Wall clock time and date at job start Tue Mar 31 2020 04:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08993 * 109.47413 * 2 1 4 4 N 1.46502 * 109.46966 * 120.00298 * 2 1 3 5 5 S 1.65601 * 119.99867 * 245.43991 * 4 2 1 6 6 O 1.42095 * 106.40182 * 47.58224 * 5 4 2 7 7 O 1.42101 * 106.39709 * 180.49822 * 5 4 2 8 8 N 1.65596 * 107.21889 * 294.03968 * 5 4 2 9 9 C 1.46497 * 119.99850 * 90.90672 * 8 5 4 10 10 C 1.46500 * 120.00223 * 270.90076 * 8 5 4 11 11 C 1.50693 * 109.46941 * 94.69376 * 10 8 5 12 12 H 1.07994 * 120.00539 * 4.25466 * 11 10 8 13 13 C 1.37882 * 120.00033 * 184.25726 * 11 10 8 14 14 N 1.31519 * 120.00112 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00209 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47160 * 90.00069 * 15 13 11 17 17 H 1.48501 * 109.47277 * 209.99707 * 15 13 11 18 18 H 1.48502 * 109.47082 * 330.00107 * 15 13 11 19 19 C 1.50701 * 109.47095 * 240.00055 * 2 1 3 20 20 N 1.28667 * 124.93359 * 285.30837 * 19 2 1 21 21 C 1.32523 * 117.87787 * 180.21754 * 20 19 2 22 22 C 1.34610 * 113.16045 * 359.52320 * 21 20 19 23 23 S 1.70913 * 124.92643 * 105.00202 * 19 2 1 24 24 C 1.50991 * 125.22561 * 180.20834 * 22 21 20 25 25 C 1.53278 * 108.58930 * 343.97121 * 24 22 21 26 26 C 1.53151 * 108.99764 * 49.24443 * 25 24 22 27 27 C 1.52136 * 124.19595 * 179.78782 * 21 20 19 28 28 H 1.08996 * 109.47621 * 175.58881 * 1 2 3 29 29 H 1.09004 * 109.47401 * 295.59104 * 1 2 3 30 30 H 1.09002 * 109.47236 * 55.58975 * 1 2 3 31 31 H 0.96999 * 120.00029 * 65.44503 * 4 2 1 32 32 H 1.09000 * 109.47722 * 89.99630 * 9 8 5 33 33 H 1.09001 * 109.46943 * 209.99755 * 9 8 5 34 34 H 1.08997 * 109.47162 * 329.99369 * 9 8 5 35 35 H 1.09000 * 109.47497 * 214.69492 * 10 8 5 36 36 H 1.09006 * 109.47218 * 334.69462 * 10 8 5 37 37 H 0.96994 * 120.00449 * 180.02562 * 14 13 11 38 38 H 1.08999 * 109.62326 * 224.24204 * 24 22 21 39 39 H 1.09004 * 109.76916 * 103.79193 * 24 22 21 40 40 H 1.09001 * 109.54909 * 289.39170 * 25 24 22 41 41 H 1.09002 * 109.63199 * 169.14640 * 25 24 22 42 42 H 1.09002 * 109.47625 * 169.62357 * 26 25 24 43 43 H 1.09000 * 109.47543 * 49.60430 * 26 25 24 44 44 H 1.09000 * 109.59541 * 281.91976 * 27 21 20 45 45 H 1.09001 * 109.59282 * 42.22817 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6907 1.1962 5 16 2.8562 0.1479 2.3524 6 8 2.1111 1.3302 2.6096 7 8 3.1958 -0.7920 3.3626 8 7 4.2833 0.6343 1.6674 9 6 4.3692 1.9354 0.9995 10 6 5.4599 -0.2363 1.7294 11 6 5.5434 -1.0583 0.4692 12 1 4.8355 -0.8953 -0.3298 13 6 6.5238 -2.0187 0.3363 14 7 7.3863 -2.2170 1.3091 15 14 6.6270 -3.0382 -1.2256 16 1 7.5108 -2.3558 -2.2046 17 1 7.1830 -4.3777 -0.9066 18 1 5.2692 -3.1914 -1.8073 19 6 2.0323 -0.7104 -1.2305 20 7 2.0153 -1.9852 -1.4038 21 6 2.4982 -2.4624 -2.5419 22 6 2.9389 -1.5008 -3.3745 23 16 2.7004 0.0610 -2.6015 24 6 3.5361 -1.7384 -4.7408 25 6 3.9249 -3.2167 -4.8538 26 6 2.7410 -4.0792 -4.4067 27 6 2.5527 -3.9414 -2.8943 28 1 -0.3634 -1.0245 -0.0790 29 1 -0.3634 0.4439 0.9269 30 1 -0.3634 0.5808 -0.8478 31 1 1.8508 -1.6392 1.3108 32 1 4.6674 2.6956 1.7215 33 1 5.1075 1.8849 0.1992 34 1 3.3966 2.1937 0.5808 35 1 6.3583 0.3733 1.8259 36 1 5.3764 -0.8992 2.5908 37 1 8.0762 -2.8924 1.2155 38 1 4.4223 -1.1163 -4.8661 39 1 2.8046 -1.4925 -5.5107 40 1 4.7846 -3.4176 -4.2144 41 1 4.1769 -3.4511 -5.8881 42 1 2.9371 -5.1223 -4.6550 43 1 1.8367 -3.7478 -4.9172 44 1 3.3904 -4.4097 -2.3775 45 1 1.6222 -4.4232 -2.5940 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071914103.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:37 Heat of formation + Delta-G solvation = -72.545019 kcal Electronic energy + Delta-G solvation = -29873.896725 eV Core-core repulsion = 25950.208650 eV Total energy + Delta-G solvation = -3923.688075 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 359.112 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.15001 -38.52054 -38.07287 -37.24277 -36.94860 -36.33295 -34.51600 -31.83943 -31.36593 -29.76240 -29.66783 -26.81133 -26.22631 -24.61126 -24.23335 -23.42154 -21.75471 -20.68129 -19.38624 -19.20554 -18.74741 -18.51079 -18.18459 -17.44865 -16.80351 -16.31784 -16.15988 -15.71346 -15.48509 -15.17869 -15.00674 -14.94358 -14.78089 -14.55108 -14.07437 -14.01687 -13.97109 -13.75919 -13.50706 -13.37483 -13.23723 -13.07042 -12.97173 -12.89129 -12.73377 -12.65430 -12.61093 -12.44020 -12.34495 -12.00184 -11.83100 -11.77620 -11.64116 -11.41284 -10.96561 -10.60931 -10.33262 -10.05743 -9.81854 -9.44359 -8.20532 -6.32172 -0.40626 -0.17218 0.42634 0.79186 1.31462 1.34637 1.45910 1.78464 2.00748 2.37599 2.54161 2.97637 3.11693 3.38522 3.55610 3.78249 3.82930 3.93342 4.01422 4.06420 4.11123 4.22851 4.40170 4.52672 4.56127 4.60858 4.66793 4.78854 4.79976 4.84412 4.92690 4.99570 5.03127 5.05006 5.10365 5.19278 5.24168 5.26003 5.36195 5.40174 5.44060 5.70075 5.82160 6.04956 6.07096 6.79357 6.87661 7.37455 8.87239 Molecular weight = 359.11amu Principal moments of inertia in cm(-1) A = 0.009799 B = 0.005821 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2856.668273 B = 4809.308363 C = 6493.602890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.232 3.768 3 H 0.110 0.890 4 N -1.103 6.103 5 S 2.800 3.200 6 O -0.995 6.995 7 O -1.016 7.016 8 N -1.002 6.002 9 C 0.092 3.908 10 C 0.260 3.740 11 C -0.526 4.526 12 H 0.067 0.933 13 C 0.013 3.987 14 N -0.928 5.928 15 Si 0.939 3.061 16 H -0.273 1.273 17 H -0.292 1.292 18 H -0.250 1.250 19 C 0.032 3.968 20 N -0.478 5.478 21 C 0.047 3.953 22 C -0.231 4.231 23 S 0.140 5.860 24 C -0.041 4.041 25 C -0.121 4.121 26 C -0.109 4.109 27 C -0.045 4.045 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.422 0.578 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.023 0.977 36 H 0.018 0.982 37 H 0.263 0.737 38 H 0.079 0.921 39 H 0.107 0.893 40 H 0.042 0.958 41 H 0.103 0.897 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.059 0.941 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.504 3.272 -15.389 20.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.121 3.879 3 H 0.127 0.873 4 N -0.863 5.863 5 S 2.807 3.193 6 O -0.979 6.979 7 O -1.000 7.000 8 N -0.844 5.844 9 C -0.053 4.053 10 C 0.137 3.863 11 C -0.565 4.565 12 H 0.085 0.915 13 C -0.186 4.186 14 N -0.568 5.568 15 Si 0.765 3.235 16 H -0.199 1.199 17 H -0.218 1.218 18 H -0.174 1.174 19 C -0.248 4.248 20 N -0.192 5.192 21 C -0.084 4.084 22 C -0.352 4.352 23 S 0.398 5.602 24 C -0.081 4.081 25 C -0.160 4.160 26 C -0.147 4.147 27 C -0.085 4.085 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.257 0.743 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.041 0.959 36 H 0.036 0.964 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.125 0.875 40 H 0.060 0.940 41 H 0.122 0.878 42 H 0.109 0.891 43 H 0.100 0.900 44 H 0.077 0.923 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.633 4.343 -14.274 19.550 hybrid contribution 0.957 -2.131 -0.459 2.381 sum -11.676 2.212 -14.733 18.928 Atomic orbital electron populations 1.22160 0.90534 1.03877 1.04349 1.19431 0.96801 0.93575 0.78117 0.87258 1.55842 1.71959 1.23293 1.35180 1.01213 0.72405 0.72475 0.73158 1.93546 1.71247 1.48538 1.84529 1.93542 1.84173 1.64673 1.57646 1.57525 1.26616 1.27019 1.73246 1.21576 1.03100 0.82594 0.98018 1.18751 0.82841 0.88305 0.96447 1.21731 1.14088 1.18303 1.02387 0.91469 1.25700 0.95506 0.98191 0.99198 1.70056 1.18175 1.34746 1.33866 0.85826 0.79355 0.77934 0.80430 1.19892 1.21779 1.17416 1.27110 1.03614 0.92797 1.01299 1.65567 1.18893 1.12936 1.21768 1.21155 1.00191 0.98504 0.88576 1.26392 1.09835 0.94477 1.04495 1.83421 1.56950 1.09562 1.10291 1.20316 1.00500 0.98063 0.89191 1.21698 0.97929 0.93405 1.02969 1.21546 0.99156 1.01344 0.92620 1.20484 1.02499 0.87446 0.98081 0.91491 0.90106 0.88988 0.74340 0.91912 0.90565 0.90439 0.95861 0.96444 0.92811 0.90231 0.87520 0.93954 0.87818 0.89107 0.90010 0.92268 0.89448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 9.50 71.98 0.68 -2.58 16 2 C 0.23 6.59 3.39 44.24 0.15 6.73 16 3 H 0.11 2.80 6.18 -2.39 -0.01 2.79 16 4 N -1.10 -37.79 5.40 -172.53 -0.93 -38.72 16 5 S 2.80 112.29 5.97 -56.49 -0.34 111.95 16 6 O -1.00 -38.56 16.79 -128.00 -2.15 -40.71 16 7 O -1.02 -49.61 16.71 -128.00 -2.14 -51.75 16 8 N -1.00 -41.43 3.22 -543.24 -1.75 -43.18 16 9 C 0.09 2.98 10.31 127.77 1.32 4.29 16 10 C 0.26 13.37 5.41 85.63 0.46 13.84 16 11 C -0.53 -28.00 9.38 25.60 0.24 -27.76 16 12 H 0.07 3.44 7.81 -2.91 -0.02 3.42 16 13 C 0.01 0.73 5.46 84.66 0.46 1.20 16 14 N -0.93 -55.30 13.29 21.45 0.28 -55.01 16 15 Si 0.94 43.41 29.54 68.60 2.03 45.44 16 16 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 17 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 18 H -0.25 -11.05 6.77 99.48 0.67 -10.38 16 19 C 0.03 0.99 6.24 88.57 0.55 1.55 16 20 N -0.48 -16.31 10.46 -177.08 -1.85 -18.16 16 21 C 0.05 1.48 6.78 42.08 0.29 1.76 16 22 C -0.23 -6.45 6.39 24.95 0.16 -6.29 16 23 S 0.14 3.76 23.17 -56.49 -1.31 2.45 16 24 C -0.04 -0.85 6.28 30.03 0.19 -0.66 16 25 C -0.12 -2.37 5.95 30.74 0.18 -2.19 16 26 C -0.11 -2.03 5.87 30.65 0.18 -1.85 16 27 C -0.05 -1.21 6.29 30.32 0.19 -1.02 16 28 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.42 14.58 8.95 -96.75 -0.87 13.71 16 32 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.08 2.43 8.07 -2.39 -0.02 2.41 16 34 H 0.08 2.04 6.22 -2.39 -0.01 2.02 16 35 H 0.02 1.24 8.11 -2.39 -0.02 1.22 16 36 H 0.02 1.02 6.93 -2.38 -0.02 1.01 16 37 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 38 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.04 1.06 8.11 -2.39 -0.02 1.04 16 41 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.08 1.29 8.10 -2.39 -0.02 1.27 16 44 H 0.06 1.83 7.81 -2.39 -0.02 1.81 16 45 H 0.09 2.12 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -73.09 390.67 -2.99 -76.08 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: 0.11 Total: 24.61 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: 5.06 Total: -12.98 kcal Atomic # 7 Polarization: -150.82 SS G_CDS: -4.25 Total: -155.07 kcal Atomic # 8 Polarization: -88.17 SS G_CDS: -4.29 Total: -92.46 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: 116.04 SS G_CDS: -1.65 Total: 114.40 kcal Total: -73.09 -2.99 -76.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071914103.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.532 kcal (2) G-P(sol) polarization free energy of solvation -73.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds