315 0.79978 0.97643 1.01585 1.21688 0.95801 0.94738 1.03622 1.21425 0.94713 0.94990 1.03350 1.21258 0.92143 0.97592 1.02315 1.21657 0.98193 0.91210 1.05164 1.21484 0.81288 0.92813 0.75046 1.90630 1.55507 1.48691 1.51821 1.45686 1.05115 1.06556 1.71619 1.18773 0.92564 0.77174 0.96858 1.22044 1.43239 0.98906 0.93159 0.90341 1.25879 0.95244 0.96746 1.01648 1.70086 1.46323 1.07982 1.32940 0.85445 0.77886 0.78413 0.79635 1.18343 1.20942 1.19938 1.17762 0.95207 0.90110 0.93836 1.21438 0.99541 0.98189 0.96476 1.21258 0.96322 0.95451 0.99709 1.21388 0.99965 1.00760 0.90983 1.19988 0.96061 0.95051 0.97490 1.20892 1.01487 1.01620 0.92985 1.20107 0.97959 0.96453 0.94476 1.20868 1.00344 1.00528 0.94548 0.87679 0.88148 0.88104 0.74583 0.92447 0.92322 0.90482 0.90659 0.90904 0.90648 0.92388 0.92764 0.88328 0.87762 0.98148 0.97336 0.92720 0.86509 0.82907 0.82628 0.90942 0.89185 0.90980 0.92195 0.89179 0.93964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 10.39 71.24 0.74 -0.51 16 2 C 0.50 8.67 7.94 87.66 0.70 9.37 16 3 O -0.61 -17.08 17.10 -3.03 -0.05 -17.13 16 4 N -0.72 -9.71 5.56 -463.06 -2.57 -12.28 16 5 C 0.12 1.91 5.67 86.38 0.49 2.40 16 6 C -0.12 -1.75 5.33 30.59 0.16 -1.58 16 7 C -0.11 -1.86 5.21 30.59 0.16 -1.70 16 8 C -0.09 -2.43 4.50 30.60 0.14 -2.30 16 9 C -0.12 -3.63 4.51 29.85 0.13 -3.49 16 10 C 0.50 21.54 6.98 87.66 0.61 22.15 16 11 O -0.59 -30.43 15.56 -3.06 -0.05 -30.47 16 12 N -0.56 -25.11 1.66 -635.32 -1.06 -26.16 16 13 C 0.27 14.86 5.15 85.63 0.44 15.30 16 14 C -0.54 -30.66 8.75 25.60 0.22 -30.44 16 15 H 0.08 4.30 4.33 -2.91 -0.01 4.29 16 16 C 0.00 0.17 5.46 84.66 0.46 0.63 16 17 N -0.93 -57.45 13.29 21.45 0.28 -57.17 16 18 Si 0.96 45.10 29.54 68.60 2.03 47.13 16 19 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 20 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 21 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 22 C 0.12 4.42 3.90 38.15 0.15 4.57 16 23 C -0.14 -4.20 9.97 22.39 0.22 -3.98 16 24 C -0.11 -2.51 10.04 22.25 0.22 -2.28 16 25 C -0.11 -2.40 9.70 22.29 0.22 -2.18 16 26 C -0.09 -2.14 5.88 -19.88 -0.12 -2.25 16 27 C -0.11 -2.09 9.60 71.23 0.68 -1.40 16 28 C -0.09 -2.90 5.90 -19.74 -0.12 -3.02 16 29 C -0.11 -3.65 7.71 71.24 0.55 -3.10 16 30 H 0.10 0.19 7.91 -2.39 -0.02 0.17 16 31 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.42 2.99 8.31 -92.70 -0.77 2.22 16 34 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 40 H 0.06 1.61 8.10 -2.39 -0.02 1.59 16 41 H 0.05 1.56 8.10 -2.38 -0.02 1.54 16 42 H 0.10 2.70 8.10 -2.39 -0.02 2.68 16 43 H 0.10 2.69 8.10 -2.39 -0.02 2.67 16 44 H 0.00 0.03 7.42 -2.39 -0.02 0.01 16 45 H 0.01 0.51 8.05 -2.39 -0.02 0.49 16 46 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 47 H 0.12 3.56 8.06 -2.91 -0.02 3.53 16 48 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 49 H 0.16 2.17 8.06 -2.92 -0.02 2.14 16 50 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 51 H 0.09 1.17 8.09 -2.38 -0.02 1.15 16 52 H 0.07 1.30 5.94 -2.39 -0.01 1.28 16 53 H 0.06 2.35 7.04 -2.39 -0.02 2.33 16 54 H 0.09 2.36 5.95 -2.39 -0.01 2.35 16 55 H 0.04 1.65 6.04 -2.39 -0.01 1.64 16 Total: -1.00 -83.46 443.84 4.76 -78.69 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: 0.11 Total: 21.22 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: 6.07 Total: -3.83 kcal Atomic # 7 Polarization: -92.27 SS G_CDS: -3.34 Total: -95.61 kcal Atomic # 8 Polarization: -47.50 SS G_CDS: -0.10 Total: -47.60 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -83.46 4.76 -78.69 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069807910.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.173 kcal (2) G-P(sol) polarization free energy of solvation -83.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds