Wall clock time and date at job start Tue Mar 31 2020 04:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47023 * 2 1 4 4 N 1.46493 * 109.47398 * 239.99503 * 2 1 3 5 5 S 1.65608 * 119.99916 * 95.00006 * 4 2 1 6 6 O 1.42093 * 106.40109 * 178.26884 * 5 4 2 7 7 O 1.42107 * 106.40103 * 311.18868 * 5 4 2 8 8 N 1.65596 * 107.21615 * 64.72375 * 5 4 2 9 9 C 1.46506 * 119.99933 * 90.00209 * 8 5 4 10 10 C 1.46497 * 120.00628 * 270.00019 * 8 5 4 11 11 C 1.50704 * 109.46944 * 94.99700 * 10 8 5 12 12 H 1.07995 * 119.99735 * 0.02562 * 11 10 8 13 13 C 1.37881 * 119.99763 * 180.02562 * 11 10 8 14 14 N 1.31515 * 119.99888 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 120.00265 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.47089 * 89.99700 * 15 13 11 17 17 H 1.48500 * 109.47401 * 210.00293 * 15 13 11 18 18 H 1.48501 * 109.47073 * 330.00043 * 15 13 11 19 19 C 1.50701 * 109.47010 * 119.99582 * 2 1 3 20 20 N 1.28667 * 124.93075 * 254.99949 * 19 2 1 21 21 C 1.32525 * 117.87789 * 179.97438 * 20 19 2 22 22 C 1.34612 * 113.15815 * 0.03652 * 21 20 19 23 23 S 1.70918 * 124.92836 * 74.69632 * 19 2 1 24 24 C 1.50997 * 125.22433 * 179.97438 * 22 21 20 25 25 C 1.53278 * 108.58933 * 343.97562 * 24 22 21 26 26 C 1.53150 * 108.99309 * 49.25053 * 25 24 22 27 27 C 1.52131 * 124.19904 * 180.02562 * 21 20 19 28 28 H 1.09003 * 109.47189 * 300.00420 * 1 2 3 29 29 H 1.08995 * 109.47096 * 60.00197 * 1 2 3 30 30 H 1.08997 * 109.47293 * 180.02562 * 1 2 3 31 31 H 0.97000 * 120.00740 * 274.72668 * 4 2 1 32 32 H 1.09005 * 109.46842 * 89.99489 * 9 8 5 33 33 H 1.08996 * 109.47754 * 209.99993 * 9 8 5 34 34 H 1.09007 * 109.46827 * 330.00107 * 9 8 5 35 35 H 1.08993 * 109.47410 * 215.00042 * 10 8 5 36 36 H 1.09002 * 109.46648 * 335.00226 * 10 8 5 37 37 H 0.96991 * 119.99806 * 179.97438 * 14 13 11 38 38 H 1.09006 * 109.62066 * 224.24251 * 24 22 21 39 39 H 1.09002 * 109.77068 * 103.79525 * 24 22 21 40 40 H 1.08997 * 109.54869 * 289.40566 * 25 24 22 41 41 H 1.08994 * 109.63225 * 169.15240 * 25 24 22 42 42 H 1.09004 * 109.47352 * 169.62183 * 26 25 24 43 43 H 1.08999 * 109.47722 * 49.60828 * 26 25 24 44 44 H 1.08999 * 109.59475 * 282.21387 * 27 21 20 45 45 H 1.09005 * 109.59445 * 42.52434 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1960 5 16 2.4122 0.1771 -2.5505 6 8 2.8837 -0.7629 -3.5061 7 8 1.3218 1.0547 -2.7959 8 7 3.7049 1.1355 -2.1598 9 6 5.0697 0.6368 -2.3475 10 6 3.4840 2.4819 -1.6265 11 6 3.5206 2.4380 -0.1206 12 1 3.6917 1.5009 0.3883 13 6 3.3355 3.5942 0.6075 14 7 3.3679 3.5560 1.9217 15 14 3.0388 5.2149 -0.2727 16 1 1.5807 5.4065 -0.4789 17 1 3.5733 6.3299 0.5496 18 1 3.7267 5.1966 -1.5887 19 6 2.0323 -0.7103 1.2305 20 7 2.5353 -0.1296 2.2627 21 6 2.9335 -0.8927 3.2704 22 6 2.7426 -2.2064 3.0473 23 16 2.0098 -2.4038 1.4606 24 6 3.0976 -3.3139 4.0103 25 6 4.0518 -2.7525 5.0704 26 6 3.4680 -1.4506 5.6271 27 6 3.5463 -0.3593 4.5566 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 2.1148 -1.6559 -1.1935 32 1 5.4154 0.8926 -3.3491 33 1 5.7282 1.0930 -1.6083 34 1 5.0809 -0.4462 -2.2248 35 1 4.2655 3.1493 -1.9896 36 1 2.5116 2.8480 -1.9559 37 1 3.2381 4.3694 2.4338 38 1 3.5863 -4.1253 3.4709 39 1 2.1939 -3.6871 4.4922 40 1 5.0229 -2.5524 4.6177 41 1 4.1677 -3.4750 5.8782 42 1 4.0386 -1.1419 6.5030 43 1 2.4273 -1.6103 5.9090 44 1 4.5883 -0.0916 4.3814 45 1 2.9936 0.5199 4.8877 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071914102.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:34 Heat of formation + Delta-G solvation = -38.757592 kcal Electronic energy + Delta-G solvation = -29530.985618 eV Core-core repulsion = 25608.762676 eV Total energy + Delta-G solvation = -3922.222943 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 359.112 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.85003 -37.09987 -36.63655 -35.66983 -35.32407 -35.18986 -32.40831 -30.77017 -30.03856 -28.52238 -28.39140 -25.17473 -24.74371 -23.52713 -22.01875 -21.94289 -20.74866 -19.14952 -18.10549 -17.90575 -17.27519 -16.77590 -16.68053 -15.86481 -15.12947 -15.00201 -14.56664 -14.29627 -14.12937 -13.87179 -13.72853 -13.69574 -13.16407 -12.94013 -12.91367 -12.61406 -12.49025 -12.39390 -12.16050 -11.85285 -11.79677 -11.63002 -11.50312 -11.41640 -11.26699 -11.22377 -10.92151 -10.88073 -10.76046 -10.71033 -10.49183 -10.35633 -10.20486 -9.57733 -9.25698 -8.92349 -8.82088 -8.58104 -8.23207 -8.09909 -6.07258 -4.10734 1.00792 1.20978 1.64984 2.08922 3.17167 3.28558 3.35042 3.39437 3.47048 4.06448 4.32546 4.38459 4.76187 4.84424 4.88365 4.94477 5.11466 5.19930 5.23706 5.44162 5.50505 5.52321 5.57612 5.64403 5.68847 5.79048 5.85571 5.92667 6.00507 6.00769 6.04364 6.13399 6.20209 6.30251 6.34065 6.43476 6.52160 6.62449 6.66186 6.85119 7.08353 7.19495 7.41997 7.56900 8.30989 8.44141 8.98094 9.49404 11.00849 Molecular weight = 359.11amu Principal moments of inertia in cm(-1) A = 0.009904 B = 0.004884 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2826.577009 B = 5731.778330 C = 7426.766981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.203 3.797 3 H 0.169 0.831 4 N -1.123 6.123 5 S 2.789 3.211 6 O -0.996 6.996 7 O -0.976 6.976 8 N -0.991 5.991 9 C 0.107 3.893 10 C 0.209 3.791 11 C -0.560 4.560 12 H 0.097 0.903 13 C 0.088 3.912 14 N -0.864 5.864 15 Si 0.859 3.141 16 H -0.272 1.272 17 H -0.286 1.286 18 H -0.265 1.265 19 C 0.076 3.924 20 N -0.420 5.420 21 C 0.081 3.919 22 C -0.238 4.238 23 S 0.066 5.934 24 C -0.034 4.034 25 C -0.115 4.115 26 C -0.118 4.118 27 C -0.038 4.038 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.404 0.596 32 H 0.046 0.954 33 H 0.076 0.924 34 H 0.055 0.945 35 H 0.036 0.964 36 H 0.043 0.957 37 H 0.262 0.738 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.083 0.917 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.439 -12.431 4.322 13.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.093 3.907 3 H 0.185 0.815 4 N -0.880 5.880 5 S 2.797 3.203 6 O -0.980 6.980 7 O -0.959 6.959 8 N -0.833 5.833 9 C -0.040 4.040 10 C 0.085 3.915 11 C -0.598 4.598 12 H 0.115 0.885 13 C -0.118 4.118 14 N -0.500 5.500 15 Si 0.686 3.314 16 H -0.198 1.198 17 H -0.212 1.212 18 H -0.190 1.190 19 C -0.206 4.206 20 N -0.131 5.131 21 C -0.051 4.051 22 C -0.359 4.359 23 S 0.323 5.677 24 C -0.074 4.074 25 C -0.154 4.154 26 C -0.156 4.156 27 C -0.078 4.078 28 H 0.090 0.910 29 H 0.100 0.900 30 H 0.072 0.928 31 H 0.236 0.764 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.101 0.899 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.223 -12.401 2.990 12.815 hybrid contribution 0.525 0.850 0.796 1.277 sum -0.698 -11.551 3.785 12.175 Atomic orbital electron populations 1.22298 0.93867 1.02022 1.03963 1.19955 0.93940 0.99401 0.77417 0.81472 1.56250 1.82474 1.18711 1.30579 1.01712 0.73455 0.72519 0.72662 1.93559 1.81975 1.63663 1.58830 1.93576 1.52476 1.65750 1.84102 1.57389 1.18328 1.27440 1.80103 1.21241 0.83700 0.98084 1.00938 1.19703 0.97835 0.78357 0.95601 1.21544 1.51848 0.97589 0.88850 0.88489 1.24812 0.94167 0.98246 0.94615 1.69956 1.47199 1.27999 1.04799 0.87122 0.79400 0.84478 0.80372 1.19787 1.21213 1.18993 1.27023 1.02032 0.92358 0.99211 1.65910 1.09899 1.37748 0.99532 1.20993 1.00237 0.87691 0.96195 1.25877 1.11635 0.99015 0.99328 1.83519 1.59103 1.11787 1.13288 1.20070 0.99515 0.93905 0.93941 1.21607 0.98887 0.97290 0.97651 1.21589 1.01481 0.94707 0.97832 1.20340 1.01083 0.97981 0.88420 0.91038 0.90032 0.92828 0.76390 0.93581 0.90535 0.92662 0.94564 0.93929 0.92795 0.90849 0.90637 0.91362 0.91239 0.91034 0.91711 0.89865 0.89445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 9.50 37.16 0.35 -2.31 16 2 C 0.20 3.81 3.02 -69.09 -0.21 3.60 16 3 H 0.17 3.74 4.21 -51.93 -0.22 3.52 16 4 N -1.12 -19.31 5.52 -5.89 -0.03 -19.34 16 5 S 2.79 53.98 6.01 -107.50 -0.65 53.33 16 6 O -1.00 -19.91 17.21 -57.17 -0.98 -20.90 16 7 O -0.98 -21.10 15.96 -57.17 -0.91 -22.01 16 8 N -0.99 -19.81 3.23 -123.05 -0.40 -20.20 16 9 C 0.11 1.81 10.31 59.85 0.62 2.43 16 10 C 0.21 4.73 4.35 -5.19 -0.02 4.71 16 11 C -0.56 -14.14 7.45 -34.44 -0.26 -14.40 16 12 H 0.10 2.60 7.10 -52.49 -0.37 2.22 16 13 C 0.09 2.31 5.47 -17.82 -0.10 2.21 16 14 N -0.86 -23.89 13.96 55.43 0.77 -23.12 16 15 Si 0.86 20.16 27.47 -169.99 -4.67 15.49 16 16 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 19 C 0.08 1.40 6.27 -13.60 -0.09 1.31 16 20 N -0.42 -8.57 10.47 -7.32 -0.08 -8.65 16 21 C 0.08 1.40 6.78 -82.87 -0.56 0.84 16 22 C -0.24 -3.50 6.39 -35.45 -0.23 -3.72 16 23 S 0.07 0.97 22.33 -107.50 -2.40 -1.43 16 24 C -0.03 -0.37 6.28 -27.59 -0.17 -0.55 16 25 C -0.12 -1.12 5.95 -26.51 -0.16 -1.28 16 26 C -0.12 -1.27 5.87 -26.62 -0.16 -1.42 16 27 C -0.04 -0.57 6.29 -27.14 -0.17 -0.74 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.08 1.37 7.64 -51.93 -0.40 0.97 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.40 5.96 8.06 -34.47 -0.28 5.68 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.08 1.30 8.07 -51.93 -0.42 0.89 16 34 H 0.05 0.85 7.79 -51.93 -0.40 0.44 16 35 H 0.04 0.81 7.17 -51.93 -0.37 0.44 16 36 H 0.04 1.00 6.34 -51.93 -0.33 0.67 16 37 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.70 8.11 -51.93 -0.42 0.28 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 44 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 45 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 LS Contribution 381.01 15.07 5.74 5.74 Total: -1.00 -31.00 381.01 -11.35 -42.36 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -6.60 Total: 8.05 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -1.15 Total: -9.31 kcal Atomic # 7 Polarization: -71.58 SS G_CDS: 0.27 Total: -71.31 kcal Atomic # 8 Polarization: -41.02 SS G_CDS: -1.90 Total: -42.91 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.67 Total: 15.49 kcal Atomic # 16 Polarization: 54.94 SS G_CDS: -3.05 Total: 51.90 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.00 -11.35 -42.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071914102.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.598 kcal (2) G-P(sol) polarization free energy of solvation -31.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds