Wall clock time and date at job start Tue Mar 31 2020 05:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.46762 * 2 1 4 4 C 1.38125 * 125.86735 * 94.21337 * 3 2 1 5 5 C 1.47963 * 125.73509 * 0.04196 * 4 3 2 6 6 C 1.39939 * 120.92318 * 340.54335 * 5 4 3 7 7 C 1.37938 * 119.00173 * 179.73226 * 6 5 4 8 8 N 1.31948 * 120.90000 * 0.55754 * 7 6 5 9 9 C 1.31938 * 122.04315 * 359.71490 * 8 7 6 10 10 C 1.37952 * 120.89634 * 0.02562 * 9 8 7 11 11 N 1.30352 * 108.53248 * 180.02562 * 4 3 2 12 12 N 1.40153 * 108.04258 * 0.02562 * 11 4 3 13 13 C 1.46503 * 126.24325 * 180.02562 * 12 11 4 14 14 N 1.46892 * 109.47087 * 90.02441 * 13 12 11 15 15 C 1.46903 * 111.00252 * 190.00306 * 14 13 12 16 16 C 1.50693 * 109.47574 * 161.30010 * 15 14 13 17 17 H 1.08000 * 119.99895 * 354.31685 * 16 15 14 18 18 C 1.37884 * 120.00157 * 174.32390 * 16 15 14 19 19 N 1.31509 * 119.99724 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99869 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47372 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.46877 * 119.99978 * 20 18 16 23 23 H 1.48503 * 109.46997 * 239.99669 * 20 18 16 24 24 C 1.46902 * 111.00128 * 66.04707 * 14 13 12 25 25 C 1.53001 * 117.49883 * 263.02762 * 24 14 13 26 26 C 1.53004 * 117.49808 * 194.40390 * 24 14 13 27 27 C 1.34798 * 125.86224 * 274.54165 * 3 2 1 28 28 S 1.71193 * 126.18425 * 359.97438 * 27 3 2 29 29 H 1.09007 * 109.46662 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47015 * 299.99690 * 1 2 3 31 31 H 1.08999 * 109.47451 * 60.00374 * 1 2 3 32 32 H 1.09004 * 109.47111 * 239.99826 * 2 1 3 33 33 H 1.08999 * 109.47451 * 119.99626 * 2 1 3 34 34 H 1.08000 * 120.49481 * 359.97438 * 6 5 4 35 35 H 1.07993 * 119.55268 * 180.29544 * 7 6 5 36 36 H 1.07998 * 119.55464 * 180.02562 * 9 8 7 37 37 H 1.07998 * 120.49469 * 179.97438 * 10 9 8 38 38 H 1.08994 * 109.46781 * 210.02420 * 13 12 11 39 39 H 1.09003 * 109.46619 * 330.02206 * 13 12 11 40 40 H 1.08998 * 109.46675 * 281.30098 * 15 14 13 41 41 H 1.09007 * 109.46721 * 41.29615 * 15 14 13 42 42 H 0.97002 * 119.99994 * 179.97438 * 19 18 16 43 43 H 1.08998 * 115.55244 * 48.73992 * 24 14 13 44 44 H 1.09002 * 117.49963 * 0.02562 * 25 24 14 45 45 H 1.09004 * 117.49798 * 145.02141 * 25 24 14 46 46 H 1.08995 * 117.50079 * 214.97999 * 26 24 14 47 47 H 1.09005 * 117.50094 * 0.02562 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3655 2.1169 1.1163 5 6 2.3079 1.6419 2.5164 6 6 1.5217 0.5397 2.8702 7 6 1.5016 0.1273 4.1863 8 7 2.2015 0.7634 5.1065 9 6 2.9510 1.8098 4.8168 10 6 3.0333 2.2864 3.5248 11 7 2.7528 3.2998 0.7290 12 7 2.6605 3.3507 -0.6686 13 6 2.9986 4.4957 -1.5177 14 7 4.4134 4.4175 -1.9047 15 6 4.8510 5.6601 -2.5546 16 6 6.3554 5.7410 -2.5228 17 1 6.9250 4.9965 -1.9863 18 6 7.0048 6.7654 -3.1785 19 7 6.3113 7.6717 -3.8321 20 14 8.8697 6.8660 -3.1384 21 1 9.4094 5.7354 -2.3412 22 1 9.3992 6.7926 -4.5239 23 1 9.2829 8.1503 -2.5180 24 6 4.6592 3.2561 -2.7700 25 6 5.1920 1.9830 -2.1094 26 6 6.1131 2.8323 -2.9877 27 6 2.1999 2.1547 -1.0890 28 16 1.9030 1.6999 -2.7125 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.9424 0.0174 2.1232 35 1 0.9017 -0.7252 4.4683 36 1 3.5078 2.3000 5.6017 37 1 3.6485 3.1437 3.2950 38 1 2.3759 4.4810 -2.4122 39 1 2.8228 5.4203 -0.9678 40 1 4.5084 5.6690 -3.5893 41 1 4.4299 6.5148 -2.0251 42 1 6.7681 8.3926 -4.2931 43 1 3.9702 3.1389 -3.6065 44 1 5.3598 2.0071 -1.0326 45 1 4.8535 1.0280 -2.5111 46 1 6.3806 2.4359 -3.9672 47 1 6.8874 3.4150 -2.4885 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069921370.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:03 Heat of formation + Delta-G solvation = 167.371651 kcal Electronic energy + Delta-G solvation = -30177.063676 eV Core-core repulsion = 26296.461063 eV Total energy + Delta-G solvation = -3880.602613 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 359.148 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.94334 -41.10292 -39.54432 -37.31871 -35.56543 -35.18349 -34.39760 -32.70916 -32.24300 -31.69376 -29.38229 -27.21782 -25.99087 -24.93514 -24.40917 -24.29068 -23.69058 -23.13635 -22.39405 -21.32865 -19.53629 -18.64207 -18.13777 -17.94068 -17.88004 -17.25993 -17.02517 -16.91176 -16.57738 -16.33809 -16.02257 -15.54337 -15.28325 -14.99668 -14.98334 -14.36145 -14.32425 -14.22447 -13.94489 -13.69649 -13.37819 -13.28405 -12.96011 -12.84154 -12.75635 -12.64711 -12.54033 -12.49596 -12.42653 -12.19710 -11.92327 -11.66634 -11.34262 -11.20594 -10.86424 -10.74500 -10.64391 -10.55510 -10.25827 -9.45683 -8.91360 -8.64940 -8.18447 -6.25524 -0.65003 -0.10042 0.04434 0.14075 0.91267 1.00528 1.28130 1.40211 1.41883 1.53682 2.39416 2.64799 2.74996 2.92459 2.97840 3.06163 3.15713 3.42487 3.48032 3.73339 3.76603 3.89969 3.95044 4.01288 4.05794 4.12964 4.17034 4.19593 4.24466 4.39562 4.44949 4.55273 4.68925 4.74440 4.75981 4.78642 4.81859 4.89756 4.97502 5.02908 5.04023 5.22049 5.24840 5.29995 5.36590 5.54121 5.71170 5.91167 5.96439 6.20949 6.38312 6.85914 6.86503 7.41416 8.92342 Molecular weight = 359.15amu Principal moments of inertia in cm(-1) A = 0.012185 B = 0.003075 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.388848 B = 9102.663534 C =10502.956937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.090 3.910 3 N -0.478 5.478 4 C 0.309 3.691 5 C -0.001 4.001 6 C -0.150 4.150 7 C 0.111 3.889 8 N -0.489 5.489 9 C 0.108 3.892 10 C -0.131 4.131 11 N -0.269 5.269 12 N -0.355 5.355 13 C 0.312 3.688 14 N -0.523 5.523 15 C 0.219 3.781 16 C -0.505 4.505 17 H 0.067 0.933 18 C 0.006 3.994 19 N -0.933 5.933 20 Si 0.961 3.039 21 H -0.265 1.265 22 H -0.282 1.282 23 H -0.280 1.280 24 C 0.022 3.978 25 C -0.146 4.146 26 C -0.159 4.159 27 C 0.480 3.520 28 S -0.636 6.636 29 H 0.120 0.880 30 H 0.072 0.928 31 H 0.049 0.951 32 H 0.107 0.893 33 H 0.137 0.863 34 H 0.172 0.828 35 H 0.201 0.799 36 H 0.188 0.812 37 H 0.145 0.855 38 H 0.082 0.918 39 H 0.118 0.882 40 H -0.021 1.021 41 H 0.015 0.985 42 H 0.263 0.737 43 H 0.084 0.916 44 H 0.068 0.932 45 H 0.095 0.905 46 H 0.094 0.906 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.245 -18.786 18.304 28.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.028 4.028 3 N -0.177 5.177 4 C 0.032 3.968 5 C -0.012 4.012 6 C -0.172 4.172 7 C -0.045 4.045 8 N -0.198 5.198 9 C -0.048 4.048 10 C -0.153 4.153 11 N -0.090 5.090 12 N -0.146 5.146 13 C 0.102 3.898 14 N -0.249 5.249 15 C 0.094 3.906 16 C -0.543 4.543 17 H 0.085 0.915 18 C -0.192 4.192 19 N -0.573 5.573 20 Si 0.787 3.213 21 H -0.189 1.189 22 H -0.208 1.208 23 H -0.206 1.206 24 C -0.087 4.087 25 C -0.184 4.184 26 C -0.196 4.196 27 C 0.116 3.884 28 S -0.509 6.509 29 H 0.138 0.862 30 H 0.091 0.909 31 H 0.068 0.932 32 H 0.125 0.875 33 H 0.155 0.845 34 H 0.189 0.811 35 H 0.218 0.782 36 H 0.205 0.795 37 H 0.162 0.838 38 H 0.099 0.901 39 H 0.136 0.864 40 H -0.003 1.003 41 H 0.033 0.967 42 H 0.072 0.928 43 H 0.101 0.899 44 H 0.086 0.914 45 H 0.113 0.887 46 H 0.112 0.888 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.783 -18.212 18.740 28.665 hybrid contribution 0.529 0.932 -1.746 2.048 sum -11.253 -17.280 16.994 26.721 Atomic orbital electron populations 1.22247 0.91669 1.05941 1.02911 1.22718 0.97621 0.75030 1.07468 1.46601 1.52892 1.15634 1.02594 1.22880 0.96179 0.87241 0.90474 1.17890 1.00445 0.97818 0.85066 1.22876 0.98690 0.95435 1.00161 1.23354 0.95071 0.98692 0.87423 1.67774 1.06155 1.07680 1.38203 1.23153 0.94734 0.91934 0.94960 1.22390 0.98795 1.00616 0.93476 1.77594 1.22137 1.17895 0.91367 1.49440 1.49768 1.12181 1.03170 1.22207 0.91231 0.84313 0.92050 1.61761 1.14985 1.04837 1.43305 1.19336 0.96059 0.84266 0.90949 1.21402 0.91482 1.10178 1.31251 0.91488 1.25758 1.03002 0.95353 0.95046 1.70068 1.37226 1.15014 1.35031 0.85451 0.80001 0.78128 0.77766 1.18911 1.20761 1.20565 1.22270 0.97806 0.91166 0.97447 1.22732 1.04049 0.94334 0.97265 1.23076 0.93725 1.02039 1.00794 1.23452 0.87380 0.83824 0.93710 1.93351 1.75533 1.83971 0.98003 0.86205 0.90872 0.93154 0.87455 0.84498 0.81057 0.78247 0.79507 0.83752 0.90063 0.86392 1.00309 0.96694 0.92794 0.89886 0.91385 0.88666 0.88784 0.88727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.72 9.54 71.98 0.69 -1.03 16 2 C 0.09 1.22 5.67 86.38 0.49 1.71 16 3 N -0.48 -10.83 2.76 -518.30 -1.43 -12.26 16 4 C 0.31 7.01 7.68 136.32 1.05 8.06 16 5 C 0.00 -0.02 5.88 -19.88 -0.12 -0.13 16 6 C -0.15 -1.36 8.59 22.61 0.19 -1.17 16 7 C 0.11 0.89 11.17 84.60 0.95 1.84 16 8 N -0.49 -6.27 10.35 -196.16 -2.03 -8.30 16 9 C 0.11 1.32 11.17 84.61 0.95 2.27 16 10 C -0.13 -1.98 9.79 22.61 0.22 -1.76 16 11 N -0.27 -7.97 12.39 -50.82 -0.63 -8.60 16 12 N -0.35 -11.88 3.58 -359.61 -1.29 -13.17 16 13 C 0.31 11.78 5.97 170.81 1.02 12.80 16 14 N -0.52 -22.87 4.71 -887.82 -4.19 -27.06 16 15 C 0.22 11.33 4.76 85.55 0.41 11.73 16 16 C -0.50 -27.70 7.88 25.60 0.20 -27.49 16 17 H 0.07 3.66 5.61 -2.91 -0.02 3.64 16 18 C 0.01 0.36 5.46 84.66 0.46 0.82 16 19 N -0.93 -55.08 13.29 21.45 0.28 -54.80 16 20 Si 0.96 44.06 29.54 68.60 2.03 46.09 16 21 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 22 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 24 C 0.02 0.93 3.18 44.92 0.14 1.07 16 25 C -0.15 -5.44 8.83 30.60 0.27 -5.17 16 26 C -0.16 -6.53 9.42 30.60 0.29 -6.24 16 27 C 0.48 14.99 6.40 179.01 1.15 16.14 16 28 S -0.64 -23.27 26.92 -56.49 -1.52 -24.79 16 29 H 0.12 0.44 8.14 -2.38 -0.02 0.43 16 30 H 0.07 0.58 6.99 -2.39 -0.02 0.57 16 31 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.11 1.74 7.78 -2.39 -0.02 1.72 16 33 H 0.14 0.90 5.60 -2.39 -0.01 0.89 16 34 H 0.17 0.74 3.34 -2.91 -0.01 0.73 16 35 H 0.20 0.14 8.06 -2.91 -0.02 0.12 16 36 H 0.19 1.35 8.06 -2.91 -0.02 1.33 16 37 H 0.14 2.37 8.02 -2.91 -0.02 2.35 16 38 H 0.08 3.16 7.64 -2.39 -0.02 3.14 16 39 H 0.12 4.21 7.84 -2.39 -0.02 4.20 16 40 H -0.02 -1.20 8.01 -2.39 -0.02 -1.22 16 41 H 0.02 0.81 7.75 -2.38 -0.02 0.79 16 42 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 43 H 0.08 3.78 7.09 -2.39 -0.02 3.77 16 44 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 45 H 0.10 3.37 8.14 -2.38 -0.02 3.35 16 46 H 0.09 3.58 8.14 -2.39 -0.02 3.56 16 47 H 0.09 4.28 5.45 -2.38 -0.01 4.26 16 Total: -1.00 -73.91 392.49 0.58 -73.32 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 1.00 Total: 16.11 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 8.35 Total: 13.45 kcal Atomic # 7 Polarization: -114.91 SS G_CDS: -9.28 Total: -124.18 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: -23.27 SS G_CDS: -1.52 Total: -24.79 kcal Total: -73.91 0.58 -73.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069921370.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 240.696 kcal (2) G-P(sol) polarization free energy of solvation -73.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 166.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 167.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds