Wall clock time and date at job start Tue Mar 31 2020 06:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47354 * 2 1 4 4 C 1.53001 * 109.46924 * 120.00433 * 2 1 3 5 5 C 1.53002 * 109.46775 * 239.99936 * 2 1 3 6 6 H 1.09002 * 109.47089 * 300.00029 * 5 2 1 7 7 O 1.42895 * 109.47162 * 60.00436 * 5 2 1 8 8 C 1.53008 * 109.46784 * 180.02562 * 5 2 1 9 9 N 1.46908 * 109.46814 * 180.02562 * 8 5 2 10 10 C 1.46902 * 110.99567 * 294.29887 * 9 8 5 11 11 C 1.53238 * 109.33719 * 172.75014 * 10 9 8 12 12 N 1.47075 * 108.52304 * 53.82623 * 11 10 9 13 13 C 1.34783 * 120.88094 * 128.83403 * 12 11 10 14 14 O 1.21545 * 119.99771 * 353.87058 * 13 12 11 15 15 C 1.47880 * 119.99957 * 173.86268 * 13 12 11 16 16 C 1.39921 * 120.02878 * 328.34154 * 15 13 12 17 17 C 1.38332 * 120.35936 * 179.71441 * 16 15 13 18 18 C 1.37750 * 120.41180 * 0.56325 * 17 16 15 19 19 C 1.40745 * 120.03651 * 359.71661 * 18 17 16 20 20 C 1.41448 * 120.17629 * 180.02562 * 19 18 17 21 21 H 1.07999 * 120.00250 * 149.29514 * 20 19 18 22 22 C 1.39934 * 119.99599 * 329.29951 * 20 19 18 23 23 N 1.30831 * 119.99989 * 164.88306 * 22 20 19 24 24 Si 1.86797 * 120.00176 * 344.87489 * 22 20 19 25 25 H 1.48503 * 109.47258 * 93.44726 * 24 22 20 26 26 H 1.48502 * 109.47354 * 213.44588 * 24 22 20 27 27 H 1.48497 * 109.47555 * 333.44700 * 24 22 20 28 28 C 1.39000 * 120.02521 * 148.61423 * 15 13 12 29 29 C 1.47080 * 118.24175 * 308.81852 * 12 11 10 30 30 C 1.46895 * 110.99507 * 170.00059 * 9 8 5 31 31 H 1.08995 * 109.47420 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47050 * 59.99481 * 1 2 3 33 33 H 1.09004 * 109.46603 * 300.00314 * 1 2 3 34 34 H 1.08998 * 109.46827 * 60.00295 * 3 2 1 35 35 H 1.09002 * 109.47097 * 179.97438 * 3 2 1 36 36 H 1.08992 * 109.47334 * 299.99862 * 3 2 1 37 37 H 1.08995 * 109.47256 * 59.99675 * 4 2 1 38 38 H 1.09002 * 109.47340 * 179.97438 * 4 2 1 39 39 H 1.09004 * 109.46870 * 299.99088 * 4 2 1 40 40 H 0.96704 * 114.00261 * 60.00276 * 7 5 2 41 41 H 1.09002 * 109.46969 * 299.99659 * 8 5 2 42 42 H 1.08992 * 109.47145 * 60.00036 * 8 5 2 43 43 H 1.09001 * 109.48971 * 292.70592 * 10 9 8 44 44 H 1.09000 * 109.49283 * 52.79227 * 10 9 8 45 45 H 1.08999 * 109.62762 * 294.11783 * 11 10 9 46 46 H 1.08998 * 109.78700 * 173.63639 * 11 10 9 47 47 H 1.08006 * 119.81652 * 359.97438 * 16 15 13 48 48 H 1.07997 * 119.79355 * 180.25926 * 17 16 15 49 49 H 1.07993 * 119.98047 * 179.69925 * 18 17 16 50 50 H 0.97001 * 120.00312 * 179.97438 * 23 22 20 51 51 H 1.07994 * 120.19745 * 0.02995 * 28 15 13 52 52 H 1.09006 * 109.62783 * 291.47602 * 29 12 11 53 53 H 1.08995 * 109.79419 * 170.98240 * 29 12 11 54 54 H 1.08996 * 109.49458 * 307.20668 * 30 9 8 55 55 H 1.08999 * 109.49850 * 67.29295 * 30 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 1.2492 5 6 2.0399 -0.7213 -1.2493 6 1 1.6765 -1.7490 -1.2492 7 8 1.5636 -0.0476 -2.4160 8 6 3.5700 -0.7218 -1.2490 9 7 4.0596 -1.4139 -2.4488 10 6 3.7024 -2.8385 -2.4174 11 6 4.0682 -3.4830 -3.7586 12 7 5.4841 -3.2029 -4.0409 13 6 6.3339 -4.1965 -4.3686 14 8 5.9621 -5.3529 -4.3258 15 6 7.7184 -3.8796 -4.7804 16 6 7.9917 -2.6860 -5.4575 17 6 9.2852 -2.3799 -5.8407 18 6 10.3172 -3.2515 -5.5705 19 6 10.0606 -4.4595 -4.8955 20 6 11.1181 -5.3563 -4.6161 21 1 11.0771 -5.9827 -3.7372 22 6 12.2176 -5.4318 -5.4784 23 7 13.3167 -6.0237 -5.0867 24 14 12.1161 -4.6878 -7.1888 25 1 12.6440 -3.3002 -7.1571 26 1 12.9230 -5.5030 -8.1319 27 1 10.7005 -4.6687 -7.6371 28 6 8.7484 -4.7698 -4.5001 29 6 5.9483 -1.8098 -3.9565 30 6 5.5085 -1.2311 -2.6073 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 0.5139 0.8900 34 1 1.6767 1.9562 0.8900 35 1 3.1301 1.4424 0.0005 36 1 1.6768 1.9563 -0.8899 37 1 1.6766 -1.7490 1.2492 38 1 3.1300 -0.7218 1.2490 39 1 1.6767 -0.2074 2.1392 40 1 1.8491 0.8740 -2.4822 41 1 3.9337 0.3057 -1.2488 42 1 3.9329 -1.2359 -0.3590 43 1 4.2497 -3.3330 -1.6149 44 1 2.6311 -2.9411 -2.2446 45 1 3.4469 -3.0615 -4.5489 46 1 3.9115 -4.5603 -3.7052 47 1 7.1890 -1.9980 -5.6785 48 1 9.4864 -1.4542 -6.3592 49 1 11.3236 -3.0077 -5.8771 50 1 14.0788 -6.0764 -5.6845 51 1 8.5413 -5.6944 -3.9820 52 1 5.5077 -1.2274 -4.7658 53 1 7.0351 -1.7777 -4.0318 54 1 5.7470 -0.1682 -2.5724 55 1 6.0307 -1.7481 -1.8023 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069979475.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:27 Heat of formation + Delta-G solvation = -74.500759 kcal Electronic energy + Delta-G solvation = -33078.763777 eV Core-core repulsion = 28886.574693 eV Total energy + Delta-G solvation = -4192.189083 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 360.220 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.58219 -40.41567 -39.24515 -38.49142 -35.87290 -35.53705 -35.29547 -33.00976 -31.98895 -31.66761 -30.29348 -28.23543 -28.06026 -27.26400 -27.16475 -25.19199 -24.32285 -23.36251 -22.48317 -22.03225 -20.49664 -19.99290 -19.28032 -17.98564 -17.77177 -17.27295 -17.03658 -16.72671 -16.59303 -16.37961 -16.19072 -15.93667 -15.64558 -15.42344 -15.28186 -14.87026 -14.68186 -14.54859 -14.52560 -14.38825 -14.07234 -13.88275 -13.64189 -13.25306 -13.08159 -12.93228 -12.87159 -12.86573 -12.76543 -12.69269 -12.46692 -12.40303 -12.21913 -12.17106 -12.11501 -11.98235 -11.72117 -11.66343 -11.53354 -11.27594 -11.21647 -10.74236 -10.56718 -9.88171 -9.61615 -9.50922 -9.23897 -8.91025 -6.56834 0.22180 0.71562 1.24616 1.41070 1.48056 1.79757 1.95396 2.11223 2.58348 2.78700 3.38406 3.55422 3.62882 3.68189 3.81632 3.93970 3.94546 4.04105 4.11459 4.22794 4.23616 4.26808 4.35975 4.41258 4.42534 4.50405 4.55313 4.60359 4.69805 4.73407 4.77296 4.81065 4.82979 4.83197 4.88162 4.89408 4.92507 5.00168 5.04599 5.06415 5.10627 5.13827 5.16677 5.33408 5.40785 5.47217 5.48795 5.50251 5.61960 5.70534 5.82827 5.96966 6.00031 6.10038 6.27810 6.37041 6.63704 6.73014 6.98393 7.09751 8.17983 Molecular weight = 360.22amu Principal moments of inertia in cm(-1) A = 0.022899 B = 0.001956 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.454693 B =14311.291127 C =14428.237557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.096 4.096 3 C -0.147 4.147 4 C -0.145 4.145 5 C 0.128 3.872 6 H 0.082 0.918 7 O -0.558 6.558 8 C 0.021 3.979 9 N -0.525 5.525 10 C 0.050 3.950 11 C 0.116 3.884 12 N -0.603 5.603 13 C 0.560 3.440 14 O -0.589 6.589 15 C -0.108 4.108 16 C -0.188 4.188 17 C -0.079 4.079 18 C -0.225 4.225 19 C 0.067 3.933 20 C -0.487 4.487 21 H 0.049 0.951 22 C 0.043 3.957 23 N -0.852 5.852 24 Si 0.969 3.031 25 H -0.243 1.243 26 H -0.280 1.280 27 H -0.254 1.254 28 C -0.169 4.169 29 C 0.092 3.908 30 C 0.043 3.957 31 H 0.046 0.954 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.051 0.949 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.380 0.620 41 H 0.098 0.902 42 H 0.042 0.958 43 H 0.021 0.979 44 H 0.100 0.900 45 H 0.087 0.913 46 H 0.074 0.926 47 H 0.154 0.846 48 H 0.151 0.849 49 H 0.108 0.892 50 H 0.295 0.705 51 H 0.083 0.917 52 H 0.097 0.903 53 H 0.110 0.890 54 H 0.115 0.885 55 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.009 20.440 7.312 30.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.097 4.097 3 C -0.204 4.204 4 C -0.203 4.203 5 C 0.069 3.931 6 H 0.100 0.900 7 O -0.365 6.365 8 C -0.107 4.107 9 N -0.249 5.249 10 C -0.079 4.079 11 C -0.006 4.006 12 N -0.335 5.335 13 C 0.351 3.649 14 O -0.471 6.471 15 C -0.111 4.111 16 C -0.207 4.207 17 C -0.096 4.096 18 C -0.244 4.244 19 C 0.065 3.935 20 C -0.516 4.516 21 H 0.067 0.933 22 C -0.171 4.171 23 N -0.478 5.478 24 Si 0.791 3.209 25 H -0.167 1.167 26 H -0.207 1.207 27 H -0.178 1.178 28 C -0.190 4.190 29 C -0.029 4.029 30 C -0.085 4.085 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.229 0.771 41 H 0.116 0.884 42 H 0.060 0.940 43 H 0.039 0.961 44 H 0.118 0.882 45 H 0.105 0.895 46 H 0.093 0.907 47 H 0.171 0.829 48 H 0.168 0.832 49 H 0.126 0.874 50 H 0.105 0.895 51 H 0.102 0.898 52 H 0.115 0.885 53 H 0.128 0.872 54 H 0.133 0.867 55 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -22.450 19.359 6.843 30.424 hybrid contribution 1.220 -0.842 0.777 1.674 sum -21.230 18.518 7.620 29.183 Atomic orbital electron populations 1.21756 0.93876 1.01567 1.01986 1.21176 0.96556 0.96825 0.95104 1.21949 1.01351 0.94380 1.02766 1.21927 1.01147 1.00154 0.97048 1.21820 0.90882 0.95962 0.84481 0.89969 1.86581 1.76449 1.29785 1.43693 1.23049 0.96786 1.00270 0.90559 1.61945 1.13107 1.10679 1.39216 1.22404 1.01736 0.88359 0.95363 1.21723 0.80322 1.00798 0.97734 1.48064 1.09488 1.08109 1.67873 1.18809 0.85740 0.84431 0.75932 1.90675 1.78723 1.21748 1.55976 1.19621 0.91345 0.97121 1.02980 1.21255 0.97675 0.96633 1.05132 1.21062 0.91935 0.99053 0.97584 1.21400 0.99319 0.95426 1.08248 1.17765 0.91651 0.92557 0.91522 1.19452 1.01744 1.20812 1.09620 0.93282 1.26895 0.92712 0.93333 1.04157 1.69702 1.03226 1.35976 1.38917 0.85462 0.80022 0.79059 0.76337 1.16734 1.20660 1.17772 1.21105 0.92243 0.98524 1.07120 1.22682 1.02210 0.79580 0.98441 1.22563 0.87484 1.02525 0.95947 0.93445 0.92312 0.92184 0.91993 0.91893 0.91542 0.93012 0.92371 0.91790 0.77076 0.88420 0.93986 0.96050 0.88160 0.89477 0.90730 0.82863 0.83150 0.87403 0.89476 0.89837 0.88489 0.87194 0.86730 0.96027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.40 8.33 71.98 0.60 -0.80 16 2 C -0.10 -0.91 0.63 -52.18 -0.03 -0.94 16 3 C -0.15 -1.01 7.81 71.98 0.56 -0.45 16 4 C -0.15 -1.43 8.12 71.98 0.58 -0.85 16 5 C 0.13 1.59 2.17 30.60 0.07 1.65 16 6 H 0.08 1.25 6.40 -2.39 -0.02 1.23 16 7 O -0.56 -7.90 12.49 -148.98 -1.86 -9.76 16 8 C 0.02 0.27 3.92 86.30 0.34 0.61 16 9 N -0.53 -9.13 4.50 -895.22 -4.03 -13.16 16 10 C 0.05 1.04 5.46 86.38 0.47 1.52 16 11 C 0.12 2.99 6.61 86.35 0.57 3.56 16 12 N -0.60 -17.96 3.01 -821.30 -2.47 -20.43 16 13 C 0.56 22.46 7.43 86.80 0.65 23.11 16 14 O -0.59 -28.16 16.19 -3.86 -0.06 -28.22 16 15 C -0.11 -4.52 5.38 -20.13 -0.11 -4.63 16 16 C -0.19 -6.40 7.40 22.70 0.17 -6.23 16 17 C -0.08 -2.76 10.01 22.18 0.22 -2.54 16 18 C -0.22 -9.91 7.09 22.77 0.16 -9.75 16 19 C 0.07 3.49 5.11 -21.32 -0.11 3.38 16 20 C -0.49 -28.06 9.59 23.47 0.23 -27.83 16 21 H 0.05 3.10 8.06 -2.91 -0.02 3.08 16 22 C 0.04 2.32 5.44 85.25 0.46 2.79 16 23 N -0.85 -47.26 13.93 21.82 0.30 -46.95 16 24 Si 0.97 42.03 24.45 68.60 1.68 43.71 16 25 H -0.24 -9.42 6.66 99.48 0.66 -8.76 16 26 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 27 H -0.25 -11.32 6.80 99.48 0.68 -10.65 16 28 C -0.17 -8.51 9.34 23.01 0.21 -8.29 16 29 C 0.09 2.04 4.83 86.35 0.42 2.46 16 30 C 0.04 0.79 5.62 86.39 0.49 1.28 16 31 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.66 7.68 -2.39 -0.02 0.65 16 33 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.06 0.40 6.43 -2.39 -0.02 0.38 16 36 H 0.07 0.36 6.78 -2.39 -0.02 0.35 16 37 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.06 0.59 6.43 -2.39 -0.02 0.57 16 39 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.38 3.26 7.33 -74.05 -0.54 2.72 16 41 H 0.10 0.96 6.26 -2.39 -0.01 0.94 16 42 H 0.04 0.59 6.41 -2.39 -0.02 0.58 16 43 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.10 1.80 6.16 -2.39 -0.01 1.79 16 45 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.07 2.22 7.04 -2.39 -0.02 2.20 16 47 H 0.15 3.95 5.61 -2.91 -0.02 3.94 16 48 H 0.15 3.92 8.06 -2.91 -0.02 3.89 16 49 H 0.11 4.65 4.56 -2.91 -0.01 4.64 16 50 H 0.29 14.60 8.30 -92.71 -0.77 13.83 16 51 H 0.08 4.52 7.94 -2.91 -0.02 4.49 16 52 H 0.10 1.77 7.93 -2.38 -0.02 1.75 16 53 H 0.11 2.66 4.50 -2.39 -0.01 2.65 16 54 H 0.11 1.47 7.99 -2.39 -0.02 1.45 16 55 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 Total: -1.00 -70.21 410.41 -0.21 -70.42 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: 0.29 Total: 26.35 kcal Atomic # 6 Polarization: -27.90 SS G_CDS: 5.95 Total: -21.96 kcal Atomic # 7 Polarization: -74.35 SS G_CDS: -6.19 Total: -80.54 kcal Atomic # 8 Polarization: -36.06 SS G_CDS: -1.92 Total: -37.98 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 1.68 Total: 43.71 kcal Total: -70.21 -0.21 -70.42 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069979475.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.082 kcal (2) G-P(sol) polarization free energy of solvation -70.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds