Wall clock time and date at job start Tue Mar 31 2020 05:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.46762 * 2 1 4 4 C 1.38125 * 125.86735 * 94.21337 * 3 2 1 5 5 C 1.47963 * 125.73509 * 0.04196 * 4 3 2 6 6 C 1.39939 * 120.92318 * 340.54335 * 5 4 3 7 7 C 1.37938 * 119.00173 * 179.73226 * 6 5 4 8 8 N 1.31948 * 120.90000 * 0.55754 * 7 6 5 9 9 C 1.31938 * 122.04315 * 359.71490 * 8 7 6 10 10 C 1.37952 * 120.89634 * 0.02562 * 9 8 7 11 11 N 1.30352 * 108.53248 * 180.02562 * 4 3 2 12 12 N 1.40153 * 108.04258 * 0.02562 * 11 4 3 13 13 C 1.46503 * 126.24325 * 180.02562 * 12 11 4 14 14 N 1.46892 * 109.47087 * 90.02441 * 13 12 11 15 15 C 1.46903 * 111.00252 * 190.00306 * 14 13 12 16 16 C 1.50693 * 109.47574 * 161.30010 * 15 14 13 17 17 H 1.08000 * 119.99895 * 354.31685 * 16 15 14 18 18 C 1.37884 * 120.00157 * 174.32390 * 16 15 14 19 19 N 1.31509 * 119.99724 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99869 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47372 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.46877 * 119.99978 * 20 18 16 23 23 H 1.48503 * 109.46997 * 239.99669 * 20 18 16 24 24 C 1.46902 * 111.00128 * 66.04707 * 14 13 12 25 25 C 1.53001 * 117.49883 * 263.02762 * 24 14 13 26 26 C 1.53004 * 117.49808 * 194.40390 * 24 14 13 27 27 C 1.34798 * 125.86224 * 274.54165 * 3 2 1 28 28 S 1.71193 * 126.18425 * 359.97438 * 27 3 2 29 29 H 1.09007 * 109.46662 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47015 * 299.99690 * 1 2 3 31 31 H 1.08999 * 109.47451 * 60.00374 * 1 2 3 32 32 H 1.09004 * 109.47111 * 239.99826 * 2 1 3 33 33 H 1.08999 * 109.47451 * 119.99626 * 2 1 3 34 34 H 1.08000 * 120.49481 * 359.97438 * 6 5 4 35 35 H 1.07993 * 119.55268 * 180.29544 * 7 6 5 36 36 H 1.07998 * 119.55464 * 180.02562 * 9 8 7 37 37 H 1.07998 * 120.49469 * 179.97438 * 10 9 8 38 38 H 1.08994 * 109.46781 * 210.02420 * 13 12 11 39 39 H 1.09003 * 109.46619 * 330.02206 * 13 12 11 40 40 H 1.08998 * 109.46675 * 281.30098 * 15 14 13 41 41 H 1.09007 * 109.46721 * 41.29615 * 15 14 13 42 42 H 0.97002 * 119.99994 * 179.97438 * 19 18 16 43 43 H 1.08998 * 115.55244 * 48.73992 * 24 14 13 44 44 H 1.09002 * 117.49963 * 0.02562 * 25 24 14 45 45 H 1.09004 * 117.49798 * 145.02141 * 25 24 14 46 46 H 1.08995 * 117.50079 * 214.97999 * 26 24 14 47 47 H 1.09005 * 117.50094 * 0.02562 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3655 2.1169 1.1163 5 6 2.3079 1.6419 2.5164 6 6 1.5217 0.5397 2.8702 7 6 1.5016 0.1273 4.1863 8 7 2.2015 0.7634 5.1065 9 6 2.9510 1.8098 4.8168 10 6 3.0333 2.2864 3.5248 11 7 2.7528 3.2998 0.7290 12 7 2.6605 3.3507 -0.6686 13 6 2.9986 4.4957 -1.5177 14 7 4.4134 4.4175 -1.9047 15 6 4.8510 5.6601 -2.5546 16 6 6.3554 5.7410 -2.5228 17 1 6.9250 4.9965 -1.9863 18 6 7.0048 6.7654 -3.1785 19 7 6.3113 7.6717 -3.8321 20 14 8.8697 6.8660 -3.1384 21 1 9.4094 5.7354 -2.3412 22 1 9.3992 6.7926 -4.5239 23 1 9.2829 8.1503 -2.5180 24 6 4.6592 3.2561 -2.7700 25 6 5.1920 1.9830 -2.1094 26 6 6.1131 2.8323 -2.9877 27 6 2.1999 2.1547 -1.0890 28 16 1.9030 1.6999 -2.7125 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.9424 0.0174 2.1232 35 1 0.9017 -0.7252 4.4683 36 1 3.5078 2.3000 5.6017 37 1 3.6485 3.1437 3.2950 38 1 2.3759 4.4810 -2.4122 39 1 2.8228 5.4203 -0.9678 40 1 4.5084 5.6690 -3.5893 41 1 4.4299 6.5148 -2.0251 42 1 6.7681 8.3926 -4.2931 43 1 3.9702 3.1389 -3.6065 44 1 5.3598 2.0071 -1.0326 45 1 4.8535 1.0280 -2.5111 46 1 6.3806 2.4359 -3.9672 47 1 6.8874 3.4150 -2.4885 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069921370.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:04 Heat of formation + Delta-G solvation = 185.744658 kcal Electronic energy + Delta-G solvation = -30176.266963 eV Core-core repulsion = 26296.461063 eV Total energy + Delta-G solvation = -3879.805900 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 359.148 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.83708 -40.49103 -37.95108 -36.24914 -34.38668 -33.71257 -32.77180 -31.81929 -31.25220 -30.85845 -27.65613 -25.75077 -25.17771 -24.16458 -23.53970 -22.60060 -22.36549 -21.57651 -21.44731 -19.68193 -18.42078 -17.30085 -17.18713 -16.76637 -16.67517 -16.62189 -15.98705 -15.53721 -14.96692 -14.77101 -14.62212 -14.47315 -14.37292 -14.21243 -13.89387 -13.77715 -13.26290 -12.77818 -12.40200 -12.35493 -12.23567 -12.06857 -11.77223 -11.56442 -11.54155 -11.30821 -11.21803 -10.92061 -10.84235 -10.80877 -10.56089 -10.08250 -10.05080 -9.85982 -9.72910 -9.57748 -9.23997 -9.20899 -8.46055 -7.75512 -7.53663 -7.19531 -6.07381 -4.07586 0.09615 0.56958 1.14131 1.34147 1.80234 2.18118 2.38832 3.27703 3.28446 3.36355 3.40208 3.65524 3.89398 3.93220 4.19605 4.32998 4.34977 4.46845 4.51044 4.55786 4.62192 4.67751 4.80875 4.94812 4.97394 5.12474 5.23665 5.27957 5.28890 5.37561 5.48074 5.54071 5.64371 5.75172 5.78373 5.83860 5.94969 6.05589 6.09466 6.28208 6.37096 6.46696 6.71059 6.97224 7.03431 7.06767 7.27995 7.39760 7.71713 7.92639 8.02985 8.37010 8.97556 9.55198 11.03269 Molecular weight = 359.15amu Principal moments of inertia in cm(-1) A = 0.012185 B = 0.003075 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.388848 B = 9102.663534 C =10502.956937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.102 3.898 3 N -0.490 5.490 4 C 0.286 3.714 5 C 0.022 3.978 6 C -0.166 4.166 7 C 0.106 3.894 8 N -0.473 5.473 9 C 0.108 3.892 10 C -0.124 4.124 11 N -0.235 5.235 12 N -0.345 5.345 13 C 0.305 3.695 14 N -0.522 5.522 15 C 0.203 3.797 16 C -0.499 4.499 17 H 0.069 0.931 18 C 0.056 3.944 19 N -0.898 5.898 20 Si 0.896 3.104 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.285 1.285 24 C 0.030 3.970 25 C -0.182 4.182 26 C -0.152 4.152 27 C 0.475 3.525 28 S -0.582 6.582 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.115 0.885 33 H 0.102 0.898 34 H 0.151 0.849 35 H 0.165 0.835 36 H 0.168 0.832 37 H 0.152 0.848 38 H 0.088 0.912 39 H 0.112 0.888 40 H 0.009 0.991 41 H 0.028 0.972 42 H 0.261 0.739 43 H 0.098 0.902 44 H 0.072 0.928 45 H 0.084 0.916 46 H 0.082 0.918 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.025 -16.152 15.571 25.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.019 4.019 3 N -0.191 5.191 4 C 0.009 3.991 5 C 0.011 3.989 6 C -0.187 4.187 7 C -0.051 4.051 8 N -0.183 5.183 9 C -0.048 4.048 10 C -0.146 4.146 11 N -0.056 5.056 12 N -0.138 5.138 13 C 0.095 3.905 14 N -0.248 5.248 15 C 0.079 3.921 16 C -0.537 4.537 17 H 0.087 0.913 18 C -0.145 4.145 19 N -0.537 5.537 20 Si 0.724 3.276 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.211 1.211 24 C -0.079 4.079 25 C -0.220 4.220 26 C -0.190 4.190 27 C 0.115 3.885 28 S -0.454 6.454 29 H 0.104 0.896 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.134 0.866 33 H 0.120 0.880 34 H 0.168 0.832 35 H 0.182 0.818 36 H 0.185 0.815 37 H 0.170 0.830 38 H 0.106 0.894 39 H 0.130 0.870 40 H 0.027 0.973 41 H 0.046 0.954 42 H 0.071 0.929 43 H 0.115 0.885 44 H 0.091 0.909 45 H 0.102 0.898 46 H 0.100 0.900 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.544 -15.530 15.956 25.080 hybrid contribution 0.574 0.234 -1.099 1.262 sum -10.969 -15.296 14.857 23.980 Atomic orbital electron populations 1.22256 0.93281 1.04036 1.03872 1.22227 0.96310 0.77228 1.06151 1.46291 1.54343 1.14760 1.03721 1.22295 0.99069 0.88328 0.89411 1.17758 0.98294 0.96069 0.86824 1.22672 0.99849 0.96846 0.99373 1.22748 0.95825 0.98396 0.88081 1.67694 1.05799 1.07413 1.37353 1.22851 0.94867 0.92086 0.95045 1.22361 0.98623 1.00626 0.92980 1.77557 1.19270 1.15949 0.92863 1.49760 1.49408 1.12355 1.02243 1.22431 0.93116 0.83127 0.91777 1.61848 1.12884 1.06118 1.43948 1.19712 0.96819 0.82916 0.92609 1.21156 0.90507 1.10399 1.31656 0.91321 1.24954 0.98492 0.95684 0.95370 1.69951 1.35386 1.14313 1.34070 0.86462 0.85437 0.77944 0.77727 1.19691 1.21039 1.21079 1.22354 0.97926 0.90423 0.97224 1.22917 1.06226 0.94856 0.97970 1.23110 0.94409 1.01502 0.99932 1.23764 0.87403 0.83702 0.93678 1.93290 1.73175 1.83316 0.95571 0.89571 0.92020 0.90142 0.86647 0.87977 0.83165 0.81764 0.81509 0.83006 0.89402 0.87033 0.97292 0.95395 0.92911 0.88496 0.90918 0.89803 0.89979 0.86861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.14 9.54 37.16 0.35 -0.79 16 2 C 0.10 0.82 5.67 -4.04 -0.02 0.80 16 3 N -0.49 -5.89 2.76 -115.17 -0.32 -6.21 16 4 C 0.29 3.45 7.68 -153.94 -1.18 2.26 16 5 C 0.02 0.20 5.88 -104.64 -0.61 -0.42 16 6 C -0.17 -1.08 8.59 -39.05 -0.34 -1.42 16 7 C 0.11 0.66 11.17 -17.61 -0.20 0.46 16 8 N -0.47 -3.84 10.35 -13.35 -0.14 -3.98 16 9 C 0.11 0.79 11.17 -17.61 -0.20 0.60 16 10 C -0.12 -1.05 9.79 -39.05 -0.38 -1.43 16 11 N -0.24 -3.51 12.39 32.58 0.40 -3.11 16 12 N -0.35 -5.69 3.58 -65.02 -0.23 -5.93 16 13 C 0.30 5.51 5.97 -63.32 -0.38 5.14 16 14 N -0.52 -11.01 4.71 -231.97 -1.09 -12.11 16 15 C 0.20 5.03 4.76 -4.98 -0.02 5.00 16 16 C -0.50 -13.37 7.88 -34.44 -0.27 -13.64 16 17 H 0.07 1.85 5.61 -52.49 -0.29 1.56 16 18 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 19 N -0.90 -25.90 13.29 55.43 0.74 -25.16 16 20 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 C 0.03 0.61 3.18 -67.71 -0.22 0.39 16 25 C -0.18 -3.41 8.83 -26.73 -0.24 -3.65 16 26 C -0.15 -3.10 9.42 -26.73 -0.25 -3.35 16 27 C 0.47 7.41 6.40 -86.80 -0.56 6.86 16 28 S -0.58 -10.40 26.92 -107.50 -2.89 -13.30 16 29 H 0.09 0.34 8.14 -51.92 -0.42 -0.08 16 30 H 0.06 0.36 6.99 -51.93 -0.36 0.00 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.12 1.04 7.78 -51.93 -0.40 0.64 16 33 H 0.10 0.56 5.60 -51.93 -0.29 0.27 16 34 H 0.15 0.70 3.34 -52.49 -0.18 0.52 16 35 H 0.17 0.52 8.06 -52.49 -0.42 0.10 16 36 H 0.17 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.15 1.29 8.02 -52.49 -0.42 0.87 16 38 H 0.09 1.61 7.64 -51.93 -0.40 1.21 16 39 H 0.11 1.89 7.84 -51.93 -0.41 1.49 16 40 H 0.01 0.25 8.01 -51.93 -0.42 -0.17 16 41 H 0.03 0.71 7.75 -51.92 -0.40 0.31 16 42 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.10 2.12 7.09 -51.93 -0.37 1.75 16 44 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 45 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 46 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 47 H 0.11 2.53 5.45 -51.93 -0.28 2.25 16 LS Contribution 392.49 15.07 5.91 5.91 Total: -1.00 -32.94 392.49 -13.56 -46.50 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -6.32 Total: 2.82 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -4.61 Total: -1.73 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: -0.64 Total: -56.49 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -10.40 SS G_CDS: -2.89 Total: -13.30 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.94 -13.56 -46.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069921370.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 232.248 kcal (2) G-P(sol) polarization free energy of solvation -32.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 199.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 185.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds