Wall clock time and date at job start Tue Mar 31 2020 05:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46891 * 109.47487 * 2 1 4 4 C 1.46902 * 110.99994 * 293.95820 * 3 2 1 5 5 C 1.39839 * 111.00407 * 169.99715 * 3 2 1 6 6 C 1.38830 * 120.07806 * 59.72582 * 5 3 2 7 7 C 1.38155 * 119.95122 * 179.77125 * 6 5 3 8 8 C 1.38270 * 120.10889 * 0.48170 * 7 6 5 9 9 C 1.50697 * 119.92139 * 179.76629 * 8 7 6 10 10 N 1.46499 * 109.47545 * 270.02740 * 9 8 7 11 11 S 1.65603 * 120.00110 * 164.44006 * 10 9 8 12 12 O 1.42103 * 106.39929 * 176.31185 * 11 10 9 13 13 O 1.42101 * 106.40071 * 309.23020 * 11 10 9 14 14 N 1.65596 * 107.21910 * 62.76958 * 11 10 9 15 15 C 1.46501 * 120.00259 * 273.10694 * 14 11 10 16 16 C 1.46503 * 119.99702 * 93.10723 * 14 11 10 17 17 C 1.50709 * 109.46861 * 95.57019 * 16 14 11 18 18 H 1.07999 * 119.99844 * 4.71489 * 17 16 14 19 19 C 1.37880 * 119.99584 * 184.71625 * 17 16 14 20 20 N 1.31512 * 120.00156 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99614 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47205 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47032 * 119.99724 * 21 19 17 24 24 H 1.48506 * 109.46631 * 239.99649 * 21 19 17 25 25 C 1.38290 * 120.16139 * 359.79117 * 8 7 6 26 26 C 1.38280 * 120.04876 * 359.95749 * 25 8 7 27 27 F 1.35104 * 120.05171 * 179.97438 * 26 25 8 28 28 H 1.09006 * 109.46913 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47104 * 299.99700 * 1 2 3 30 30 H 1.08999 * 109.47059 * 60.00233 * 1 2 3 31 31 H 1.09005 * 109.47049 * 239.99681 * 2 1 3 32 32 H 1.09005 * 109.47059 * 120.00489 * 2 1 3 33 33 H 1.08995 * 109.47455 * 59.99550 * 4 3 2 34 34 H 1.08999 * 109.46983 * 299.99455 * 4 3 2 35 35 H 1.09000 * 109.47129 * 179.97438 * 4 3 2 36 36 H 1.08003 * 120.02728 * 0.02562 * 6 5 3 37 37 H 1.07999 * 119.94451 * 180.25618 * 7 6 5 38 38 H 1.09003 * 109.46805 * 30.02621 * 9 8 7 39 39 H 1.09000 * 109.47242 * 150.02383 * 9 8 7 40 40 H 0.96999 * 119.99826 * 344.44014 * 10 9 8 41 41 H 1.09001 * 109.46965 * 90.00253 * 15 14 11 42 42 H 1.09000 * 109.46806 * 210.00066 * 15 14 11 43 43 H 1.08996 * 109.46892 * 330.00593 * 15 14 11 44 44 H 1.08997 * 109.47210 * 215.56570 * 16 14 11 45 45 H 1.08999 * 109.47352 * 335.57182 * 16 14 11 46 46 H 0.96995 * 119.99967 * 180.02562 * 20 19 17 47 47 H 1.07999 * 119.97453 * 179.97438 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.6703 2.0669 -1.2533 5 6 3.3990 1.4288 0.2268 6 6 4.2682 0.7862 -0.6445 7 6 5.6306 0.8353 -0.4206 8 6 6.1293 1.5150 0.6754 9 6 7.6158 1.5614 0.9185 10 7 8.0103 0.4228 1.7517 11 16 9.6055 -0.0071 1.8650 12 8 9.6678 -1.0746 2.8009 13 8 10.0882 -0.1125 0.5326 14 7 10.4087 1.2665 2.5540 15 6 10.9181 2.3527 1.7131 16 6 10.6100 1.3071 4.0046 17 6 11.9700 0.7504 4.3388 18 1 12.6492 0.4722 3.5465 19 6 12.3471 0.5963 5.6561 20 7 11.5202 0.9356 6.6208 21 14 14.0331 -0.0931 6.0703 22 1 14.7670 -0.3939 4.8149 23 1 14.7951 0.9053 6.8625 24 1 13.8772 -1.3393 6.8628 25 6 5.2674 2.1519 1.5493 26 6 3.9029 2.1114 1.3287 27 9 3.0607 2.7332 2.1827 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 0.5867 2.0793 -1.3702 34 1 2.1202 1.5371 -2.0929 35 1 2.0443 3.0903 -1.2265 36 1 3.8799 0.2518 -1.4989 37 1 6.3069 0.3389 -1.1007 38 1 8.1416 1.5131 -0.0352 39 1 7.8719 2.4904 1.4278 40 1 7.3370 -0.0792 2.2371 41 1 10.1545 3.1241 1.6141 42 1 11.8093 2.7804 2.1725 43 1 11.1695 1.9615 0.7273 44 1 10.5442 2.3382 4.3518 45 1 9.8420 0.7089 4.4949 46 1 11.7856 0.8275 7.5474 47 1 5.6602 2.6816 2.4046 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071921633.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:12 Heat of formation + Delta-G solvation = -108.224076 kcal Electronic energy + Delta-G solvation = -30111.315415 eV Core-core repulsion = 25755.700098 eV Total energy + Delta-G solvation = -4355.615317 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 359.147 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -49.79432 -40.93254 -38.59992 -38.21047 -37.19500 -36.82699 -35.86198 -34.48971 -32.38234 -31.64435 -30.44276 -29.64129 -27.67067 -26.75681 -25.70539 -24.19743 -24.10006 -22.95642 -21.61282 -20.42369 -19.02725 -18.68686 -18.41972 -18.07083 -17.68537 -17.58515 -17.22623 -16.76952 -16.62900 -16.02634 -15.93757 -15.72421 -15.30625 -15.08230 -14.94687 -14.93299 -14.49128 -14.21866 -14.07587 -13.91175 -13.72728 -13.58301 -13.31677 -13.18671 -13.12214 -13.00850 -12.92391 -12.87871 -12.80990 -12.73306 -12.63306 -12.45122 -12.36075 -12.11655 -11.96238 -11.80772 -11.70999 -10.61855 -10.52700 -9.99376 -9.77452 -9.62616 -9.56792 -8.19928 -6.31638 -0.40284 0.05254 0.15091 1.38685 1.41397 1.52691 2.04329 2.39670 2.47189 2.67469 2.72693 3.11456 3.19988 3.47714 3.63067 3.73024 4.00141 4.08045 4.11600 4.19092 4.24763 4.36598 4.42394 4.43442 4.55291 4.56157 4.62657 4.76462 4.77918 4.86025 4.89243 4.92571 4.97178 5.05318 5.06329 5.12630 5.18793 5.23109 5.34348 5.42776 5.46893 5.65310 5.72032 5.87188 5.89067 6.08552 6.13946 6.25215 6.77669 7.37440 8.87774 Molecular weight = 359.15amu Principal moments of inertia in cm(-1) A = 0.019549 B = 0.002168 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.968763 B =12909.979360 C =13333.577860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.053 3.947 3 N -0.522 5.522 4 C 0.027 3.973 5 C 0.054 3.946 6 C -0.118 4.118 7 C -0.098 4.098 8 C -0.071 4.071 9 C 0.154 3.846 10 N -1.117 6.117 11 S 2.801 3.199 12 O -1.012 7.012 13 O -1.005 7.005 14 N -1.002 6.002 15 C 0.084 3.916 16 C 0.270 3.730 17 C -0.549 4.549 18 H 0.054 0.946 19 C 0.010 3.990 20 N -0.924 5.924 21 Si 0.956 3.044 22 H -0.268 1.268 23 H -0.270 1.270 24 H -0.281 1.281 25 C -0.134 4.134 26 C 0.098 3.902 27 F -0.142 7.142 28 H 0.073 0.927 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.044 0.956 35 H 0.063 0.937 36 H 0.151 0.849 37 H 0.149 0.851 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.420 0.580 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.029 0.971 45 H 0.019 0.981 46 H 0.267 0.733 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.453 3.677 -18.355 27.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.073 4.073 3 N -0.244 5.244 4 C -0.119 4.119 5 C -0.042 4.042 6 C -0.138 4.138 7 C -0.118 4.118 8 C -0.073 4.073 9 C 0.029 3.971 10 N -0.880 5.880 11 S 2.809 3.191 12 O -0.996 6.996 13 O -0.989 6.989 14 N -0.844 5.844 15 C -0.061 4.061 16 C 0.146 3.854 17 C -0.588 4.588 18 H 0.072 0.928 19 C -0.190 4.190 20 N -0.564 5.564 21 Si 0.781 3.219 22 H -0.192 1.192 23 H -0.195 1.195 24 H -0.207 1.207 25 C -0.154 4.154 26 C 0.078 3.922 27 F -0.120 7.120 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.107 0.893 34 H 0.063 0.937 35 H 0.082 0.918 36 H 0.168 0.832 37 H 0.167 0.833 38 H 0.119 0.881 39 H 0.108 0.892 40 H 0.255 0.745 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.047 0.953 45 H 0.037 0.963 46 H 0.076 0.924 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -20.216 3.264 -18.159 27.370 hybrid contribution 0.624 -0.484 0.749 1.088 sum -19.592 2.780 -17.410 26.357 Atomic orbital electron populations 1.21781 0.93250 1.02639 1.02546 1.22235 0.97191 0.86578 1.01321 1.59595 1.09162 1.18158 1.37458 1.22530 1.02801 0.98633 0.87931 1.18957 0.90303 0.99760 0.95130 1.21679 0.93250 0.99261 0.99625 1.21315 0.95514 0.97729 0.97215 1.19626 0.94489 0.97978 0.95163 1.20390 0.91698 0.89015 0.95995 1.55903 1.26182 1.44216 1.61665 1.01150 0.73211 0.72667 0.72101 1.93579 1.86614 1.54835 1.64577 1.93505 1.80338 1.86392 1.38623 1.57462 1.70495 1.39936 1.16517 1.21660 1.00806 0.89611 0.94053 1.18629 0.95378 0.96947 0.74419 1.21895 1.01859 1.42790 0.92280 0.92782 1.25769 1.01314 0.95648 0.96247 1.70013 1.37395 1.48926 1.00078 0.85532 0.79703 0.78259 0.78365 1.19245 1.19538 1.20684 1.21186 0.90783 1.01991 1.01406 1.17767 0.87460 0.97314 0.89707 1.91471 1.71190 1.80432 1.68927 0.90761 0.92834 0.91527 0.92946 0.91802 0.89283 0.93709 0.91778 0.83152 0.83282 0.88138 0.89228 0.74462 0.90424 0.91250 0.90416 0.95319 0.96312 0.92430 0.83616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.84 71.98 0.71 -0.83 16 2 C 0.05 0.72 5.26 86.31 0.45 1.17 16 3 N -0.52 -8.71 4.57 -719.83 -3.29 -12.00 16 4 C 0.03 0.32 9.06 127.69 1.16 1.48 16 5 C 0.05 1.00 4.68 38.21 0.18 1.18 16 6 C -0.12 -1.77 8.71 22.39 0.19 -1.57 16 7 C -0.10 -1.56 9.69 22.26 0.22 -1.34 16 8 C -0.07 -1.30 5.28 -19.85 -0.10 -1.41 16 9 C 0.15 3.09 6.38 85.63 0.55 3.64 16 10 N -1.12 -29.71 6.04 -190.79 -1.15 -30.87 16 11 S 2.80 104.97 6.09 -56.49 -0.34 104.62 16 12 O -1.01 -48.35 16.99 -128.00 -2.17 -50.52 16 13 O -1.01 -38.53 16.34 -128.00 -2.09 -40.62 16 14 N -1.00 -39.45 3.23 -543.21 -1.75 -41.20 16 15 C 0.08 2.56 10.69 127.77 1.37 3.93 16 16 C 0.27 13.47 5.10 85.64 0.44 13.91 16 17 C -0.55 -30.90 9.38 25.60 0.24 -30.65 16 18 H 0.05 3.04 7.81 -2.91 -0.02 3.01 16 19 C 0.01 0.55 5.46 84.66 0.46 1.01 16 20 N -0.92 -54.47 13.29 21.45 0.28 -54.18 16 21 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 22 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 24 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 25 C -0.13 -2.67 9.67 22.29 0.22 -2.46 16 26 C 0.10 2.14 7.31 22.48 0.16 2.30 16 27 F -0.14 -3.61 17.08 44.97 0.77 -2.85 16 28 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.05 0.70 8.14 -2.39 -0.02 0.69 16 30 H 0.07 0.57 6.55 -2.39 -0.02 0.56 16 31 H 0.05 0.57 7.47 -2.38 -0.02 0.55 16 32 H 0.06 1.03 8.06 -2.38 -0.02 1.01 16 33 H 0.09 0.84 6.47 -2.39 -0.02 0.83 16 34 H 0.04 0.42 7.49 -2.39 -0.02 0.41 16 35 H 0.06 0.85 8.13 -2.39 -0.02 0.83 16 36 H 0.15 1.57 7.17 -2.91 -0.02 1.55 16 37 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 38 H 0.10 1.81 7.74 -2.39 -0.02 1.79 16 39 H 0.09 1.59 7.99 -2.39 -0.02 1.57 16 40 H 0.42 10.41 8.65 -96.74 -0.84 9.57 16 41 H 0.08 1.76 8.05 -2.39 -0.02 1.74 16 42 H 0.07 2.24 8.07 -2.39 -0.02 2.22 16 43 H 0.08 2.19 7.05 -2.39 -0.02 2.17 16 44 H 0.03 1.44 8.11 -2.39 -0.02 1.42 16 45 H 0.02 1.02 7.50 -2.39 -0.02 1.01 16 46 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 47 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -74.16 403.99 -1.34 -75.50 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.15 Total: 15.03 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: 6.23 Total: -9.65 kcal Atomic # 7 Polarization: -132.34 SS G_CDS: -5.91 Total: -138.25 kcal Atomic # 8 Polarization: -86.88 SS G_CDS: -4.27 Total: -91.15 kcal Atomic # 9 Polarization: -3.61 SS G_CDS: 0.77 Total: -2.85 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Atomic # 16 Polarization: 104.97 SS G_CDS: -0.34 Total: 104.62 kcal Total: -74.16 -1.34 -75.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071921633.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.723 kcal (2) G-P(sol) polarization free energy of solvation -74.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds