Wall clock time and date at job start Tue Mar 31 2020 05:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46891 * 109.47487 * 2 1 4 4 C 1.46902 * 110.99994 * 293.95820 * 3 2 1 5 5 C 1.39839 * 111.00407 * 169.99715 * 3 2 1 6 6 C 1.38830 * 120.07806 * 59.72582 * 5 3 2 7 7 C 1.38155 * 119.95122 * 179.77125 * 6 5 3 8 8 C 1.38270 * 120.10889 * 0.48170 * 7 6 5 9 9 C 1.50697 * 119.92139 * 179.76629 * 8 7 6 10 10 N 1.46499 * 109.47545 * 270.02740 * 9 8 7 11 11 S 1.65603 * 120.00110 * 164.44006 * 10 9 8 12 12 O 1.42103 * 106.39929 * 176.31185 * 11 10 9 13 13 O 1.42101 * 106.40071 * 309.23020 * 11 10 9 14 14 N 1.65596 * 107.21910 * 62.76958 * 11 10 9 15 15 C 1.46501 * 120.00259 * 273.10694 * 14 11 10 16 16 C 1.46503 * 119.99702 * 93.10723 * 14 11 10 17 17 C 1.50709 * 109.46861 * 95.57019 * 16 14 11 18 18 H 1.07999 * 119.99844 * 4.71489 * 17 16 14 19 19 C 1.37880 * 119.99584 * 184.71625 * 17 16 14 20 20 N 1.31512 * 120.00156 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99614 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47205 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47032 * 119.99724 * 21 19 17 24 24 H 1.48506 * 109.46631 * 239.99649 * 21 19 17 25 25 C 1.38290 * 120.16139 * 359.79117 * 8 7 6 26 26 C 1.38280 * 120.04876 * 359.95749 * 25 8 7 27 27 F 1.35104 * 120.05171 * 179.97438 * 26 25 8 28 28 H 1.09006 * 109.46913 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47104 * 299.99700 * 1 2 3 30 30 H 1.08999 * 109.47059 * 60.00233 * 1 2 3 31 31 H 1.09005 * 109.47049 * 239.99681 * 2 1 3 32 32 H 1.09005 * 109.47059 * 120.00489 * 2 1 3 33 33 H 1.08995 * 109.47455 * 59.99550 * 4 3 2 34 34 H 1.08999 * 109.46983 * 299.99455 * 4 3 2 35 35 H 1.09000 * 109.47129 * 179.97438 * 4 3 2 36 36 H 1.08003 * 120.02728 * 0.02562 * 6 5 3 37 37 H 1.07999 * 119.94451 * 180.25618 * 7 6 5 38 38 H 1.09003 * 109.46805 * 30.02621 * 9 8 7 39 39 H 1.09000 * 109.47242 * 150.02383 * 9 8 7 40 40 H 0.96999 * 119.99826 * 344.44014 * 10 9 8 41 41 H 1.09001 * 109.46965 * 90.00253 * 15 14 11 42 42 H 1.09000 * 109.46806 * 210.00066 * 15 14 11 43 43 H 1.08996 * 109.46892 * 330.00593 * 15 14 11 44 44 H 1.08997 * 109.47210 * 215.56570 * 16 14 11 45 45 H 1.08999 * 109.47352 * 335.57182 * 16 14 11 46 46 H 0.96995 * 119.99967 * 180.02562 * 20 19 17 47 47 H 1.07999 * 119.97453 * 179.97438 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.6703 2.0669 -1.2533 5 6 3.3990 1.4288 0.2268 6 6 4.2682 0.7862 -0.6445 7 6 5.6306 0.8353 -0.4206 8 6 6.1293 1.5150 0.6754 9 6 7.6158 1.5614 0.9185 10 7 8.0103 0.4228 1.7517 11 16 9.6055 -0.0071 1.8650 12 8 9.6678 -1.0746 2.8009 13 8 10.0882 -0.1125 0.5326 14 7 10.4087 1.2665 2.5540 15 6 10.9181 2.3527 1.7131 16 6 10.6100 1.3071 4.0046 17 6 11.9700 0.7504 4.3388 18 1 12.6492 0.4722 3.5465 19 6 12.3471 0.5963 5.6561 20 7 11.5202 0.9356 6.6208 21 14 14.0331 -0.0931 6.0703 22 1 14.7670 -0.3939 4.8149 23 1 14.7951 0.9053 6.8625 24 1 13.8772 -1.3393 6.8628 25 6 5.2674 2.1519 1.5493 26 6 3.9029 2.1114 1.3287 27 9 3.0607 2.7332 2.1827 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 0.5867 2.0793 -1.3702 34 1 2.1202 1.5371 -2.0929 35 1 2.0443 3.0903 -1.2265 36 1 3.8799 0.2518 -1.4989 37 1 6.3069 0.3389 -1.1007 38 1 8.1416 1.5131 -0.0352 39 1 7.8719 2.4904 1.4278 40 1 7.3370 -0.0792 2.2371 41 1 10.1545 3.1241 1.6141 42 1 11.8093 2.7804 2.1725 43 1 11.1695 1.9615 0.7273 44 1 10.5442 2.3382 4.3518 45 1 9.8420 0.7089 4.4949 46 1 11.7856 0.8275 7.5474 47 1 5.6602 2.6816 2.4046 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071921633.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:14 Heat of formation + Delta-G solvation = -83.892742 kcal Electronic energy + Delta-G solvation = -30110.260329 eV Core-core repulsion = 25755.700098 eV Total energy + Delta-G solvation = -4354.560231 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 359.147 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -48.91312 -40.21488 -37.84222 -36.62417 -35.52485 -35.18425 -34.86410 -32.44266 -31.70180 -30.90303 -29.72257 -27.78934 -26.97647 -25.13142 -24.91428 -23.37991 -22.32060 -22.22338 -20.92475 -19.02481 -17.86164 -17.33340 -16.98816 -16.89730 -16.60912 -16.29962 -16.02266 -15.84632 -15.27052 -15.16792 -14.95027 -14.48989 -14.34928 -14.19554 -13.73219 -13.61777 -13.36500 -13.28466 -12.99819 -12.83122 -12.46655 -12.34457 -12.23264 -12.16434 -12.11726 -12.06295 -11.73494 -11.62855 -11.46602 -11.33870 -11.16390 -11.11770 -11.08446 -10.70826 -10.52524 -10.05060 -9.76334 -9.42445 -9.24089 -8.98307 -8.84276 -8.45375 -8.08612 -6.07100 -4.11254 0.65515 0.90613 1.25512 3.12919 3.29927 3.30709 3.38466 3.43225 3.59430 3.98869 4.11640 4.37468 4.43546 4.45977 4.57485 4.68942 4.83635 4.93568 4.94624 5.02370 5.06554 5.07748 5.22782 5.24503 5.29122 5.34433 5.35580 5.49249 5.57890 5.61086 5.63721 5.78141 5.80442 5.88738 5.92637 5.97925 6.19733 6.26867 6.37881 6.45025 6.53982 6.93227 7.04079 7.24796 7.39348 7.60609 7.90390 8.19531 8.91570 9.54246 11.01575 Molecular weight = 359.15amu Principal moments of inertia in cm(-1) A = 0.019549 B = 0.002168 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.968763 B =12909.979360 C =13333.577860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 N -0.504 5.504 4 C 0.027 3.973 5 C 0.052 3.948 6 C -0.123 4.123 7 C -0.103 4.103 8 C -0.066 4.066 9 C 0.161 3.839 10 N -1.131 6.131 11 S 2.782 3.218 12 O -0.961 6.961 13 O -0.997 6.997 14 N -0.995 5.995 15 C 0.092 3.908 16 C 0.256 3.744 17 C -0.530 4.530 18 H 0.061 0.939 19 C 0.062 3.938 20 N -0.894 5.894 21 Si 0.897 3.103 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.282 1.282 25 C -0.133 4.133 26 C 0.124 3.876 27 F -0.127 7.127 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.039 0.961 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.032 0.968 35 H 0.070 0.930 36 H 0.129 0.871 37 H 0.134 0.866 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.414 0.586 41 H 0.039 0.961 42 H 0.078 0.922 43 H 0.066 0.934 44 H 0.033 0.967 45 H 0.043 0.957 46 H 0.263 0.737 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.098 3.576 -16.416 26.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.073 4.073 3 N -0.225 5.225 4 C -0.119 4.119 5 C -0.043 4.043 6 C -0.143 4.143 7 C -0.122 4.122 8 C -0.067 4.067 9 C 0.034 3.966 10 N -0.890 5.890 11 S 2.789 3.211 12 O -0.945 6.945 13 O -0.981 6.981 14 N -0.838 5.838 15 C -0.054 4.054 16 C 0.134 3.866 17 C -0.570 4.570 18 H 0.079 0.921 19 C -0.141 4.141 20 N -0.533 5.533 21 Si 0.725 3.275 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.208 1.208 25 C -0.153 4.153 26 C 0.103 3.897 27 F -0.105 7.105 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.050 0.950 35 H 0.089 0.911 36 H 0.147 0.853 37 H 0.152 0.848 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.247 0.753 41 H 0.057 0.943 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.051 0.949 45 H 0.061 0.939 46 H 0.073 0.927 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -19.867 3.147 -16.193 25.823 hybrid contribution 0.633 -0.486 0.248 0.836 sum -19.234 2.661 -15.945 25.125 Atomic orbital electron populations 1.21810 0.94272 1.01899 1.02695 1.22197 0.96353 0.87294 1.01408 1.59575 1.09642 1.17186 1.36133 1.22487 1.01933 0.99078 0.88451 1.18787 0.89466 1.00495 0.95587 1.21489 0.93639 0.99737 0.99408 1.21087 0.94985 0.98594 0.97568 1.19753 0.95325 0.97088 0.94553 1.20126 0.90806 0.89811 0.95824 1.56361 1.28158 1.43219 1.61252 1.01974 0.72468 0.73635 0.73006 1.93651 1.85436 1.52335 1.63071 1.93522 1.79452 1.86379 1.38728 1.57599 1.69302 1.38734 1.18160 1.21396 0.99841 0.89673 0.94515 1.19090 0.97557 0.98119 0.71869 1.21530 1.00524 1.42768 0.92176 0.92088 1.24945 0.97684 0.95242 0.96184 1.69923 1.35704 1.47980 0.99711 0.86456 0.83800 0.78775 0.78490 1.19644 1.20963 1.20786 1.21138 0.90894 1.01994 1.01262 1.17496 0.87219 0.96029 0.88939 1.91514 1.70756 1.79940 1.68324 0.91925 0.91589 0.92522 0.94229 0.90428 0.90456 0.94953 0.91114 0.85314 0.84805 0.89382 0.90538 0.75308 0.94289 0.90321 0.91567 0.94941 0.93907 0.92713 0.83781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.84 37.16 0.37 -0.54 16 2 C 0.05 0.40 5.26 -3.83 -0.02 0.38 16 3 N -0.50 -4.52 4.57 -178.87 -0.82 -5.34 16 4 C 0.03 0.19 9.06 60.07 0.54 0.73 16 5 C 0.05 0.51 4.68 -83.68 -0.39 0.12 16 6 C -0.12 -1.06 8.71 -39.39 -0.34 -1.40 16 7 C -0.10 -0.94 9.69 -39.60 -0.38 -1.32 16 8 C -0.07 -0.66 5.28 -104.59 -0.55 -1.21 16 9 C 0.16 1.78 6.38 -5.20 -0.03 1.75 16 10 N -1.13 -15.71 6.04 -11.66 -0.07 -15.78 16 11 S 2.78 52.83 6.09 -107.50 -0.65 52.18 16 12 O -0.96 -22.57 16.99 -57.17 -0.97 -23.55 16 13 O -1.00 -19.81 16.34 -57.17 -0.93 -20.74 16 14 N -0.99 -19.82 3.23 -123.05 -0.40 -20.22 16 15 C 0.09 1.49 10.69 59.85 0.64 2.13 16 16 C 0.26 6.29 5.10 -5.19 -0.03 6.26 16 17 C -0.53 -14.77 9.38 -34.43 -0.32 -15.10 16 18 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 21 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 22 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 C -0.13 -1.38 9.67 -39.55 -0.38 -1.76 16 26 C 0.12 1.38 7.31 -39.26 -0.29 1.09 16 27 F -0.13 -1.59 17.08 2.25 0.04 -1.55 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.30 6.55 -51.93 -0.34 -0.04 16 31 H 0.04 0.26 7.47 -51.93 -0.39 -0.12 16 32 H 0.08 0.65 8.06 -51.93 -0.42 0.23 16 33 H 0.08 0.44 6.47 -51.93 -0.34 0.11 16 34 H 0.03 0.20 7.49 -51.93 -0.39 -0.19 16 35 H 0.07 0.51 8.13 -51.93 -0.42 0.09 16 36 H 0.13 0.89 7.17 -52.48 -0.38 0.51 16 37 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 38 H 0.09 0.92 7.74 -51.93 -0.40 0.52 16 39 H 0.08 0.77 7.99 -51.93 -0.42 0.36 16 40 H 0.41 5.28 8.65 -34.47 -0.30 4.98 16 41 H 0.04 0.50 8.05 -51.93 -0.42 0.08 16 42 H 0.08 1.31 8.07 -51.93 -0.42 0.89 16 43 H 0.07 1.00 7.05 -51.93 -0.37 0.64 16 44 H 0.03 0.80 8.11 -51.93 -0.42 0.38 16 45 H 0.04 1.13 7.50 -51.93 -0.39 0.74 16 46 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 47 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 403.99 15.07 6.09 6.09 Total: -1.00 -34.33 403.99 -10.33 -44.66 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -7.03 Total: 0.04 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -1.29 Total: -7.23 kcal Atomic # 7 Polarization: -66.13 SS G_CDS: -0.55 Total: -66.68 kcal Atomic # 8 Polarization: -42.38 SS G_CDS: -1.91 Total: -44.29 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: 52.83 SS G_CDS: -0.65 Total: 52.18 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.33 -10.33 -44.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071921633.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.233 kcal (2) G-P(sol) polarization free energy of solvation -34.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds