Wall clock time and date at job start Tue Mar 31 2020 05:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 C 1.34781 * 119.99894 * 240.00308 * 12 2 1 15 15 O 1.21280 * 120.00291 * 359.97438 * 14 12 2 16 16 C 1.50699 * 119.99910 * 180.02562 * 14 12 2 17 17 C 1.53000 * 109.47242 * 180.02562 * 16 14 12 18 18 C 1.53003 * 109.47194 * 179.97438 * 17 16 14 19 19 N 1.46900 * 109.47116 * 179.97438 * 18 17 16 20 20 C 1.46961 * 110.99813 * 293.79560 * 19 18 17 21 21 C 1.53049 * 109.36381 * 176.81021 * 20 19 18 22 22 N 1.46960 * 109.36583 * 58.40132 * 21 20 19 23 23 C 1.39666 * 111.00128 * 176.81104 * 22 21 20 24 24 C 1.38909 * 120.07595 * 123.52644 * 23 22 21 25 25 C 1.38103 * 119.92770 * 179.76873 * 24 23 22 26 26 C 1.38293 * 120.07239 * 0.50327 * 25 24 23 27 27 C 1.38286 * 120.14810 * 359.74834 * 26 25 24 28 28 C 1.38106 * 120.07491 * 359.97438 * 27 26 25 29 29 C 1.46956 * 110.88071 * 300.68284 * 22 21 20 30 30 C 1.46951 * 111.00114 * 169.99939 * 19 18 17 31 31 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 33 33 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 34 34 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 35 35 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 36 36 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 37 37 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 38 38 H 1.09005 * 109.46708 * 299.99547 * 16 14 12 39 39 H 1.09000 * 109.47504 * 59.99304 * 16 14 12 40 40 H 1.09005 * 109.46782 * 299.99358 * 17 16 14 41 41 H 1.09000 * 109.47104 * 59.99474 * 17 16 14 42 42 H 1.09005 * 109.46763 * 299.99408 * 18 17 16 43 43 H 1.09000 * 109.47492 * 59.99751 * 18 17 16 44 44 H 1.08992 * 109.49143 * 296.77827 * 20 19 18 45 45 H 1.09004 * 109.48680 * 56.84801 * 20 19 18 46 46 H 1.09005 * 109.49356 * 298.43607 * 21 20 19 47 47 H 1.08999 * 109.49039 * 178.36596 * 21 20 19 48 48 H 1.08005 * 120.03684 * 0.02562 * 24 23 22 49 49 H 1.08002 * 119.96455 * 180.25323 * 25 24 23 50 50 H 1.07992 * 119.92289 * 179.76701 * 26 25 24 51 51 H 1.08004 * 119.95947 * 180.02562 * 27 26 25 52 52 H 1.08001 * 120.03188 * 179.97438 * 28 27 26 53 53 H 1.09002 * 109.48886 * 299.34840 * 29 22 21 54 54 H 1.08994 * 109.49027 * 179.28626 * 29 22 21 55 55 H 1.09001 * 109.48869 * 303.15301 * 30 19 18 56 56 H 1.08998 * 109.49496 * 63.21633 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.7931 -0.0354 2.0834 15 8 3.0865 1.1256 1.8912 16 6 3.2959 -0.7459 3.3136 17 6 4.1452 0.2160 4.1468 18 6 4.6551 -0.5052 5.3962 19 7 5.4711 0.4183 6.1958 20 6 6.7017 0.7867 5.4820 21 6 7.4830 1.8084 6.3116 22 7 7.7932 1.2325 7.6277 23 6 8.5690 2.1105 8.3879 24 6 8.1311 2.5198 9.6410 25 6 8.9029 3.3843 10.3922 26 6 10.1056 3.8506 9.8938 27 6 10.5421 3.4493 8.6445 28 6 9.7779 2.5805 7.8905 29 6 6.5627 0.8640 8.3414 30 6 5.7814 -0.1576 7.5117 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 0.7088 1.1611 -3.4845 35 1 2.4158 -2.7376 0.9718 36 1 1.6238 -2.2851 2.5003 37 1 0.6905 -2.3002 0.9847 38 1 2.4483 -1.0888 3.9070 39 1 3.9016 -1.6021 3.0167 40 1 4.9929 0.5593 3.5536 41 1 3.5391 1.0719 4.4437 42 1 3.8073 -0.8481 5.9892 43 1 5.2612 -1.3613 5.0997 44 1 7.3137 -0.1021 5.3295 45 1 6.4454 1.2223 4.5163 46 1 6.8815 2.7082 6.4412 47 1 8.4103 2.0614 5.7977 48 1 7.1900 2.1591 10.0292 49 1 8.5649 3.6996 11.3683 50 1 10.7054 4.5295 10.4816 51 1 11.4821 3.8150 8.2583 52 1 10.1192 2.2678 6.9147 53 1 5.9506 1.7530 8.4940 54 1 6.8189 0.4285 9.3071 55 1 4.8541 -0.4106 8.0257 56 1 6.3829 -1.0574 7.3823 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071909760.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:02 Heat of formation + Delta-G solvation = -11.957351 kcal Electronic energy + Delta-G solvation = -31623.424907 eV Core-core repulsion = 27531.666572 eV Total energy + Delta-G solvation = -4091.758336 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 359.231 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.37305 -40.72670 -39.32444 -37.27359 -36.75035 -34.85524 -34.05662 -32.61529 -31.56090 -31.40703 -30.60358 -28.20843 -27.54212 -27.26624 -26.01151 -25.17614 -23.37415 -22.76962 -22.48132 -21.69521 -20.77691 -19.80208 -18.69930 -18.49516 -17.75661 -17.16314 -16.93044 -16.82422 -16.55002 -16.31159 -16.04459 -15.94272 -15.60286 -15.42348 -14.99229 -14.92927 -14.65510 -14.55055 -14.36746 -14.22521 -13.89842 -13.50901 -13.46582 -13.31552 -13.06900 -12.96777 -12.93063 -12.69580 -12.65720 -12.61800 -12.49477 -12.35624 -12.21535 -12.16795 -12.13395 -12.10163 -11.84203 -11.73579 -11.40652 -11.17908 -10.68511 -10.62416 -10.44015 -9.85436 -9.32686 -9.28385 -8.81485 -8.14309 -6.31280 0.45250 0.48987 1.40554 1.43024 1.50491 1.88524 2.33423 2.50768 2.61716 2.89694 2.97902 3.13032 3.73529 3.75940 3.89578 3.96315 4.05537 4.08288 4.14845 4.22132 4.28012 4.30466 4.34713 4.42046 4.47068 4.56631 4.57928 4.59987 4.62442 4.69179 4.72815 4.75870 4.76712 4.78812 4.84096 4.86140 4.88978 4.94187 5.01191 5.05799 5.10291 5.12762 5.22667 5.30951 5.39696 5.47094 5.51522 5.64764 5.66299 5.69412 5.82273 5.95202 6.05480 6.06759 6.11606 6.17279 6.35081 6.77137 6.90146 7.34194 7.54348 8.89619 Molecular weight = 359.23amu Principal moments of inertia in cm(-1) A = 0.019322 B = 0.001533 C = 0.001477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.801793 B =18263.508713 C =18951.956338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.259 3.741 3 H 0.005 0.995 4 C -0.538 4.538 5 H 0.060 0.940 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.965 3.035 9 H -0.284 1.284 10 H -0.278 1.278 11 H -0.262 1.262 12 N -0.604 5.604 13 C 0.083 3.917 14 C 0.488 3.512 15 O -0.610 6.610 16 C -0.121 4.121 17 C -0.092 4.092 18 C 0.068 3.932 19 N -0.553 5.553 20 C 0.055 3.945 21 C 0.067 3.933 22 N -0.497 5.497 23 C 0.096 3.904 24 C -0.182 4.182 25 C -0.101 4.101 26 C -0.155 4.155 27 C -0.103 4.103 28 C -0.156 4.156 29 C 0.055 3.945 30 C 0.059 3.941 31 H 0.048 0.952 32 H 0.019 0.981 33 H 0.065 0.935 34 H 0.264 0.736 35 H 0.054 0.946 36 H 0.100 0.900 37 H 0.067 0.933 38 H 0.121 0.879 39 H 0.111 0.889 40 H 0.046 0.954 41 H 0.053 0.947 42 H 0.096 0.904 43 H 0.046 0.954 44 H 0.044 0.956 45 H 0.077 0.923 46 H 0.039 0.961 47 H 0.090 0.910 48 H 0.136 0.864 49 H 0.141 0.859 50 H 0.140 0.860 51 H 0.140 0.860 52 H 0.125 0.875 53 H 0.049 0.951 54 H 0.099 0.901 55 H 0.101 0.899 56 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.793 -3.675 27.695 31.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.156 3.844 3 H 0.023 0.977 4 C -0.577 4.577 5 H 0.078 0.922 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.790 3.210 9 H -0.209 1.209 10 H -0.203 1.203 11 H -0.186 1.186 12 N -0.335 5.335 13 C -0.059 4.059 14 C 0.278 3.722 15 O -0.493 6.493 16 C -0.161 4.161 17 C -0.130 4.130 18 C -0.060 4.060 19 N -0.278 5.278 20 C -0.073 4.073 21 C -0.059 4.059 22 N -0.212 5.212 23 C -0.001 4.001 24 C -0.202 4.202 25 C -0.120 4.120 26 C -0.174 4.174 27 C -0.121 4.121 28 C -0.177 4.177 29 C -0.072 4.072 30 C -0.069 4.069 31 H 0.067 0.933 32 H 0.038 0.962 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.118 0.882 37 H 0.085 0.915 38 H 0.139 0.861 39 H 0.129 0.871 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.114 0.886 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.095 0.905 46 H 0.058 0.942 47 H 0.108 0.892 48 H 0.153 0.847 49 H 0.159 0.841 50 H 0.158 0.842 51 H 0.158 0.842 52 H 0.143 0.857 53 H 0.067 0.933 54 H 0.117 0.883 55 H 0.119 0.881 56 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 13.771 -3.051 27.385 30.805 hybrid contribution 0.209 0.009 -1.462 1.477 sum 13.981 -3.042 25.923 29.609 Atomic orbital electron populations 1.21866 0.97223 1.00098 0.99842 1.18504 0.91623 0.92153 0.82090 0.97684 1.21560 1.31874 1.13022 0.91227 0.92185 1.25770 0.95121 0.95678 1.02105 1.70026 1.37323 1.23931 1.24433 0.85503 0.78350 0.79016 0.78098 1.20933 1.20336 1.18607 1.48282 1.49277 1.13497 1.22430 1.21820 1.01312 0.80257 1.02536 1.21610 0.78051 0.86780 0.85760 1.90618 1.60184 1.20036 1.78453 1.21620 1.02101 0.99498 0.92840 1.21200 0.98795 0.97854 0.95172 1.22043 0.97486 0.92857 0.93597 1.62106 1.18219 1.43425 1.04054 1.22181 0.89985 0.98089 0.97038 1.22232 0.99711 0.95807 0.88124 1.59304 1.18823 1.38903 1.04219 1.19166 0.94479 0.92370 0.94134 1.21532 1.01597 1.01144 0.95968 1.21330 0.94489 0.96046 1.00099 1.21406 0.97476 1.01954 0.96561 1.21312 0.99868 0.96371 0.94571 1.20992 0.94476 1.00723 1.01478 1.22389 0.88522 0.98810 0.97484 1.22224 1.00005 0.95468 0.89212 0.93258 0.96174 0.91579 0.92683 0.92753 0.88188 0.91451 0.86094 0.87123 0.93515 0.92819 0.88568 0.93583 0.93818 0.90450 0.94250 0.89178 0.84676 0.84122 0.84224 0.84205 0.85726 0.93277 0.88318 0.88052 0.93890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.45 8.95 71.98 0.64 -5.80 16 2 C 0.26 13.72 2.64 44.24 0.12 13.83 16 3 H 0.01 0.33 6.90 -2.38 -0.02 0.31 16 4 C -0.54 -29.67 8.37 25.60 0.21 -29.46 16 5 H 0.06 3.20 7.65 -2.91 -0.02 3.17 16 6 C 0.01 0.70 5.30 84.66 0.45 1.15 16 7 N -0.92 -53.76 11.32 21.45 0.24 -53.52 16 8 Si 0.97 43.44 29.54 68.60 2.03 45.47 16 9 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 12 N -0.60 -25.45 2.75 -826.81 -2.28 -27.72 16 13 C 0.08 2.50 9.48 127.77 1.21 3.71 16 14 C 0.49 19.91 7.67 87.66 0.67 20.58 16 15 O -0.61 -31.52 15.31 -3.03 -0.05 -31.57 16 16 C -0.12 -3.07 4.25 29.85 0.13 -2.95 16 17 C -0.09 -2.36 4.44 30.60 0.14 -2.23 16 18 C 0.07 1.22 4.96 86.30 0.43 1.65 16 19 N -0.55 -10.77 4.71 -895.71 -4.22 -14.99 16 20 C 0.06 1.14 5.41 86.31 0.47 1.61 16 21 C 0.07 1.31 5.38 86.31 0.46 1.78 16 22 N -0.50 -9.20 4.75 -694.79 -3.30 -12.50 16 23 C 0.10 1.78 5.64 38.22 0.22 2.00 16 24 C -0.18 -2.94 8.82 22.40 0.20 -2.74 16 25 C -0.10 -1.40 10.04 22.25 0.22 -1.18 16 26 C -0.16 -2.08 10.04 22.29 0.22 -1.86 16 27 C -0.10 -1.51 10.04 22.25 0.22 -1.28 16 28 C -0.16 -2.74 9.19 22.40 0.21 -2.54 16 29 C 0.05 0.85 4.29 86.31 0.37 1.22 16 30 C 0.06 0.88 5.61 86.31 0.48 1.37 16 31 H 0.05 2.16 6.66 -2.39 -0.02 2.15 16 32 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.07 3.60 6.07 -2.39 -0.01 3.59 16 34 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 35 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.10 2.05 6.44 -2.38 -0.02 2.03 16 37 H 0.07 2.09 6.43 -2.39 -0.02 2.08 16 38 H 0.12 2.28 7.40 -2.38 -0.02 2.27 16 39 H 0.11 2.32 8.11 -2.39 -0.02 2.30 16 40 H 0.05 1.41 6.45 -2.38 -0.02 1.39 16 41 H 0.05 1.63 8.10 -2.39 -0.02 1.61 16 42 H 0.10 1.38 8.03 -2.38 -0.02 1.36 16 43 H 0.05 0.76 8.12 -2.39 -0.02 0.74 16 44 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.08 1.81 6.34 -2.38 -0.02 1.79 16 46 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 47 H 0.09 1.63 6.82 -2.39 -0.02 1.61 16 48 H 0.14 1.81 5.81 -2.91 -0.02 1.79 16 49 H 0.14 1.29 8.06 -2.91 -0.02 1.26 16 50 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 51 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 52 H 0.12 2.04 7.19 -2.91 -0.02 2.02 16 53 H 0.05 0.83 7.57 -2.39 -0.02 0.81 16 54 H 0.10 1.23 7.18 -2.39 -0.02 1.22 16 55 H 0.10 1.17 8.07 -2.39 -0.02 1.15 16 56 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -74.29 428.75 0.35 -73.95 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: 0.85 Total: 22.03 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: 7.07 Total: -1.14 kcal Atomic # 7 Polarization: -99.18 SS G_CDS: -9.55 Total: -108.73 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -0.05 Total: -31.57 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -74.29 0.35 -73.95 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071909760.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.989 kcal (2) G-P(sol) polarization free energy of solvation -74.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds