Wall clock time and date at job start Tue Mar 31 2020 04:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08993 * 109.47413 * 2 1 4 4 N 1.46502 * 109.46966 * 120.00298 * 2 1 3 5 5 S 1.65601 * 119.99867 * 245.43991 * 4 2 1 6 6 O 1.42095 * 106.40182 * 47.58224 * 5 4 2 7 7 O 1.42101 * 106.39709 * 180.49822 * 5 4 2 8 8 N 1.65596 * 107.21889 * 294.03968 * 5 4 2 9 9 C 1.46497 * 119.99850 * 90.90672 * 8 5 4 10 10 C 1.46500 * 120.00223 * 270.90076 * 8 5 4 11 11 C 1.50693 * 109.46941 * 94.69376 * 10 8 5 12 12 H 1.07994 * 120.00539 * 4.25466 * 11 10 8 13 13 C 1.37882 * 120.00033 * 184.25726 * 11 10 8 14 14 N 1.31519 * 120.00112 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00209 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47160 * 90.00069 * 15 13 11 17 17 H 1.48501 * 109.47277 * 209.99707 * 15 13 11 18 18 H 1.48502 * 109.47082 * 330.00107 * 15 13 11 19 19 C 1.50701 * 109.47095 * 240.00055 * 2 1 3 20 20 N 1.28667 * 124.93359 * 285.30837 * 19 2 1 21 21 C 1.32523 * 117.87787 * 180.21754 * 20 19 2 22 22 C 1.34610 * 113.16045 * 359.52320 * 21 20 19 23 23 S 1.70913 * 124.92643 * 105.00202 * 19 2 1 24 24 C 1.50991 * 125.22561 * 180.20834 * 22 21 20 25 25 C 1.53278 * 108.58930 * 343.97121 * 24 22 21 26 26 C 1.53151 * 108.99764 * 49.24443 * 25 24 22 27 27 C 1.52136 * 124.19595 * 179.78782 * 21 20 19 28 28 H 1.08996 * 109.47621 * 175.58881 * 1 2 3 29 29 H 1.09004 * 109.47401 * 295.59104 * 1 2 3 30 30 H 1.09002 * 109.47236 * 55.58975 * 1 2 3 31 31 H 0.96999 * 120.00029 * 65.44503 * 4 2 1 32 32 H 1.09000 * 109.47722 * 89.99630 * 9 8 5 33 33 H 1.09001 * 109.46943 * 209.99755 * 9 8 5 34 34 H 1.08997 * 109.47162 * 329.99369 * 9 8 5 35 35 H 1.09000 * 109.47497 * 214.69492 * 10 8 5 36 36 H 1.09006 * 109.47218 * 334.69462 * 10 8 5 37 37 H 0.96994 * 120.00449 * 180.02562 * 14 13 11 38 38 H 1.08999 * 109.62326 * 224.24204 * 24 22 21 39 39 H 1.09004 * 109.76916 * 103.79193 * 24 22 21 40 40 H 1.09001 * 109.54909 * 289.39170 * 25 24 22 41 41 H 1.09002 * 109.63199 * 169.14640 * 25 24 22 42 42 H 1.09002 * 109.47625 * 169.62357 * 26 25 24 43 43 H 1.09000 * 109.47543 * 49.60430 * 26 25 24 44 44 H 1.09000 * 109.59541 * 281.91976 * 27 21 20 45 45 H 1.09001 * 109.59282 * 42.22817 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6907 1.1962 5 16 2.8562 0.1479 2.3524 6 8 2.1111 1.3302 2.6096 7 8 3.1958 -0.7920 3.3626 8 7 4.2833 0.6343 1.6674 9 6 4.3692 1.9354 0.9995 10 6 5.4599 -0.2363 1.7294 11 6 5.5434 -1.0583 0.4692 12 1 4.8355 -0.8953 -0.3298 13 6 6.5238 -2.0187 0.3363 14 7 7.3863 -2.2170 1.3091 15 14 6.6270 -3.0382 -1.2256 16 1 7.5108 -2.3558 -2.2046 17 1 7.1830 -4.3777 -0.9066 18 1 5.2692 -3.1914 -1.8073 19 6 2.0323 -0.7104 -1.2305 20 7 2.0153 -1.9852 -1.4038 21 6 2.4982 -2.4624 -2.5419 22 6 2.9389 -1.5008 -3.3745 23 16 2.7004 0.0610 -2.6015 24 6 3.5361 -1.7384 -4.7408 25 6 3.9249 -3.2167 -4.8538 26 6 2.7410 -4.0792 -4.4067 27 6 2.5527 -3.9414 -2.8943 28 1 -0.3634 -1.0245 -0.0790 29 1 -0.3634 0.4439 0.9269 30 1 -0.3634 0.5808 -0.8478 31 1 1.8508 -1.6392 1.3108 32 1 4.6674 2.6956 1.7215 33 1 5.1075 1.8849 0.1992 34 1 3.3966 2.1937 0.5808 35 1 6.3583 0.3733 1.8259 36 1 5.3764 -0.8992 2.5908 37 1 8.0762 -2.8924 1.2155 38 1 4.4223 -1.1163 -4.8661 39 1 2.8046 -1.4925 -5.5107 40 1 4.7846 -3.4176 -4.2144 41 1 4.1769 -3.4511 -5.8881 42 1 2.9371 -5.1223 -4.6550 43 1 1.8367 -3.7478 -4.9172 44 1 3.3904 -4.4097 -2.3775 45 1 1.6222 -4.4232 -2.5940 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071914103.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:38 Heat of formation + Delta-G solvation = -48.901541 kcal Electronic energy + Delta-G solvation = -29872.871467 eV Core-core repulsion = 25950.208650 eV Total energy + Delta-G solvation = -3922.662817 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 359.112 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.02635 -37.21621 -36.59531 -35.51647 -35.23547 -35.17792 -32.47189 -30.87835 -30.14143 -28.69977 -27.80049 -25.15694 -25.07379 -23.62932 -22.42048 -22.25874 -20.67442 -19.23237 -18.10494 -18.03297 -17.17759 -16.73634 -16.33368 -16.03512 -15.31245 -15.06154 -14.64889 -14.44836 -14.34776 -13.96558 -13.80359 -13.49180 -13.38926 -13.27148 -12.95207 -12.82302 -12.42886 -12.27367 -12.19024 -11.87585 -11.76093 -11.64996 -11.52780 -11.51073 -11.22966 -11.18381 -11.15804 -10.97245 -10.88909 -10.62724 -10.52040 -10.45593 -10.10377 -9.76994 -9.62947 -9.09932 -8.92043 -8.47783 -8.33382 -8.04650 -6.09087 -4.14511 0.90484 1.26759 1.56690 1.95261 3.01143 3.22734 3.29718 3.33890 3.51736 3.98767 4.22503 4.37955 4.68263 4.71617 4.80136 4.84266 4.95216 5.03756 5.15652 5.17179 5.25699 5.42419 5.45972 5.49963 5.55224 5.60342 5.72046 5.78316 5.84018 5.88719 5.96802 6.01832 6.06059 6.12989 6.20240 6.24429 6.30510 6.46880 6.52845 7.21638 7.39405 7.46635 7.65083 7.87767 8.03675 8.16701 8.90048 9.51425 10.98894 Molecular weight = 359.11amu Principal moments of inertia in cm(-1) A = 0.009799 B = 0.005821 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2856.668273 B = 4809.308363 C = 6493.602890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.242 3.758 3 H 0.099 0.901 4 N -1.107 6.107 5 S 2.785 3.215 6 O -0.999 6.999 7 O -0.974 6.974 8 N -0.996 5.996 9 C 0.103 3.897 10 C 0.245 3.755 11 C -0.531 4.531 12 H 0.061 0.939 13 C 0.066 3.934 14 N -0.890 5.890 15 Si 0.880 3.120 16 H -0.282 1.282 17 H -0.287 1.287 18 H -0.261 1.261 19 C 0.053 3.947 20 N -0.453 5.453 21 C 0.078 3.922 22 C -0.227 4.227 23 S 0.114 5.886 24 C -0.038 4.038 25 C -0.120 4.120 26 C -0.116 4.116 27 C -0.042 4.042 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.422 0.578 32 H 0.047 0.953 33 H 0.074 0.926 34 H 0.049 0.951 35 H 0.036 0.964 36 H 0.053 0.947 37 H 0.263 0.737 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.083 0.917 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.209 2.584 -12.374 16.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.129 3.871 3 H 0.117 0.883 4 N -0.865 5.865 5 S 2.792 3.208 6 O -0.982 6.982 7 O -0.958 6.958 8 N -0.839 5.839 9 C -0.043 4.043 10 C 0.123 3.877 11 C -0.570 4.570 12 H 0.080 0.920 13 C -0.137 4.137 14 N -0.529 5.529 15 Si 0.708 3.292 16 H -0.208 1.208 17 H -0.213 1.213 18 H -0.185 1.185 19 C -0.229 4.229 20 N -0.166 5.166 21 C -0.053 4.053 22 C -0.348 4.348 23 S 0.372 5.628 24 C -0.077 4.077 25 C -0.159 4.159 26 C -0.154 4.154 27 C -0.082 4.082 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.256 0.744 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.067 0.933 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.102 0.898 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.319 3.618 -11.246 16.361 hybrid contribution 0.602 -1.989 -1.385 2.497 sum -10.717 1.629 -12.631 16.644 Atomic orbital electron populations 1.22181 0.92883 1.03470 1.03007 1.19053 0.94905 0.93603 0.79520 0.88317 1.56065 1.72587 1.23301 1.34537 1.01810 0.72622 0.72916 0.73442 1.93550 1.71604 1.48668 1.84379 1.93600 1.83488 1.63406 1.55329 1.57635 1.27663 1.26034 1.72567 1.21283 1.01259 0.84163 0.97624 1.19223 0.81713 0.88501 0.98214 1.21502 1.14656 1.18701 1.02156 0.92050 1.24906 0.95583 0.96837 0.96353 1.69930 1.17287 1.33820 1.31865 0.86750 0.78869 0.79776 0.83812 1.20850 1.21304 1.18511 1.26948 1.02915 0.92663 1.00327 1.65553 1.18117 1.12105 1.20796 1.20720 0.99100 0.97159 0.88370 1.25855 1.10993 0.94591 1.03353 1.83613 1.57784 1.10042 1.11380 1.20106 0.99840 0.97529 0.90265 1.21653 0.98856 0.93719 1.01694 1.21545 0.98642 1.00135 0.95067 1.20389 1.03220 0.88736 0.95868 0.91186 0.90582 0.91480 0.74393 0.93421 0.90695 0.93266 0.94613 0.92903 0.92730 0.90450 0.90381 0.91216 0.90952 0.90986 0.91589 0.89825 0.90048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.50 37.15 0.35 -1.51 16 2 C 0.24 3.62 3.39 -69.08 -0.23 3.39 16 3 H 0.10 1.38 6.18 -51.93 -0.32 1.06 16 4 N -1.11 -19.21 5.40 -5.89 -0.03 -19.24 16 5 S 2.78 55.98 5.97 -107.50 -0.64 55.34 16 6 O -1.00 -20.00 16.79 -57.17 -0.96 -20.96 16 7 O -0.97 -23.13 16.71 -57.17 -0.96 -24.09 16 8 N -1.00 -20.68 3.22 -123.06 -0.40 -21.07 16 9 C 0.10 1.75 10.31 59.85 0.62 2.36 16 10 C 0.25 6.16 5.41 -5.20 -0.03 6.13 16 11 C -0.53 -14.03 9.38 -34.44 -0.32 -14.35 16 12 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 13 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 14 N -0.89 -25.93 13.29 55.43 0.74 -25.19 16 15 Si 0.88 20.92 29.54 -169.99 -5.02 15.90 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 18 H -0.26 -5.95 6.77 56.52 0.38 -5.56 16 19 C 0.05 0.85 6.24 -13.60 -0.08 0.76 16 20 N -0.45 -7.92 10.46 -7.32 -0.08 -7.99 16 21 C 0.08 1.28 6.78 -82.87 -0.56 0.72 16 22 C -0.23 -3.42 6.39 -35.45 -0.23 -3.65 16 23 S 0.11 1.66 23.17 -107.50 -2.49 -0.83 16 24 C -0.04 -0.45 6.28 -27.60 -0.17 -0.62 16 25 C -0.12 -1.36 5.95 -26.51 -0.16 -1.52 16 26 C -0.12 -1.25 5.87 -26.64 -0.16 -1.40 16 27 C -0.04 -0.59 6.29 -27.16 -0.17 -0.76 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.42 7.21 8.95 -34.47 -0.31 6.90 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16 34 H 0.05 0.71 6.22 -51.93 -0.32 0.39 16 35 H 0.04 0.92 8.11 -51.93 -0.42 0.50 16 36 H 0.05 1.48 6.93 -51.93 -0.36 1.12 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.95 8.11 -51.93 -0.42 0.53 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 44 H 0.08 1.30 7.81 -51.93 -0.41 0.90 16 45 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 390.67 15.07 5.89 5.89 Total: -1.00 -33.44 390.67 -11.96 -45.40 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -6.77 Total: 5.57 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -1.24 Total: -8.72 kcal Atomic # 7 Polarization: -73.73 SS G_CDS: 0.23 Total: -73.50 kcal Atomic # 8 Polarization: -43.13 SS G_CDS: -1.92 Total: -45.05 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 57.64 SS G_CDS: -3.13 Total: 54.51 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.44 -11.96 -45.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071914103.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.499 kcal (2) G-P(sol) polarization free energy of solvation -33.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds