Wall clock time and date at job start Tue Mar 31 2020 05:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31448 * 1 3 3 Si 1.86802 * 120.00005 * 2 1 4 4 H 1.48498 * 109.46838 * 269.99576 * 3 2 1 5 5 H 1.48498 * 109.46979 * 29.99736 * 3 2 1 6 6 H 1.48504 * 109.47169 * 149.99695 * 3 2 1 7 7 C 1.38752 * 119.99658 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00547 * 0.02562 * 7 2 1 9 9 O 1.34926 * 119.99621 * 180.02562 * 7 2 1 10 10 C 1.34310 * 116.99838 * 179.97438 * 9 7 2 11 11 O 1.21212 * 120.00084 * 0.02562 * 10 9 7 12 12 C 1.50706 * 120.00077 * 180.02562 * 10 9 7 13 13 C 1.52999 * 109.46957 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.46626 * 180.02562 * 13 12 10 15 15 S 1.81399 * 109.47004 * 179.97438 * 14 13 12 16 16 O 1.42108 * 109.47094 * 289.05907 * 15 14 13 17 17 C 1.76192 * 103.00037 * 179.97438 * 15 14 13 18 18 C 1.38243 * 119.99108 * 269.72301 * 17 15 14 19 19 C 1.38220 * 120.01211 * 179.76751 * 18 17 15 20 20 C 1.38322 * 119.98733 * 0.51108 * 19 18 17 21 21 Br 1.89099 * 120.01068 * 179.72236 * 20 19 18 22 22 C 1.38328 * 119.98208 * 359.74500 * 20 19 18 23 23 C 1.38221 * 119.98673 * 359.97438 * 22 20 19 24 24 H 0.97005 * 119.99638 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.46700 * 60.00099 * 12 10 9 26 26 H 1.09000 * 109.46974 * 300.00473 * 12 10 9 27 27 H 1.08993 * 109.47839 * 60.00178 * 13 12 10 28 28 H 1.09000 * 109.47160 * 299.99740 * 13 12 10 29 29 H 1.09000 * 109.47050 * 299.99699 * 14 13 12 30 30 H 1.09001 * 109.46801 * 59.99811 * 14 13 12 31 31 H 1.08005 * 119.99604 * 0.02562 * 18 17 15 32 32 H 1.07999 * 120.00726 * 180.23635 * 19 18 17 33 33 H 1.08003 * 120.00715 * 179.97438 * 22 20 19 34 34 H 1.08006 * 119.99233 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2485 1.6178 0.0000 4 1 2.4960 2.0463 -1.4001 5 1 1.4459 2.6527 0.7000 6 1 3.5461 1.4402 0.7001 7 6 2.0082 -1.2017 0.0005 8 1 1.4682 -2.1370 0.0005 9 8 3.3574 -1.2017 0.0011 10 6 3.9672 -2.3984 0.0021 11 8 3.3070 -3.4149 0.0021 12 6 5.4721 -2.4773 0.0033 13 6 5.9059 -3.9445 0.0037 14 6 7.4338 -4.0246 0.0056 15 16 7.9482 -5.7641 0.0068 16 8 7.6614 -6.3420 1.2730 17 6 9.7068 -5.6575 0.0081 18 6 10.3979 -5.6220 -1.1887 19 6 11.7772 -5.5334 -1.1881 20 6 12.4669 -5.4910 0.0102 21 35 14.3545 -5.3778 0.0116 22 6 11.7753 -5.5319 1.2075 23 6 10.3956 -5.6146 1.2059 24 1 -0.4850 0.8401 -0.0004 25 1 5.8611 -1.9828 0.8934 26 1 5.8626 -1.9835 -0.8866 27 1 5.5169 -4.4387 -0.8865 28 1 5.5154 -4.4386 0.8934 29 1 7.8246 -3.5304 -0.8839 30 1 7.8224 -3.5305 0.8961 31 1 9.8596 -5.6592 -2.1243 32 1 12.3168 -5.5018 -2.1232 33 1 12.3134 -5.4992 2.1434 34 1 9.8556 -5.6469 2.1408 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069974333.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:59 Heat of formation + Delta-G solvation = -122.631386 kcal Electronic energy + Delta-G solvation = -20098.149365 eV Core-core repulsion = 16554.140388 eV Total energy + Delta-G solvation = -3544.008978 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 359.986 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.14641 -40.13340 -37.64651 -36.93603 -35.37672 -34.48081 -33.51645 -32.14335 -30.38685 -29.72829 -27.25531 -23.95006 -23.92223 -23.14769 -21.32013 -20.13108 -19.21983 -18.56906 -17.87867 -17.25777 -16.90797 -16.56756 -16.46023 -16.01147 -15.82794 -15.47265 -15.30886 -14.59172 -14.54202 -14.35394 -14.11476 -13.99046 -13.45338 -13.23132 -12.99675 -12.79558 -12.54272 -12.37578 -12.35402 -12.20960 -12.04269 -11.85938 -11.76187 -11.37487 -11.28942 -11.04091 -10.82435 -10.11218 -10.05736 -9.36662 -8.53734 -6.40746 -0.39912 0.22201 0.46883 0.80928 1.31744 1.34944 1.54848 1.60436 1.73299 2.28150 2.44112 2.50371 2.90740 2.92266 3.68097 3.86140 3.90958 3.97643 4.05698 4.28528 4.30615 4.48608 4.52734 4.54391 4.73556 4.86588 4.89286 4.90892 5.06393 5.07744 5.17277 5.28801 5.51449 5.70733 5.90908 6.57162 6.84277 7.61540 8.59422 Molecular weight = 359.99amu Principal moments of inertia in cm(-1) A = 0.022750 B = 0.001728 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.450336 B =16202.351628 C =17052.955494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.011 3.989 3 Si 0.988 3.012 4 H -0.255 1.255 5 H -0.269 1.269 6 H -0.251 1.251 7 C -0.409 4.409 8 H 0.055 0.945 9 O -0.261 6.261 10 C 0.403 3.597 11 O -0.579 6.579 12 C -0.090 4.090 13 C -0.090 4.090 14 C -0.447 4.447 15 S 1.392 4.608 16 O -0.916 6.916 17 C -0.454 4.454 18 C -0.023 4.023 19 C -0.110 4.110 20 C -0.070 4.070 21 Br -0.045 7.045 22 C -0.121 4.121 23 C -0.073 4.073 24 H 0.289 0.711 25 H 0.108 0.892 26 H 0.140 0.860 27 H 0.098 0.902 28 H 0.040 0.960 29 H 0.166 0.834 30 H 0.081 0.919 31 H 0.199 0.801 32 H 0.166 0.834 33 H 0.135 0.865 34 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.791 -9.706 -7.592 36.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.188 4.188 3 Si 0.807 3.193 4 H -0.179 1.179 5 H -0.194 1.194 6 H -0.174 1.174 7 C -0.485 4.485 8 H 0.073 0.927 9 O -0.171 6.171 10 C 0.251 3.749 11 O -0.475 6.475 12 C -0.128 4.128 13 C -0.129 4.129 14 C -0.583 4.583 15 S 1.591 4.409 16 O -0.912 6.912 17 C -0.551 4.551 18 C -0.043 4.043 19 C -0.130 4.130 20 C -0.149 4.149 21 Br 0.040 6.960 22 C -0.142 4.142 23 C -0.093 4.093 24 H 0.098 0.902 25 H 0.126 0.874 26 H 0.158 0.842 27 H 0.116 0.884 28 H 0.059 0.941 29 H 0.184 0.816 30 H 0.100 0.900 31 H 0.216 0.784 32 H 0.183 0.817 33 H 0.153 0.847 34 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 34.589 -10.647 -7.550 36.970 hybrid contribution -0.060 1.338 2.555 2.885 sum 34.529 -9.309 -4.995 36.109 Atomic orbital electron populations 1.69723 1.07681 1.30181 1.48402 1.25652 0.96039 1.02936 0.94214 0.85011 0.78833 0.75454 0.79970 1.17939 1.19411 1.17438 1.20312 0.78046 0.95643 1.54513 0.92728 1.83542 1.21782 1.33251 1.78512 1.24780 0.93683 0.81117 0.75361 1.90586 1.68944 1.37399 1.50539 1.21386 0.83958 0.99973 1.07485 1.20952 0.93327 0.94956 1.03660 1.27774 0.99931 1.20691 1.09948 1.69005 0.79674 0.85809 1.06384 1.93017 1.80683 1.70090 1.47428 1.28024 1.19846 1.09769 0.97453 1.21510 0.93182 0.91512 0.98056 1.21704 0.95318 0.98779 0.97213 1.22237 0.90955 1.04759 0.96995 1.96776 1.02746 1.97104 1.99325 1.21277 0.94310 1.00779 0.97803 1.21171 0.94305 0.95461 0.98355 0.90159 0.87415 0.84245 0.88390 0.94139 0.81598 0.89956 0.78401 0.81678 0.84681 0.86858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.01 13.96 21.62 0.30 -55.70 16 2 C 0.01 0.64 5.49 84.87 0.47 1.11 16 3 Si 0.99 43.29 28.62 68.60 1.96 45.25 16 4 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 5 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 6 H -0.25 -10.49 7.11 99.48 0.71 -9.78 16 7 C -0.41 -25.30 10.10 67.94 0.69 -24.61 16 8 H 0.05 3.86 7.09 -2.91 -0.02 3.84 16 9 O -0.26 -13.76 8.58 14.82 0.13 -13.63 16 10 C 0.40 18.46 7.91 71.24 0.56 19.02 16 11 O -0.58 -31.12 15.22 20.77 0.32 -30.80 16 12 C -0.09 -2.52 5.81 29.85 0.17 -2.35 16 13 C -0.09 -2.19 4.51 30.60 0.14 -2.05 16 14 C -0.45 -6.63 5.88 71.98 0.42 -6.20 16 15 S 1.39 20.57 13.54 -56.49 -0.77 19.80 16 16 O -0.92 -27.68 16.90 -148.98 -2.52 -30.20 16 17 C -0.45 -6.29 5.61 22.27 0.12 -6.17 16 18 C -0.02 -0.16 9.75 22.27 0.22 0.05 16 19 C -0.11 -1.01 9.79 22.29 0.22 -0.79 16 20 C -0.07 -0.97 6.22 22.31 0.14 -0.84 16 21 Br -0.05 -0.59 33.70 -20.37 -0.69 -1.27 16 22 C -0.12 -2.04 9.79 22.29 0.22 -1.82 16 23 C -0.07 -1.40 9.44 22.27 0.21 -1.19 16 24 H 0.29 15.81 8.31 -92.70 -0.77 15.04 16 25 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 26 H 0.14 2.80 8.14 -2.39 -0.02 2.78 16 27 H 0.10 2.11 8.10 -2.39 -0.02 2.09 16 28 H 0.04 1.26 8.10 -2.39 -0.02 1.24 16 29 H 0.17 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.20 -0.66 8.06 -2.91 -0.02 -0.69 16 32 H 0.17 0.66 8.06 -2.91 -0.02 0.63 16 33 H 0.14 2.07 8.06 -2.91 -0.02 2.04 16 34 H 0.11 2.63 7.46 -2.91 -0.02 2.61 16 Total: -1.00 -91.06 337.95 3.44 -87.62 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: 1.12 Total: 4.78 kcal Atomic # 6 Polarization: -29.42 SS G_CDS: 3.58 Total: -25.84 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: 0.30 Total: -55.70 kcal Atomic # 8 Polarization: -72.56 SS G_CDS: -2.07 Total: -74.64 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.96 Total: 45.25 kcal Atomic # 16 Polarization: 20.57 SS G_CDS: -0.77 Total: 19.80 kcal Atomic # 35 Polarization: -0.59 SS G_CDS: -0.69 Total: -1.27 kcal Total: -91.06 3.44 -87.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069974333.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.010 kcal (2) G-P(sol) polarization free energy of solvation -91.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds