Wall clock time and date at job start Tue Mar 31 2020 06:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46957 * 2 1 4 4 C 1.50700 * 109.46920 * 119.99480 * 2 1 3 5 5 C 1.34506 * 125.79431 * 260.00328 * 4 2 1 6 6 C 1.41382 * 106.83991 * 180.02562 * 5 4 2 7 7 C 1.34509 * 106.84416 * 359.97438 * 6 5 4 8 8 O 1.34308 * 108.41933 * 359.74489 * 7 6 5 9 9 N 1.46900 * 109.47352 * 240.00137 * 2 1 3 10 10 C 1.46899 * 110.99430 * 306.04646 * 9 2 1 11 11 C 1.46897 * 111.00236 * 69.99920 * 9 2 1 12 12 C 1.50692 * 109.47333 * 170.00259 * 11 9 2 13 13 O 1.21300 * 119.99794 * 359.97438 * 12 11 9 14 14 N 1.34778 * 120.00235 * 180.02562 * 12 11 9 15 15 C 1.39941 * 120.00087 * 174.26342 * 14 12 11 16 16 C 1.38681 * 120.11392 * 335.23703 * 15 14 12 17 17 C 1.38218 * 120.01988 * 180.25804 * 16 15 14 18 18 C 1.38395 * 120.24798 * 359.73894 * 17 16 15 19 19 C 1.38080 * 120.23091 * 359.97438 * 18 17 16 20 20 C 1.38997 * 119.97739 * 0.02562 * 19 18 17 21 21 S 1.76197 * 120.12568 * 179.97438 * 20 19 18 22 22 C 1.76198 * 99.99932 * 5.61221 * 21 20 19 23 23 H 1.08003 * 119.99869 * 354.96559 * 22 21 20 24 24 C 1.38692 * 120.00049 * 174.96540 * 22 21 20 25 25 N 1.31655 * 119.99793 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99774 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.46945 * 60.00602 * 26 24 22 28 28 H 1.48499 * 109.46812 * 179.97438 * 26 24 22 29 29 H 1.48494 * 109.47423 * 299.99867 * 26 24 22 30 30 H 1.08999 * 109.47421 * 299.99931 * 1 2 3 31 31 H 1.09002 * 109.46986 * 59.99822 * 1 2 3 32 32 H 1.09001 * 109.46957 * 179.97438 * 1 2 3 33 33 H 1.07995 * 126.57800 * 359.96210 * 5 4 2 34 34 H 1.08008 * 126.57630 * 180.02562 * 6 5 4 35 35 H 1.07997 * 125.79391 * 180.02562 * 7 6 5 36 36 H 1.09001 * 109.46819 * 183.95335 * 10 9 2 37 37 H 1.09001 * 109.47556 * 303.95249 * 10 9 2 38 38 H 1.08997 * 109.47611 * 63.95842 * 10 9 2 39 39 H 1.09002 * 109.46878 * 49.99711 * 11 9 2 40 40 H 1.08999 * 109.46895 * 290.00480 * 11 9 2 41 41 H 0.97001 * 119.99846 * 354.25633 * 14 12 11 42 42 H 1.08005 * 119.98830 * 359.97438 * 16 15 14 43 43 H 1.08003 * 119.87457 * 179.76668 * 17 16 15 44 44 H 1.08009 * 119.88410 * 180.02562 * 18 17 16 45 45 H 1.07996 * 120.01487 * 180.02562 * 19 18 17 46 46 H 0.96997 * 119.99452 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.4731 -0.1190 2.3554 6 6 2.8441 -1.1542 3.2439 7 6 2.6074 -2.3162 2.6092 8 8 2.1101 -2.0414 1.3922 9 7 2.0197 -0.6925 -1.1994 10 6 1.4343 -2.0354 -1.3077 11 6 1.7530 0.0972 -2.4090 12 6 2.4775 -0.5163 -3.5794 13 8 3.1503 -1.5131 -3.4212 14 7 2.3787 0.0432 -4.8015 15 6 3.1446 -0.4533 -5.8623 16 6 4.3310 -1.1252 -5.6091 17 6 5.0887 -1.6101 -6.6586 18 6 4.6655 -1.4327 -7.9642 19 6 3.4829 -0.7705 -8.2279 20 6 2.7136 -0.2789 -7.1798 21 16 1.2042 0.5674 -7.5117 22 6 1.1047 0.3424 -9.2565 23 1 1.9170 -0.1322 -9.7869 24 6 -0.0168 0.7747 -9.9485 25 7 -1.0067 1.3536 -9.3019 26 14 -0.1219 0.5368 -11.7984 27 1 -0.0402 -0.9114 -12.1166 28 1 -1.4118 1.0800 -12.2947 29 1 1.0021 1.2520 -12.4542 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.5330 0.9428 2.5433 34 1 3.2408 -1.0349 4.2414 35 1 2.7828 -3.3030 3.0116 36 1 1.8664 -2.5520 -2.1648 37 1 1.6466 -2.5987 -0.3990 38 1 0.3556 -1.9520 -1.4399 39 1 2.1025 1.1189 -2.2603 40 1 0.6815 0.1053 -2.6087 41 1 1.7766 0.7900 -4.9459 42 1 4.6654 -1.2656 -4.5918 43 1 6.0142 -2.1297 -6.4588 44 1 5.2619 -1.8144 -8.7798 45 1 3.1558 -0.6344 -9.2481 46 1 -1.7909 1.6562 -9.7860 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072583561.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:36 Heat of formation + Delta-G solvation = 29.955043 kcal Electronic energy + Delta-G solvation = -28918.117219 eV Core-core repulsion = 24901.544361 eV Total energy + Delta-G solvation = -4016.572858 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 360.129 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.76291 -40.27467 -38.43478 -37.24838 -34.36298 -33.29485 -32.77111 -31.87703 -30.31690 -29.55957 -28.65077 -27.69403 -25.90740 -25.60087 -22.88101 -22.31142 -21.91894 -21.53796 -20.18961 -19.86329 -18.38419 -17.60403 -16.91891 -16.78856 -16.22598 -16.05738 -15.67641 -15.54813 -15.17986 -15.09155 -14.38682 -14.23443 -14.01032 -13.71391 -13.60460 -13.30473 -13.07910 -12.94444 -12.92084 -12.84906 -12.56264 -12.32671 -12.10141 -11.69562 -11.67355 -11.50420 -11.40072 -11.25135 -11.22083 -11.10033 -10.40482 -10.11108 -10.07585 -9.84436 -9.56526 -9.32148 -8.80992 -8.74480 -8.65950 -8.39988 -7.63969 -6.54636 -6.53031 -4.25402 1.57244 1.86090 2.09633 2.43724 2.81308 2.89594 2.98495 3.10557 3.13606 3.15494 3.34238 3.87964 3.96808 4.32810 4.46677 4.63269 4.75423 4.81457 4.88760 4.89480 4.97348 5.03122 5.07184 5.16088 5.28909 5.36235 5.47880 5.58418 5.62393 5.66015 5.68177 5.72019 5.79451 5.90137 5.90664 6.16442 6.23078 6.29358 6.32126 6.57937 6.67573 6.77403 6.86620 6.92333 7.02655 7.13005 7.23045 7.44052 7.69671 7.78983 8.11448 8.41528 8.94105 10.52727 Molecular weight = 360.13amu Principal moments of inertia in cm(-1) A = 0.016563 B = 0.002162 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.078049 B =12946.766939 C =14227.591582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.160 3.840 3 H 0.111 0.889 4 C 0.014 3.986 5 C -0.212 4.212 6 C -0.214 4.214 7 C -0.048 4.048 8 O -0.164 6.164 9 N -0.514 5.514 10 C 0.006 3.994 11 C 0.033 3.967 12 C 0.512 3.488 13 O -0.508 6.508 14 N -0.657 5.657 15 C 0.129 3.871 16 C -0.112 4.112 17 C -0.145 4.145 18 C -0.119 4.119 19 C -0.128 4.128 20 C -0.107 4.107 21 S 0.028 5.972 22 C -0.544 4.544 23 H 0.095 0.905 24 C 0.077 3.923 25 N -0.866 5.866 26 Si 0.924 3.076 27 H -0.270 1.270 28 H -0.281 1.281 29 H -0.270 1.270 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.199 0.801 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.027 0.973 39 H 0.108 0.892 40 H 0.072 0.928 41 H 0.411 0.589 42 H 0.137 0.863 43 H 0.112 0.888 44 H 0.111 0.889 45 H 0.138 0.862 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.087 -1.701 19.893 20.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.051 3.949 3 H 0.129 0.871 4 C -0.037 4.037 5 C -0.231 4.231 6 C -0.233 4.233 7 C -0.115 4.115 8 O -0.060 6.060 9 N -0.237 5.237 10 C -0.141 4.141 11 C -0.098 4.098 12 C 0.299 3.701 13 O -0.383 6.383 14 N -0.302 5.302 15 C 0.027 3.973 16 C -0.133 4.133 17 C -0.169 4.169 18 C -0.139 4.139 19 C -0.154 4.154 20 C -0.224 4.224 21 S 0.281 5.719 22 C -0.691 4.691 23 H 0.112 0.888 24 C -0.133 4.133 25 N -0.500 5.500 26 Si 0.749 3.251 27 H -0.195 1.195 28 H -0.206 1.206 29 H -0.195 1.195 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.164 0.836 34 H 0.163 0.837 35 H 0.216 0.784 36 H 0.110 0.890 37 H 0.101 0.899 38 H 0.046 0.954 39 H 0.126 0.874 40 H 0.090 0.910 41 H 0.247 0.753 42 H 0.155 0.845 43 H 0.130 0.870 44 H 0.129 0.871 45 H 0.155 0.845 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.765 -1.857 20.525 20.950 hybrid contribution -0.350 -0.201 -1.862 1.906 sum 3.415 -2.058 18.663 19.084 Atomic orbital electron populations 1.22545 0.95609 1.03491 1.03227 1.20314 0.93196 0.96518 0.84826 0.87075 1.22168 1.03725 0.80679 0.97120 1.21495 1.07005 1.00521 0.94127 1.21771 1.07542 0.92257 1.01720 1.24074 1.02942 1.00389 0.84135 1.84123 1.64550 1.24577 1.32736 1.61909 1.58681 1.03081 1.00018 1.22846 0.96715 0.89625 1.04947 1.22003 0.99737 0.98652 0.89374 1.20413 0.82106 0.84199 0.83403 1.90631 1.39730 1.24051 1.83890 1.43387 1.43260 1.35488 1.08052 1.17178 0.92530 1.02360 0.85278 1.21098 0.92771 0.99281 1.00195 1.20768 1.00191 1.03453 0.92494 1.20964 0.96740 0.99963 0.96266 1.21278 0.94785 1.00021 0.99353 1.22438 1.02760 1.03619 0.93618 1.82991 1.16704 1.60924 1.11254 1.23211 1.07721 1.46866 0.91300 0.88791 1.25086 0.94209 0.93728 1.00262 1.69985 1.06877 1.36243 1.36882 0.86108 0.77915 0.79135 0.81897 1.19496 1.20595 1.19464 0.91279 0.91135 0.91393 0.83601 0.83687 0.78416 0.89037 0.89946 0.95417 0.87357 0.90986 0.75274 0.84495 0.87020 0.87142 0.84458 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.52 8.43 37.16 0.31 -1.21 16 2 C 0.16 1.49 2.78 -68.86 -0.19 1.30 16 3 H 0.11 0.85 7.92 -51.93 -0.41 0.44 16 4 C 0.01 0.15 6.03 -35.63 -0.21 -0.07 16 5 C -0.21 -2.01 10.80 -39.71 -0.43 -2.44 16 6 C -0.21 -1.88 10.91 -39.70 -0.43 -2.32 16 7 C -0.05 -0.43 12.09 29.41 0.36 -0.07 16 8 O -0.16 -1.84 7.80 5.68 0.04 -1.80 16 9 N -0.51 -6.05 4.44 -237.74 -1.06 -7.11 16 10 C 0.01 0.07 8.33 60.06 0.50 0.57 16 11 C 0.03 0.37 5.02 -4.98 -0.03 0.35 16 12 C 0.51 7.87 7.36 -10.99 -0.08 7.79 16 13 O -0.51 -9.26 11.48 5.54 0.06 -9.20 16 14 N -0.66 -10.90 5.16 -9.70 -0.05 -10.95 16 15 C 0.13 2.52 6.44 -83.44 -0.54 1.98 16 16 C -0.11 -2.10 8.71 -39.42 -0.34 -2.44 16 17 C -0.15 -2.55 10.04 -39.53 -0.40 -2.94 16 18 C -0.12 -2.14 10.03 -39.58 -0.40 -2.54 16 19 C -0.13 -2.68 9.26 -39.36 -0.36 -3.05 16 20 C -0.11 -2.33 6.12 -38.75 -0.24 -2.56 16 21 S 0.03 0.66 20.37 -107.50 -2.19 -1.53 16 22 C -0.54 -14.28 9.08 30.90 0.28 -14.00 16 23 H 0.09 2.37 4.81 -52.48 -0.25 2.12 16 24 C 0.08 2.02 5.49 -17.46 -0.10 1.93 16 25 N -0.87 -23.62 13.22 55.49 0.73 -22.88 16 26 Si 0.92 20.08 29.55 -169.99 -5.02 15.06 16 27 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 28 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 29 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.52 6.91 -51.93 -0.36 0.16 16 32 H 0.07 0.61 6.41 -51.93 -0.33 0.27 16 33 H 0.15 1.10 8.06 -52.49 -0.42 0.67 16 34 H 0.15 0.96 8.06 -52.48 -0.42 0.53 16 35 H 0.20 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.09 1.38 5.88 -51.93 -0.31 1.07 16 37 H 0.08 1.03 5.07 -51.93 -0.26 0.76 16 38 H 0.03 0.31 6.46 -51.93 -0.34 -0.02 16 39 H 0.11 0.94 7.93 -51.93 -0.41 0.53 16 40 H 0.07 0.71 7.06 -51.93 -0.37 0.34 16 41 H 0.41 6.26 7.66 -40.82 -0.31 5.95 16 42 H 0.14 2.56 5.79 -52.48 -0.30 2.26 16 43 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 44 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 45 H 0.14 2.96 4.93 -52.49 -0.26 2.70 16 46 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 383.84 15.07 5.78 5.78 Total: -1.00 -31.49 383.84 -9.58 -41.06 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -5.59 Total: 11.28 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: -2.30 Total: -19.72 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: -0.37 Total: -40.94 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.11 Total: -10.99 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 16 Polarization: 0.66 SS G_CDS: -2.19 Total: -1.53 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.49 -9.58 -41.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072583561.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.019 kcal (2) G-P(sol) polarization free energy of solvation -31.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds