Wall clock time and date at job start Tue Mar 31 2020 05:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.47320 * 126.69014 * 2 1 4 4 C 1.51581 * 103.59430 * 180.02562 * 3 2 1 5 5 O 1.21235 * 127.15651 * 180.02562 * 4 3 2 6 6 N 1.34774 * 105.68455 * 0.02562 * 4 3 2 7 7 C 1.46496 * 124.17425 * 179.97438 * 6 4 3 8 8 C 1.53008 * 109.47071 * 90.02627 * 7 6 4 9 9 C 1.52994 * 109.47064 * 179.97438 * 8 7 6 10 10 C 1.50707 * 109.46774 * 180.02562 * 9 8 7 11 11 O 1.21283 * 120.00097 * 354.45796 * 10 9 8 12 12 N 1.34775 * 119.99667 * 174.45902 * 10 9 8 13 13 C 1.46506 * 120.00030 * 184.45100 * 12 10 9 14 14 C 1.50707 * 109.47103 * 270.00389 * 13 12 10 15 15 H 1.07998 * 119.99957 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99566 * 179.97438 * 14 13 12 17 17 N 1.31505 * 120.00165 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99610 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47478 * 90.00050 * 18 16 14 20 20 H 1.48497 * 109.46998 * 210.00158 * 18 16 14 21 21 H 1.48508 * 109.46959 * 329.99740 * 18 16 14 22 22 C 1.39923 * 120.00153 * 4.45919 * 12 10 9 23 23 C 1.38872 * 120.07336 * 66.79372 * 22 12 10 24 24 C 1.38113 * 119.92646 * 179.97438 * 23 22 12 25 25 C 1.38284 * 120.07236 * 359.97313 * 24 23 22 26 26 C 1.38277 * 120.14310 * 0.04475 * 25 24 23 27 27 C 1.38117 * 120.06854 * 359.96101 * 26 25 24 28 28 C 1.33793 * 111.64346 * 0.22779 * 6 4 3 29 29 O 1.21535 * 123.76805 * 179.76971 * 28 6 4 30 30 H 1.09004 * 109.47242 * 90.00439 * 1 2 3 31 31 H 1.08997 * 109.46980 * 209.99719 * 1 2 3 32 32 H 1.09003 * 109.47236 * 329.99905 * 1 2 3 33 33 H 1.08996 * 110.60009 * 61.50524 * 3 2 1 34 34 H 1.08997 * 110.59818 * 298.56157 * 3 2 1 35 35 H 1.08998 * 109.47428 * 330.02607 * 7 6 4 36 36 H 1.08998 * 109.47017 * 210.02094 * 7 6 4 37 37 H 1.09004 * 109.46888 * 59.99301 * 8 7 6 38 38 H 1.09001 * 109.46698 * 300.00147 * 8 7 6 39 39 H 1.08998 * 109.47255 * 60.00090 * 9 8 7 40 40 H 1.08998 * 109.47196 * 299.99573 * 9 8 7 41 41 H 1.09001 * 109.46670 * 30.00181 * 13 12 10 42 42 H 1.08996 * 109.47328 * 150.00546 * 13 12 10 43 43 H 0.97008 * 120.00038 * 179.97438 * 17 16 14 44 44 H 1.07996 * 120.03472 * 359.70196 * 23 22 12 45 45 H 1.07998 * 119.96255 * 179.97438 * 24 23 22 46 46 H 1.08010 * 119.92736 * 180.02562 * 25 24 23 47 47 H 1.07999 * 119.96673 * 179.97438 * 26 25 24 48 48 H 1.07999 * 120.03237 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.3451 1.1813 0.0000 4 6 3.7395 0.5867 -0.0007 5 8 4.7920 1.1883 -0.0004 6 7 3.5656 -0.7498 -0.0015 7 6 4.6614 -1.7221 -0.0029 8 6 5.0433 -2.0622 1.4391 9 6 6.1872 -3.0781 1.4377 10 6 6.5629 -3.4135 2.8581 11 8 6.0446 -2.8186 3.7791 12 7 7.4750 -4.3746 3.1048 13 6 7.7689 -4.7686 4.4850 14 6 8.8910 -3.9180 5.0221 15 1 9.3400 -3.1595 4.3981 16 6 9.3436 -4.1075 6.3106 17 7 8.7959 -5.0301 7.0710 18 14 10.7340 -3.0526 6.9767 19 1 10.1701 -1.8378 7.6182 20 1 11.5072 -3.8284 7.9794 21 1 11.6300 -2.6531 5.8618 22 6 8.1413 -4.9960 2.0429 23 6 9.0269 -4.2703 1.2570 24 6 9.6834 -4.8868 0.2099 25 6 9.4601 -6.2254 -0.0559 26 6 8.5787 -6.9507 0.7245 27 6 7.9190 -6.3400 1.7730 28 6 2.2688 -1.0787 -0.0065 29 8 1.8624 -2.2241 -0.0122 30 1 -0.3634 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5139 33 1 2.1840 1.7797 0.8967 34 1 2.1831 1.7803 -0.8961 35 1 5.5237 -1.2971 -0.5166 36 1 4.3422 -2.6284 -0.5176 37 1 4.1809 -2.4871 1.9528 38 1 5.3624 -1.1558 1.9538 39 1 7.0496 -2.6535 0.9239 40 1 5.8676 -3.9844 0.9232 41 1 6.8800 -4.6282 5.1000 42 1 8.0649 -5.8174 4.5082 43 1 9.1146 -5.1636 7.9774 44 1 9.1986 -3.2239 1.4616 45 1 10.3718 -4.3229 -0.4020 46 1 9.9751 -6.7052 -0.8752 47 1 8.4062 -7.9958 0.5141 48 1 7.2304 -6.9070 2.3820 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072281052.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:12 Heat of formation + Delta-G solvation = -65.292758 kcal Electronic energy + Delta-G solvation = -31842.054249 eV Core-core repulsion = 27476.316927 eV Total energy + Delta-G solvation = -4365.737321 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 359.168 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.35638 -41.44765 -39.72815 -39.53755 -37.33267 -37.08745 -36.49925 -34.87893 -34.29024 -31.83841 -30.99899 -30.49179 -29.30543 -28.00634 -27.10847 -25.16822 -24.02338 -23.46982 -23.31496 -22.85422 -21.18403 -20.43362 -18.85784 -18.71964 -18.31508 -18.05629 -17.73811 -17.41858 -17.10615 -16.86022 -16.57646 -16.17122 -15.94241 -15.82780 -15.51664 -15.43573 -15.09799 -14.96242 -14.88432 -14.49772 -14.36959 -14.26460 -13.73545 -13.58691 -13.44842 -13.35378 -13.29078 -13.18744 -12.98303 -12.91210 -12.69502 -12.42972 -12.15294 -12.11999 -11.97485 -11.95729 -11.74623 -11.33960 -11.06281 -10.88592 -10.70613 -10.12659 -9.98327 -9.80848 -9.22585 -8.27979 -6.42954 0.37935 0.52308 0.57947 1.04292 1.31734 1.35215 1.44914 1.65964 1.86850 2.01628 2.17638 2.36637 2.88746 3.01708 3.02307 3.48098 3.63595 3.80148 3.91302 4.08422 4.12729 4.14749 4.23697 4.29687 4.33682 4.35484 4.37057 4.50609 4.55272 4.62347 4.67686 4.68022 4.78125 4.82757 4.91834 4.97737 5.03294 5.07569 5.09775 5.17484 5.39741 5.40691 5.55644 5.64718 5.65765 5.77141 5.97332 6.05159 6.09332 6.31618 6.61734 6.69706 6.96766 7.19443 7.33813 8.79450 Molecular weight = 359.17amu Principal moments of inertia in cm(-1) A = 0.009552 B = 0.002661 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2930.723701 B =10518.425669 C =11990.887377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.624 5.624 3 C 0.074 3.926 4 C 0.514 3.486 5 O -0.500 6.500 6 N -0.582 5.582 7 C 0.125 3.875 8 C -0.107 4.107 9 C -0.116 4.116 10 C 0.502 3.498 11 O -0.583 6.583 12 N -0.565 5.565 13 C 0.266 3.734 14 C -0.541 4.541 15 H 0.051 0.949 16 C 0.008 3.992 17 N -0.928 5.928 18 Si 0.968 3.032 19 H -0.278 1.278 20 H -0.271 1.271 21 H -0.263 1.263 22 C 0.126 3.874 23 C -0.135 4.135 24 C -0.101 4.101 25 C -0.119 4.119 26 C -0.103 4.103 27 C -0.142 4.142 28 C 0.688 3.312 29 O -0.582 6.582 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.114 0.886 33 H 0.150 0.850 34 H 0.162 0.838 35 H 0.114 0.886 36 H 0.107 0.893 37 H 0.050 0.950 38 H 0.054 0.946 39 H 0.117 0.883 40 H 0.113 0.887 41 H 0.001 0.999 42 H 0.021 0.979 43 H 0.268 0.732 44 H 0.114 0.886 45 H 0.155 0.845 46 H 0.160 0.840 47 H 0.151 0.849 48 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.035 8.302 -23.777 27.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.363 5.363 3 C -0.051 4.051 4 C 0.304 3.696 5 O -0.372 6.372 6 N -0.327 5.327 7 C 0.004 3.996 8 C -0.146 4.146 9 C -0.156 4.156 10 C 0.292 3.708 11 O -0.463 6.463 12 N -0.292 5.292 13 C 0.146 3.854 14 C -0.579 4.579 15 H 0.069 0.931 16 C -0.191 4.191 17 N -0.567 5.567 18 Si 0.792 3.208 19 H -0.204 1.204 20 H -0.196 1.196 21 H -0.187 1.187 22 C 0.035 3.965 23 C -0.155 4.155 24 C -0.119 4.119 25 C -0.137 4.137 26 C -0.121 4.121 27 C -0.162 4.162 28 C 0.390 3.610 29 O -0.459 6.459 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.132 0.868 33 H 0.168 0.832 34 H 0.179 0.821 35 H 0.132 0.868 36 H 0.125 0.875 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.135 0.865 40 H 0.131 0.869 41 H 0.019 0.981 42 H 0.039 0.961 43 H 0.077 0.923 44 H 0.132 0.868 45 H 0.172 0.828 46 H 0.177 0.823 47 H 0.169 0.831 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -11.083 8.219 -23.087 26.896 hybrid contribution 0.586 0.110 1.557 1.667 sum -10.497 8.329 -21.530 25.359 Atomic orbital electron populations 1.21805 0.72127 1.04789 1.03787 1.47737 1.07756 1.04819 1.75953 1.22767 0.83116 0.89530 1.09661 1.21594 0.92813 0.81801 0.73439 1.90828 1.32563 1.66461 1.47351 1.46539 1.08125 1.10017 1.67993 1.21690 0.88502 0.92799 0.96646 1.21496 0.97541 0.98775 0.96782 1.21519 1.00533 1.01694 0.91852 1.21412 0.78285 0.78397 0.92700 1.90644 1.55504 1.51398 1.48777 1.45831 1.38794 1.37402 1.07130 1.18817 0.94852 0.94766 0.76983 1.21594 1.18187 1.19169 0.98956 0.93077 1.25862 0.99794 0.96721 0.96709 1.70046 1.43429 1.34088 1.09173 0.85403 0.78597 0.78373 0.78406 1.20403 1.19615 1.18684 1.18004 0.95833 0.93231 0.89405 1.21385 0.96282 1.00516 0.97308 1.21347 0.98684 0.95666 0.96217 1.21555 0.97963 0.93933 1.00260 1.21323 0.95949 1.01007 0.93855 1.21378 1.01677 0.93801 0.99319 1.16150 0.81174 0.85730 0.77914 1.90957 1.77465 1.20571 1.56918 0.90375 0.91606 0.86772 0.83221 0.82051 0.86796 0.87508 0.93115 0.92704 0.86464 0.86925 0.98124 0.96099 0.92265 0.86763 0.82771 0.82262 0.83109 0.87112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.86 11.17 127.77 1.43 2.29 16 2 N -0.62 -8.76 3.42 -866.97 -2.96 -11.73 16 3 C 0.07 0.66 7.66 85.76 0.66 1.32 16 4 C 0.51 10.05 8.32 87.94 0.73 10.79 16 5 O -0.50 -12.96 17.76 -2.89 -0.05 -13.01 16 6 N -0.58 -13.15 2.60 -773.12 -2.01 -15.16 16 7 C 0.12 2.85 5.70 86.38 0.49 3.34 16 8 C -0.11 -3.27 4.84 30.59 0.15 -3.12 16 9 C -0.12 -3.62 4.37 29.85 0.13 -3.49 16 10 C 0.50 22.69 7.53 87.66 0.66 23.35 16 11 O -0.58 -32.12 15.61 -3.04 -0.05 -32.17 16 12 N -0.56 -26.31 2.51 -635.28 -1.59 -27.91 16 13 C 0.27 15.28 5.07 85.63 0.43 15.71 16 14 C -0.54 -32.78 9.39 25.60 0.24 -32.54 16 15 H 0.05 3.09 7.81 -2.91 -0.02 3.06 16 16 C 0.01 0.49 5.46 84.66 0.46 0.95 16 17 N -0.93 -57.92 13.28 21.45 0.28 -57.63 16 18 Si 0.97 46.58 29.54 68.60 2.03 48.60 16 19 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 20 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 21 H -0.26 -12.06 7.11 99.48 0.71 -11.36 16 22 C 0.13 4.69 4.42 38.15 0.17 4.86 16 23 C -0.14 -4.22 8.46 22.39 0.19 -4.03 16 24 C -0.10 -2.28 10.04 22.25 0.22 -2.06 16 25 C -0.12 -2.38 10.04 22.29 0.22 -2.16 16 26 C -0.10 -2.43 10.04 22.25 0.22 -2.21 16 27 C -0.14 -4.61 9.64 22.39 0.22 -4.40 16 28 C 0.69 16.16 8.31 179.44 1.49 17.66 16 29 O -0.58 -18.25 17.15 -3.83 -0.07 -18.32 16 30 H 0.08 0.37 8.14 -2.38 -0.02 0.35 16 31 H 0.07 0.76 8.04 -2.39 -0.02 0.74 16 32 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 33 H 0.15 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.16 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.11 2.19 8.00 -2.39 -0.02 2.17 16 36 H 0.11 2.25 7.85 -2.39 -0.02 2.23 16 37 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 38 H 0.05 1.91 8.04 -2.39 -0.02 1.89 16 39 H 0.12 3.11 6.99 -2.39 -0.02 3.09 16 40 H 0.11 3.03 8.02 -2.39 -0.02 3.01 16 41 H 0.00 0.04 7.49 -2.39 -0.02 0.03 16 42 H 0.02 1.23 7.83 -2.39 -0.02 1.21 16 43 H 0.27 15.62 8.31 -92.70 -0.77 14.85 16 44 H 0.11 3.67 7.90 -2.91 -0.02 3.65 16 45 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 46 H 0.16 1.97 8.06 -2.91 -0.02 1.94 16 47 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 48 H 0.11 3.76 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -91.49 412.88 4.66 -86.83 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 0.96 Total: 14.24 kcal Atomic # 6 Polarization: 18.13 SS G_CDS: 8.12 Total: 26.25 kcal Atomic # 7 Polarization: -106.14 SS G_CDS: -6.29 Total: -112.43 kcal Atomic # 8 Polarization: -63.33 SS G_CDS: -0.16 Total: -63.50 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.60 kcal Total: -91.49 4.66 -86.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072281052.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.542 kcal (2) G-P(sol) polarization free energy of solvation -91.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds